Wall clock time and date at job start Tue Mar 31 2020 14:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37098 * 120.00001 * 2 1 4 4 H 1.07995 * 119.99928 * 204.38949 * 3 2 1 5 5 C 1.38946 * 119.99901 * 24.39922 * 3 2 1 6 6 N 1.31411 * 120.00463 * 12.63859 * 5 3 2 7 7 Si 1.86803 * 119.99758 * 192.63637 * 5 3 2 8 8 H 1.48503 * 109.47202 * 60.00071 * 7 5 3 9 9 H 1.48504 * 109.47368 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47369 * 299.99853 * 7 5 3 11 11 C 1.34776 * 119.99536 * 180.02562 * 2 1 3 12 12 O 1.21288 * 119.99640 * 180.02562 * 11 2 1 13 13 C 1.50697 * 120.00231 * 359.97438 * 11 2 1 14 14 C 1.53003 * 109.47137 * 180.02562 * 13 11 2 15 15 N 1.46497 * 109.46933 * 179.97438 * 14 13 11 16 16 C 1.46495 * 120.00615 * 269.99759 * 15 14 13 17 17 C 1.53006 * 109.47060 * 89.99876 * 16 15 14 18 18 C 1.52992 * 117.50164 * 243.62770 * 17 16 15 19 19 C 1.53002 * 117.49803 * 175.00246 * 17 16 15 20 20 C 1.34779 * 119.99772 * 90.00251 * 15 14 13 21 21 O 1.21509 * 119.99923 * 359.97438 * 20 15 14 22 22 O 1.34643 * 120.00204 * 179.97438 * 20 15 14 23 23 C 1.45198 * 117.00082 * 179.97438 * 22 20 15 24 24 C 1.53000 * 109.47194 * 60.00248 * 23 22 20 25 25 C 1.52999 * 109.46774 * 180.02562 * 23 22 20 26 26 C 1.52995 * 109.46970 * 299.99839 * 23 22 20 27 27 H 1.09002 * 109.47362 * 265.86597 * 1 2 3 28 28 H 1.08998 * 109.46619 * 25.85721 * 1 2 3 29 29 H 1.08996 * 109.47560 * 145.85964 * 1 2 3 30 30 H 0.96998 * 120.00219 * 179.97438 * 6 5 3 31 31 H 1.08993 * 109.47213 * 60.00311 * 13 11 2 32 32 H 1.09005 * 109.46984 * 300.00062 * 13 11 2 33 33 H 1.09003 * 109.46917 * 59.99940 * 14 13 11 34 34 H 1.08992 * 109.47074 * 300.00097 * 14 13 11 35 35 H 1.08992 * 109.47797 * 210.00399 * 16 15 14 36 36 H 1.09004 * 109.46876 * 330.00699 * 16 15 14 37 37 H 1.08998 * 115.54678 * 29.33720 * 17 16 15 38 38 H 1.09000 * 117.49968 * 0.02562 * 18 17 16 39 39 H 1.09003 * 117.50154 * 145.02305 * 18 17 16 40 40 H 1.09000 * 117.49807 * 214.98350 * 19 17 16 41 41 H 1.08999 * 117.49723 * 0.02562 * 19 17 16 42 42 H 1.08992 * 109.47259 * 59.99579 * 24 23 22 43 43 H 1.08995 * 109.47244 * 179.97438 * 24 23 22 44 44 H 1.09003 * 109.46663 * 299.99854 * 24 23 22 45 45 H 1.08995 * 109.47490 * 60.00359 * 25 23 22 46 46 H 1.09004 * 109.46849 * 179.97438 * 25 23 22 47 47 H 1.09000 * 109.47378 * 299.99917 * 25 23 22 48 48 H 1.09005 * 109.47379 * 60.00708 * 26 23 22 49 49 H 1.09004 * 109.46994 * 180.02562 * 26 23 22 50 50 H 1.08997 * 109.47852 * 300.00085 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1582 1.2290 -0.3862 5 6 1.5489 2.3369 0.4971 6 7 0.4347 2.2491 1.1883 7 14 2.3239 4.0072 0.1829 8 1 2.4042 4.2483 -1.2803 9 1 1.4936 5.0648 0.8134 10 1 3.6896 4.0367 0.7651 11 6 2.1388 -1.1672 -0.0005 12 8 3.3517 -1.1673 -0.0001 13 6 1.3853 -2.4723 -0.0005 14 6 2.3795 -3.6353 -0.0005 15 7 1.6469 -4.9039 0.0001 16 6 1.2811 -5.5380 1.2690 17 6 -0.0955 -5.0374 1.7111 18 6 -0.1724 -4.2408 3.0150 19 6 -0.7105 -5.6720 2.9601 20 6 1.3096 -5.4878 -1.1669 21 8 1.6127 -4.9618 -2.2194 22 8 0.6368 -6.6541 -1.1664 23 6 0.3062 -7.2250 -2.4599 24 6 1.5931 -7.4932 -3.2429 25 6 -0.4521 -8.5385 -2.2588 26 6 -0.5711 -6.2446 -3.2408 27 1 -0.3634 -0.0741 1.0250 28 1 -0.3632 0.9248 -0.4482 29 1 -0.3634 -0.8505 -0.5767 30 1 0.0149 3.0516 1.5356 31 1 0.7584 -2.5298 -0.8902 32 1 0.7590 -2.5302 0.8897 33 1 3.0062 -3.5775 0.8895 34 1 3.0061 -3.5776 -0.8904 35 1 1.2497 -6.6197 1.1390 36 1 2.0208 -5.2846 2.0284 37 1 -0.7728 -4.7522 0.9060 38 1 0.7579 -4.0729 3.5578 39 1 -0.9002 -3.4311 3.0680 40 1 -1.7923 -5.8039 2.9769 41 1 -0.1341 -6.4458 3.4671 42 1 2.2180 -8.1915 -2.6864 43 1 1.3450 -7.9221 -4.2136 44 1 2.1329 -6.5571 -3.3860 45 1 -1.3689 -8.3471 -1.7012 46 1 -0.7007 -8.9668 -3.2298 47 1 0.1725 -9.2371 -1.7022 48 1 -0.0312 -5.3085 -3.3842 49 1 -0.8196 -6.6733 -4.2117 50 1 -1.4878 -6.0535 -2.6831 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865067914.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:15 Heat of formation + Delta-G solvation = -85.424646 kcal Electronic energy + Delta-G solvation = -29558.846174 eV Core-core repulsion = 25587.717244 eV Total energy + Delta-G solvation = -3971.128930 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.80580 -38.70955 -37.97296 -36.97257 -35.11388 -34.59995 -33.94725 -31.69837 -30.59286 -27.56016 -27.46090 -27.09128 -26.25671 -25.01724 -23.54520 -22.39264 -21.38403 -20.93226 -19.27989 -18.67791 -17.84734 -16.92159 -16.73308 -16.16476 -15.96411 -15.45584 -15.03210 -14.70843 -14.60946 -14.45750 -14.15708 -14.00415 -13.91154 -13.28554 -12.89366 -12.79294 -12.72158 -12.59736 -12.26120 -12.00290 -11.97348 -11.92781 -11.58349 -11.53781 -11.46854 -11.40810 -11.35342 -11.29659 -11.18306 -10.80672 -10.63726 -10.46806 -10.38284 -10.37205 -10.19851 -9.99584 -9.84423 -8.97118 -8.77034 -8.29502 -7.61611 -6.28742 -3.84616 2.20311 2.94055 3.21691 3.26555 3.31066 3.69265 3.87208 3.95850 4.18669 4.61185 4.64056 4.68163 4.79563 4.83812 4.92401 5.02361 5.13767 5.18280 5.31370 5.36777 5.40759 5.42845 5.53520 5.55297 5.58542 5.59528 5.64697 5.68487 5.76012 5.83925 5.87038 5.91748 6.06850 6.10787 6.16140 6.20338 6.21290 6.24795 6.38191 6.49144 6.55319 6.68921 6.88925 7.21875 7.47424 7.60158 8.18526 8.45801 8.52896 9.22751 9.47206 10.03442 10.76320 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.015257 B = 0.003212 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.800369 B = 8716.400519 C = 9616.258987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.446 5.446 3 C -0.306 4.306 4 H 0.097 0.903 5 C 0.030 3.970 6 N -0.884 5.884 7 Si 0.926 3.074 8 H -0.274 1.274 9 H -0.285 1.285 10 H -0.273 1.273 11 C 0.453 3.547 12 O -0.593 6.593 13 C -0.144 4.144 14 C 0.152 3.848 15 N -0.590 5.590 16 C 0.145 3.855 17 C -0.169 4.169 18 C -0.175 4.175 19 C -0.175 4.175 20 C 0.650 3.350 21 O -0.563 6.563 22 O -0.362 6.362 23 C 0.135 3.865 24 C -0.183 4.183 25 C -0.139 4.139 26 C -0.184 4.184 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.024 0.976 30 H 0.267 0.733 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.058 0.942 43 H 0.067 0.933 44 H 0.089 0.911 45 H 0.065 0.935 46 H 0.077 0.923 47 H 0.065 0.935 48 H 0.089 0.911 49 H 0.067 0.933 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.983 -20.566 -1.143 21.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.165 5.165 3 C -0.434 4.434 4 H 0.115 0.885 5 C -0.173 4.173 6 N -0.523 5.523 7 Si 0.752 3.248 8 H -0.199 1.199 9 H -0.210 1.210 10 H -0.198 1.198 11 C 0.241 3.759 12 O -0.478 6.478 13 C -0.185 4.185 14 C 0.031 3.969 15 N -0.329 5.329 16 C 0.022 3.978 17 C -0.188 4.188 18 C -0.212 4.212 19 C -0.213 4.213 20 C 0.404 3.596 21 O -0.451 6.451 22 O -0.277 6.277 23 C 0.098 3.902 24 C -0.241 4.241 25 C -0.196 4.196 26 C -0.241 4.241 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.043 0.957 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.123 0.877 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.108 0.892 45 H 0.085 0.915 46 H 0.096 0.904 47 H 0.084 0.916 48 H 0.108 0.892 49 H 0.086 0.914 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.461 -20.297 -1.433 21.068 hybrid contribution -0.130 0.994 -0.029 1.002 sum -5.591 -19.304 -1.462 20.150 Atomic orbital electron populations 1.21446 0.81347 0.99798 1.00418 1.43546 1.05406 1.04770 1.62748 1.19604 1.00586 0.84263 1.38952 0.88525 1.25330 0.96643 1.00071 0.95211 1.69984 1.19269 1.29631 1.33421 0.86011 0.79034 0.81016 0.78706 1.19943 1.21001 1.19791 1.19901 0.87911 0.84698 0.83438 1.90509 1.13974 1.87293 1.56073 1.21870 0.99423 0.94033 1.03180 1.21258 0.92592 0.78356 1.04682 1.46974 1.58547 1.23975 1.03427 1.21170 0.94104 0.97464 0.85088 1.22773 0.98710 1.05048 0.92263 1.23079 1.03457 0.94544 1.00156 1.22911 1.00650 0.96558 1.01170 1.18060 0.77472 0.79641 0.84391 1.90915 1.58625 1.65694 1.29915 1.86308 1.69831 1.36073 1.35522 1.22009 0.95255 0.92963 0.79943 1.22516 0.97282 1.04256 1.00007 1.21836 1.00370 0.94559 1.02824 1.22513 0.99942 1.01640 0.99997 0.93101 0.90838 0.95739 0.92286 0.90405 0.89957 0.89350 0.88921 0.89581 0.89897 0.87682 0.88519 0.88585 0.88926 0.88840 0.92342 0.91372 0.89210 0.91543 0.90375 0.91632 0.89189 0.91377 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.61 8.44 59.85 0.51 3.11 16 2 N -0.45 -11.69 3.01 -122.19 -0.37 -12.06 16 3 C -0.31 -8.71 9.24 -14.93 -0.14 -8.84 16 4 H 0.10 2.87 7.45 -52.49 -0.39 2.48 16 5 C 0.03 0.81 5.04 -17.47 -0.09 0.73 16 6 N -0.88 -23.82 10.83 55.50 0.60 -23.22 16 7 Si 0.93 21.07 29.57 -169.99 -5.03 16.05 16 8 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 11 C 0.45 11.19 7.63 -10.99 -0.08 11.11 16 12 O -0.59 -16.46 15.69 5.55 0.09 -16.37 16 13 C -0.14 -2.72 4.63 -27.88 -0.13 -2.85 16 14 C 0.15 2.60 4.74 -4.04 -0.02 2.58 16 15 N -0.59 -8.47 2.47 -179.49 -0.44 -8.91 16 16 C 0.14 1.63 5.74 -4.04 -0.02 1.61 16 17 C -0.17 -1.87 5.46 -90.62 -0.49 -2.36 16 18 C -0.18 -1.91 10.10 -26.73 -0.27 -2.18 16 19 C -0.18 -1.61 10.25 -26.73 -0.27 -1.88 16 20 C 0.65 9.94 7.70 54.06 0.42 10.35 16 21 O -0.56 -10.06 11.46 -19.28 -0.22 -10.28 16 22 O -0.36 -4.71 8.71 -40.33 -0.35 -5.06 16 23 C 0.14 1.48 1.13 -90.62 -0.10 1.37 16 24 C -0.18 -1.98 8.37 37.16 0.31 -1.67 16 25 C -0.14 -1.08 8.85 37.16 0.33 -0.76 16 26 C -0.18 -2.06 8.37 37.15 0.31 -1.75 16 27 H 0.05 1.18 7.83 -51.93 -0.41 0.77 16 28 H 0.07 1.78 6.80 -51.93 -0.35 1.43 16 29 H 0.02 0.48 6.61 -51.93 -0.34 0.13 16 30 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 31 H 0.08 1.49 7.41 -51.93 -0.38 1.10 16 32 H 0.08 1.45 7.47 -51.93 -0.39 1.06 16 33 H 0.09 1.46 7.85 -51.93 -0.41 1.05 16 34 H 0.09 1.79 7.38 -51.93 -0.38 1.40 16 35 H 0.09 0.88 7.37 -51.93 -0.38 0.50 16 36 H 0.08 0.85 7.63 -51.93 -0.40 0.46 16 37 H 0.11 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.10 1.04 8.03 -51.93 -0.42 0.62 16 39 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 1.23 5.88 -51.93 -0.31 0.92 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.09 1.28 5.88 -51.93 -0.31 0.97 16 49 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 400.23 15.07 6.03 6.03 Total: -1.00 -32.08 400.23 -8.09 -40.17 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -8.65 Total: 5.10 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: 0.25 Total: 8.56 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: -0.21 Total: -44.19 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.49 Total: -31.71 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.08 -8.09 -40.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865067914.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.259 kcal (2) G-P(sol) polarization free energy of solvation -32.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds