Wall clock time and date at job start Tue Mar 31 2020 14:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34772 * 120.00176 * 2 1 4 4 O 1.21511 * 120.00474 * 174.58089 * 3 2 1 5 5 O 1.34639 * 120.00011 * 354.58165 * 3 2 1 6 6 C 1.45204 * 117.00115 * 179.97438 * 5 3 2 7 7 C 1.53003 * 109.46825 * 60.00071 * 6 5 3 8 8 C 1.52996 * 109.47183 * 179.97438 * 6 5 3 9 9 C 1.52994 * 109.47153 * 300.00429 * 6 5 3 10 10 C 1.46503 * 119.99786 * 180.02562 * 2 1 3 11 11 C 1.50706 * 112.84582 * 241.15628 * 10 2 1 12 12 O 1.21278 * 119.99807 * 213.52304 * 11 10 2 13 13 N 1.34780 * 119.99998 * 33.52850 * 11 10 2 14 14 C 1.46492 * 119.99792 * 175.06578 * 13 11 10 15 15 C 1.53001 * 109.47161 * 179.97438 * 14 13 11 16 16 C 1.50697 * 109.47357 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00106 * 0.02562 * 16 15 14 18 18 C 1.37881 * 120.00256 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99648 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00256 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46898 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47111 * 119.99787 * 20 18 16 23 23 H 1.48497 * 109.47238 * 239.99687 * 20 18 16 24 24 C 1.53775 * 113.61574 * 109.96146 * 10 2 1 25 25 C 1.53953 * 87.01769 * 220.04666 * 24 10 2 26 26 C 1.53770 * 87.11305 * 25.36331 * 25 24 10 27 27 H 1.09000 * 109.47196 * 89.99688 * 1 2 3 28 28 H 1.09003 * 109.47055 * 330.00061 * 1 2 3 29 29 H 1.08996 * 109.47561 * 209.99808 * 1 2 3 30 30 H 1.09007 * 109.47041 * 60.00013 * 7 6 5 31 31 H 1.09002 * 109.47386 * 179.97438 * 7 6 5 32 32 H 1.08997 * 109.47277 * 300.00611 * 7 6 5 33 33 H 1.09004 * 109.46652 * 60.00535 * 8 6 5 34 34 H 1.09003 * 109.47178 * 180.02562 * 8 6 5 35 35 H 1.08998 * 109.47437 * 300.00586 * 8 6 5 36 36 H 1.09002 * 109.47426 * 59.99829 * 9 6 5 37 37 H 1.09003 * 109.46947 * 179.97438 * 9 6 5 38 38 H 1.08997 * 109.47535 * 299.99622 * 9 6 5 39 39 H 0.97004 * 120.00083 * 355.06550 * 13 11 10 40 40 H 1.09001 * 109.47521 * 299.99384 * 14 13 11 41 41 H 1.09004 * 109.47347 * 60.00130 * 14 13 11 42 42 H 1.08996 * 109.47290 * 300.00273 * 15 14 13 43 43 H 1.09003 * 109.47058 * 60.00355 * 15 14 13 44 44 H 0.96999 * 119.99912 * 180.02562 * 19 18 16 45 45 H 1.09004 * 113.61744 * 334.56662 * 24 10 2 46 46 H 1.08998 * 113.61504 * 105.46976 * 24 10 2 47 47 H 1.09004 * 113.53645 * 270.80574 * 25 24 10 48 48 H 1.09001 * 113.74158 * 139.94523 * 25 24 10 49 49 H 1.09008 * 113.61573 * 220.09082 * 26 25 24 50 50 H 1.09004 * 113.69458 * 89.20012 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3499 1.1696 0.0994 5 8 1.4703 2.3306 -0.1101 6 6 2.2608 3.5485 -0.1024 7 6 3.2431 3.5263 -1.2752 8 6 1.3343 4.7587 -0.2366 9 6 3.0379 3.6438 1.2121 10 6 2.1975 -1.2688 -0.0006 11 6 3.0703 -1.4411 1.2159 12 8 4.1229 -2.0369 1.1275 13 7 2.6810 -0.9331 2.4020 14 6 3.4745 -1.1925 3.6058 15 6 2.8189 -0.5071 4.8063 16 6 3.6348 -0.7745 6.0448 17 1 4.5315 -1.3731 5.9819 18 6 3.2366 -0.2549 7.2583 19 7 2.1449 0.4745 7.3348 20 14 4.2483 -0.5858 8.7933 21 1 5.4208 -1.4263 8.4416 22 1 4.7158 0.7025 9.3652 23 1 3.4122 -1.2969 9.7935 24 6 2.9220 -1.5612 -1.3250 25 6 2.4788 -3.0253 -1.1512 26 6 1.3135 -2.4903 -0.3025 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3634 -0.8899 0.5138 30 1 2.6894 3.4585 -2.2117 31 1 3.8363 4.4408 -1.2697 32 1 3.9031 2.6641 -1.1801 33 1 0.6342 4.7746 0.5988 34 1 1.9278 5.6730 -0.2312 35 1 0.7810 4.6906 -1.1732 36 1 3.6980 2.7816 1.3072 37 1 3.6317 4.5579 1.2176 38 1 2.3382 3.6596 2.0476 39 1 1.8754 -0.3957 2.4586 40 1 3.5248 -2.2668 3.7833 41 1 4.4818 -0.7993 3.4688 42 1 2.7689 0.5672 4.6287 43 1 1.8115 -0.9000 4.9436 44 1 1.8649 0.8403 8.1884 45 1 2.4723 -1.0682 -2.1869 46 1 4.0018 -1.4217 -1.2721 47 1 3.1881 -3.6307 -0.5869 48 1 2.1609 -3.5007 -2.0792 49 1 1.0964 -3.0998 0.5748 50 1 0.4223 -2.2516 -0.8830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860744860.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:18 Heat of formation + Delta-G solvation = -120.431037 kcal Electronic energy + Delta-G solvation = -30201.164217 eV Core-core repulsion = 26228.517296 eV Total energy + Delta-G solvation = -3972.646921 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -42.46401 -41.24275 -39.06237 -37.84074 -36.71440 -35.89872 -34.91273 -34.46154 -31.70748 -28.70538 -28.39036 -28.26727 -27.65074 -26.37124 -26.10538 -23.58626 -23.00435 -22.34390 -20.68374 -20.17320 -19.16625 -18.56692 -18.18990 -17.52665 -17.11824 -16.93414 -16.72445 -16.50392 -16.23651 -15.78384 -15.52785 -15.37134 -14.81222 -14.63537 -14.43624 -14.34279 -14.23810 -13.72705 -13.35566 -13.28851 -13.17136 -13.11658 -12.98355 -12.95034 -12.85247 -12.76154 -12.56703 -12.52501 -12.40135 -12.33127 -12.20973 -12.03649 -11.73809 -11.59059 -11.49324 -11.39324 -11.05509 -11.01484 -10.65412 -10.11159 -9.79408 -8.28191 -6.39526 0.93733 1.38154 1.38764 1.52162 1.53127 1.69350 2.13576 2.40226 2.80930 3.06123 3.31430 3.41669 3.58690 3.74260 3.77668 3.79020 3.93781 4.09094 4.33868 4.38187 4.45530 4.49188 4.58524 4.62165 4.66579 4.69000 4.72615 4.74080 4.74845 4.82374 4.88168 4.89230 4.93669 4.96361 5.03610 5.10514 5.19424 5.23576 5.26732 5.34285 5.40363 5.44140 5.45121 5.48144 5.71829 6.09973 6.20920 6.49016 6.72497 7.12952 7.25267 7.30010 8.84123 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.010313 B = 0.004102 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.484934 B = 6824.059841 C = 8592.556931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.588 5.588 3 C 0.641 3.359 4 O -0.585 6.585 5 O -0.357 6.357 6 C 0.128 3.872 7 C -0.176 4.176 8 C -0.132 4.132 9 C -0.182 4.182 10 C 0.137 3.863 11 C 0.526 3.474 12 O -0.575 6.575 13 N -0.711 5.711 14 C 0.143 3.857 15 C 0.029 3.971 16 C -0.548 4.548 17 H 0.057 0.943 18 C 0.010 3.990 19 N -0.925 5.925 20 Si 0.967 3.033 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.272 1.272 24 C -0.119 4.119 25 C -0.128 4.128 26 C -0.108 4.108 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.050 0.950 37 H 0.088 0.912 38 H 0.052 0.948 39 H 0.401 0.599 40 H 0.054 0.946 41 H 0.034 0.966 42 H -0.003 1.003 43 H 0.011 0.989 44 H 0.267 0.733 45 H 0.111 0.889 46 H 0.050 0.950 47 H 0.068 0.932 48 H 0.113 0.887 49 H 0.081 0.919 50 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.168 3.142 -21.823 23.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.330 5.330 3 C 0.396 3.604 4 O -0.474 6.474 5 O -0.272 6.272 6 C 0.092 3.908 7 C -0.233 4.233 8 C -0.189 4.189 9 C -0.240 4.240 10 C 0.049 3.951 11 C 0.312 3.688 12 O -0.454 6.454 13 N -0.360 5.360 14 C 0.019 3.981 15 C -0.008 4.008 16 C -0.586 4.586 17 H 0.076 0.924 18 C -0.189 4.189 19 N -0.564 5.564 20 Si 0.791 3.209 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.197 1.197 24 C -0.158 4.158 25 C -0.166 4.166 26 C -0.146 4.146 27 H 0.106 0.894 28 H 0.096 0.904 29 H 0.114 0.886 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.118 0.882 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.107 0.893 38 H 0.071 0.929 39 H 0.235 0.765 40 H 0.072 0.928 41 H 0.052 0.948 42 H 0.015 0.985 43 H 0.029 0.971 44 H 0.076 0.924 45 H 0.129 0.871 46 H 0.069 0.931 47 H 0.087 0.913 48 H 0.132 0.868 49 H 0.100 0.900 50 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.166 2.900 -21.702 23.368 hybrid contribution 0.614 0.436 1.429 1.615 sum -7.552 3.336 -20.273 21.890 Atomic orbital electron populations 1.22166 0.75635 1.04791 1.04351 1.46854 1.08519 1.01294 1.76292 1.18328 0.83860 0.81965 0.76198 1.90970 1.14207 1.86993 1.55242 1.86300 1.41272 1.13773 1.85827 1.22360 0.91677 0.81094 0.95677 1.22433 0.99619 1.04034 0.97188 1.21858 0.99306 0.93932 1.03798 1.22475 1.01036 1.03722 0.96728 1.22185 0.95126 0.84214 0.93577 1.20667 0.85853 0.77743 0.84520 1.90634 1.24399 1.44686 1.85673 1.46020 1.28970 1.53097 1.07921 1.21226 0.93802 0.99292 0.83747 1.19068 0.95769 0.94464 0.91514 1.21447 1.10361 1.33211 0.93628 0.92436 1.25877 0.96247 0.94368 1.02442 1.70068 1.24661 1.34987 1.26732 0.85369 0.78760 0.78231 0.78531 1.19072 1.20186 1.19737 1.23196 1.00163 0.97921 0.94490 1.22752 0.97097 0.94993 1.01710 1.23353 0.98477 0.91116 1.01608 0.89384 0.90373 0.88597 0.91002 0.89399 0.92559 0.91515 0.88239 0.90192 0.93084 0.89284 0.92893 0.76491 0.92771 0.94776 0.98451 0.97050 0.92426 0.87108 0.93147 0.91291 0.86837 0.89984 0.83984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.07 9.24 127.77 1.18 2.25 16 2 N -0.59 -14.41 2.29 -930.81 -2.13 -16.54 16 3 C 0.64 19.53 7.36 129.79 0.96 20.49 16 4 O -0.58 -22.26 10.89 19.81 0.22 -22.04 16 5 O -0.36 -9.38 8.77 -55.48 -0.49 -9.86 16 6 C 0.13 3.01 1.13 -10.80 -0.01 3.00 16 7 C -0.18 -3.89 8.37 71.98 0.60 -3.28 16 8 C -0.13 -2.07 8.85 71.98 0.64 -1.43 16 9 C -0.18 -5.18 8.37 71.98 0.60 -4.58 16 10 C 0.14 3.68 1.00 3.38 0.00 3.68 16 11 C 0.53 20.21 5.77 87.66 0.51 20.72 16 12 O -0.57 -26.24 15.33 -3.02 -0.05 -26.28 16 13 N -0.71 -28.76 5.50 -463.06 -2.55 -31.31 16 14 C 0.14 6.82 5.62 86.38 0.49 7.31 16 15 C 0.03 1.58 5.09 29.85 0.15 1.73 16 16 C -0.55 -31.94 9.11 25.60 0.23 -31.71 16 17 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 18 C 0.01 0.55 5.46 84.66 0.46 1.02 16 19 N -0.93 -55.26 13.29 21.45 0.28 -54.98 16 20 Si 0.97 44.61 29.54 68.60 2.03 46.64 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 24 C -0.12 -2.94 6.89 31.18 0.21 -2.73 16 25 C -0.13 -2.50 7.69 31.18 0.24 -2.26 16 26 C -0.11 -1.89 6.15 31.12 0.19 -1.70 16 27 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.08 1.25 7.47 -2.39 -0.02 1.24 16 29 H 0.10 1.11 6.93 -2.39 -0.02 1.10 16 30 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.06 1.65 5.88 -2.39 -0.01 1.63 16 33 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.10 1.17 8.14 -2.39 -0.02 1.16 16 35 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.05 1.87 5.88 -2.39 -0.01 1.85 16 37 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.40 15.00 7.90 -92.70 -0.73 14.27 16 40 H 0.05 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.03 1.76 8.14 -2.38 -0.02 1.74 16 42 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 43 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 45 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.05 1.62 7.68 -2.39 -0.02 1.60 16 47 H 0.07 1.74 7.55 -2.39 -0.02 1.72 16 48 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 49 H 0.08 1.52 8.09 -2.38 -0.02 1.50 16 50 H 0.14 1.36 6.92 -2.39 -0.02 1.35 16 Total: -1.00 -77.69 397.37 3.96 -73.73 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: 0.19 Total: 28.15 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: 6.45 Total: 12.51 kcal Atomic # 7 Polarization: -98.44 SS G_CDS: -4.39 Total: -102.83 kcal Atomic # 8 Polarization: -57.88 SS G_CDS: -0.32 Total: -58.19 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -77.69 3.96 -73.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860744860.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.700 kcal (2) G-P(sol) polarization free energy of solvation -77.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds