Wall clock time and date at job start Tue Mar 31 2020 14:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37098 * 120.00001 * 2 1 4 4 H 1.07995 * 119.99928 * 204.38949 * 3 2 1 5 5 C 1.38946 * 119.99901 * 24.39922 * 3 2 1 6 6 N 1.31411 * 120.00463 * 12.63859 * 5 3 2 7 7 Si 1.86803 * 119.99758 * 192.63637 * 5 3 2 8 8 H 1.48503 * 109.47202 * 60.00071 * 7 5 3 9 9 H 1.48504 * 109.47368 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47369 * 299.99853 * 7 5 3 11 11 C 1.34776 * 119.99536 * 180.02562 * 2 1 3 12 12 O 1.21288 * 119.99640 * 180.02562 * 11 2 1 13 13 C 1.50697 * 120.00231 * 359.97438 * 11 2 1 14 14 C 1.53003 * 109.47137 * 180.02562 * 13 11 2 15 15 N 1.46497 * 109.46933 * 179.97438 * 14 13 11 16 16 C 1.46495 * 120.00615 * 269.99759 * 15 14 13 17 17 C 1.53006 * 109.47060 * 89.99876 * 16 15 14 18 18 C 1.52992 * 117.50164 * 243.62770 * 17 16 15 19 19 C 1.53002 * 117.49803 * 175.00246 * 17 16 15 20 20 C 1.34779 * 119.99772 * 90.00251 * 15 14 13 21 21 O 1.21509 * 119.99923 * 359.97438 * 20 15 14 22 22 O 1.34643 * 120.00204 * 179.97438 * 20 15 14 23 23 C 1.45198 * 117.00082 * 179.97438 * 22 20 15 24 24 C 1.53000 * 109.47194 * 60.00248 * 23 22 20 25 25 C 1.52999 * 109.46774 * 180.02562 * 23 22 20 26 26 C 1.52995 * 109.46970 * 299.99839 * 23 22 20 27 27 H 1.09002 * 109.47362 * 265.86597 * 1 2 3 28 28 H 1.08998 * 109.46619 * 25.85721 * 1 2 3 29 29 H 1.08996 * 109.47560 * 145.85964 * 1 2 3 30 30 H 0.96998 * 120.00219 * 179.97438 * 6 5 3 31 31 H 1.08993 * 109.47213 * 60.00311 * 13 11 2 32 32 H 1.09005 * 109.46984 * 300.00062 * 13 11 2 33 33 H 1.09003 * 109.46917 * 59.99940 * 14 13 11 34 34 H 1.08992 * 109.47074 * 300.00097 * 14 13 11 35 35 H 1.08992 * 109.47797 * 210.00399 * 16 15 14 36 36 H 1.09004 * 109.46876 * 330.00699 * 16 15 14 37 37 H 1.08998 * 115.54678 * 29.33720 * 17 16 15 38 38 H 1.09000 * 117.49968 * 0.02562 * 18 17 16 39 39 H 1.09003 * 117.50154 * 145.02305 * 18 17 16 40 40 H 1.09000 * 117.49807 * 214.98350 * 19 17 16 41 41 H 1.08999 * 117.49723 * 0.02562 * 19 17 16 42 42 H 1.08992 * 109.47259 * 59.99579 * 24 23 22 43 43 H 1.08995 * 109.47244 * 179.97438 * 24 23 22 44 44 H 1.09003 * 109.46663 * 299.99854 * 24 23 22 45 45 H 1.08995 * 109.47490 * 60.00359 * 25 23 22 46 46 H 1.09004 * 109.46849 * 179.97438 * 25 23 22 47 47 H 1.09000 * 109.47378 * 299.99917 * 25 23 22 48 48 H 1.09005 * 109.47379 * 60.00708 * 26 23 22 49 49 H 1.09004 * 109.46994 * 180.02562 * 26 23 22 50 50 H 1.08997 * 109.47852 * 300.00085 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1582 1.2290 -0.3862 5 6 1.5489 2.3369 0.4971 6 7 0.4347 2.2491 1.1883 7 14 2.3239 4.0072 0.1829 8 1 2.4042 4.2483 -1.2803 9 1 1.4936 5.0648 0.8134 10 1 3.6896 4.0367 0.7651 11 6 2.1388 -1.1672 -0.0005 12 8 3.3517 -1.1673 -0.0001 13 6 1.3853 -2.4723 -0.0005 14 6 2.3795 -3.6353 -0.0005 15 7 1.6469 -4.9039 0.0001 16 6 1.2811 -5.5380 1.2690 17 6 -0.0955 -5.0374 1.7111 18 6 -0.1724 -4.2408 3.0150 19 6 -0.7105 -5.6720 2.9601 20 6 1.3096 -5.4878 -1.1669 21 8 1.6127 -4.9618 -2.2194 22 8 0.6368 -6.6541 -1.1664 23 6 0.3062 -7.2250 -2.4599 24 6 1.5931 -7.4932 -3.2429 25 6 -0.4521 -8.5385 -2.2588 26 6 -0.5711 -6.2446 -3.2408 27 1 -0.3634 -0.0741 1.0250 28 1 -0.3632 0.9248 -0.4482 29 1 -0.3634 -0.8505 -0.5767 30 1 0.0149 3.0516 1.5356 31 1 0.7584 -2.5298 -0.8902 32 1 0.7590 -2.5302 0.8897 33 1 3.0062 -3.5775 0.8895 34 1 3.0061 -3.5776 -0.8904 35 1 1.2497 -6.6197 1.1390 36 1 2.0208 -5.2846 2.0284 37 1 -0.7728 -4.7522 0.9060 38 1 0.7579 -4.0729 3.5578 39 1 -0.9002 -3.4311 3.0680 40 1 -1.7923 -5.8039 2.9769 41 1 -0.1341 -6.4458 3.4671 42 1 2.2180 -8.1915 -2.6864 43 1 1.3450 -7.9221 -4.2136 44 1 2.1329 -6.5571 -3.3860 45 1 -1.3689 -8.3471 -1.7012 46 1 -0.7007 -8.9668 -3.2298 47 1 0.1725 -9.2371 -1.7022 48 1 -0.0312 -5.3085 -3.3842 49 1 -0.8196 -6.6733 -4.2117 50 1 -1.4878 -6.0535 -2.6831 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865067914.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:14 Heat of formation + Delta-G solvation = -103.063407 kcal Electronic energy + Delta-G solvation = -29559.611048 eV Core-core repulsion = 25587.717244 eV Total energy + Delta-G solvation = -3971.893804 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.92329 -40.45800 -39.15151 -37.97946 -36.76685 -36.14039 -34.92627 -33.72466 -32.12616 -28.46403 -28.33178 -28.23517 -27.91031 -26.75683 -25.18872 -23.17982 -22.55159 -21.83458 -20.54256 -20.31272 -19.00448 -18.85899 -18.14694 -17.48891 -17.23737 -16.72574 -16.46747 -16.28480 -15.95833 -15.85922 -15.46980 -15.11610 -15.01770 -14.48790 -14.43822 -14.17898 -13.66864 -13.61531 -13.47907 -13.28356 -13.21646 -13.15606 -13.02745 -12.84050 -12.81347 -12.68419 -12.54812 -12.42737 -12.35206 -12.28350 -12.24428 -12.14452 -12.03892 -11.34466 -11.32897 -11.04019 -11.01165 -10.78677 -10.43076 -9.85109 -9.68072 -8.35122 -6.00220 1.09495 1.38588 1.40485 1.51035 1.75799 2.00886 2.27805 2.74433 2.96480 3.07629 3.15485 3.79268 3.82125 3.84695 3.95084 3.98875 3.99710 4.02223 4.10190 4.22499 4.36176 4.47070 4.51354 4.54264 4.64502 4.65099 4.71172 4.78368 4.80094 4.84143 4.87436 4.88020 4.92671 4.96172 5.01224 5.10704 5.16345 5.27482 5.30669 5.32318 5.32709 5.36325 5.43623 5.47491 5.52794 6.09051 6.32358 6.46536 7.14848 7.30049 7.44748 8.01056 8.68182 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.015257 B = 0.003212 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.800369 B = 8716.400519 C = 9616.258987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.462 5.462 3 C -0.348 4.348 4 H 0.071 0.929 5 C -0.001 4.001 6 N -0.895 5.895 7 Si 0.989 3.011 8 H -0.269 1.269 9 H -0.268 1.268 10 H -0.275 1.275 11 C 0.443 3.557 12 O -0.631 6.631 13 C -0.122 4.122 14 C 0.165 3.835 15 N -0.587 5.587 16 C 0.144 3.856 17 C -0.178 4.178 18 C -0.189 4.189 19 C -0.150 4.150 20 C 0.648 3.352 21 O -0.594 6.594 22 O -0.357 6.357 23 C 0.124 3.876 24 C -0.180 4.180 25 C -0.131 4.131 26 C -0.181 4.181 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.274 0.726 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.112 0.888 42 H 0.064 0.936 43 H 0.090 0.910 44 H 0.055 0.945 45 H 0.070 0.930 46 H 0.100 0.900 47 H 0.072 0.928 48 H 0.055 0.945 49 H 0.090 0.910 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.425 -22.267 -0.539 23.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.181 5.181 3 C -0.476 4.476 4 H 0.089 0.911 5 C -0.203 4.203 6 N -0.533 5.533 7 Si 0.812 3.188 8 H -0.194 1.194 9 H -0.193 1.193 10 H -0.201 1.201 11 C 0.232 3.768 12 O -0.519 6.519 13 C -0.163 4.163 14 C 0.042 3.958 15 N -0.326 5.326 16 C 0.022 3.978 17 C -0.197 4.197 18 C -0.226 4.226 19 C -0.188 4.188 20 C 0.403 3.597 21 O -0.485 6.485 22 O -0.271 6.271 23 C 0.087 3.913 24 C -0.237 4.237 25 C -0.188 4.188 26 C -0.238 4.238 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.118 0.882 33 H 0.113 0.887 34 H 0.084 0.916 35 H 0.120 0.880 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.115 0.885 39 H 0.104 0.896 40 H 0.120 0.880 41 H 0.130 0.870 42 H 0.083 0.917 43 H 0.109 0.891 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.119 0.881 47 H 0.091 0.909 48 H 0.074 0.926 49 H 0.109 0.891 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.953 -22.034 -0.809 23.119 hybrid contribution 0.286 1.479 -0.230 1.524 sum -6.667 -20.554 -1.039 21.633 Atomic orbital electron populations 1.21376 0.79611 1.00322 1.00519 1.43818 1.06622 1.04758 1.62866 1.19589 1.00490 0.86208 1.41294 0.91120 1.26082 0.97028 1.02897 0.94246 1.70045 1.19631 1.30871 1.32799 0.85073 0.78117 0.76816 0.78794 1.19407 1.19277 1.20061 1.20805 0.87854 0.86089 0.82047 1.90471 1.15860 1.88093 1.57437 1.21701 0.99204 0.91537 1.03854 1.20920 0.92042 0.79129 1.03687 1.46902 1.58140 1.22969 1.04547 1.21393 0.94548 0.98087 0.83770 1.22663 0.98490 1.06292 0.92293 1.23101 1.03595 0.95614 1.00322 1.22999 1.01349 0.95603 0.98807 1.18203 0.77319 0.80128 0.84049 1.90916 1.59735 1.66647 1.31179 1.86325 1.69079 1.34751 1.36938 1.22411 0.95553 0.94167 0.79148 1.22471 0.97099 1.02734 1.01419 1.21850 1.00035 0.92558 1.04396 1.22473 0.99539 1.00359 1.01439 0.93478 0.92440 0.92556 0.91635 0.90353 0.88158 0.88710 0.91619 0.87976 0.88683 0.89213 0.88474 0.89570 0.88042 0.86962 0.91683 0.89128 0.92589 0.91134 0.88105 0.90888 0.92643 0.89114 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.75 8.44 127.77 1.08 6.82 16 2 N -0.46 -24.81 3.01 -658.90 -1.98 -26.79 16 3 C -0.35 -20.38 9.24 84.04 0.78 -19.61 16 4 H 0.07 4.41 7.45 -2.91 -0.02 4.39 16 5 C 0.00 -0.03 5.04 84.93 0.43 0.40 16 6 N -0.90 -48.07 10.83 21.66 0.23 -47.84 16 7 Si 0.99 43.24 29.57 68.60 2.03 45.27 16 8 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 9 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 10 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 11 C 0.44 22.51 7.63 87.66 0.67 23.18 16 12 O -0.63 -36.43 15.69 -3.05 -0.05 -36.47 16 13 C -0.12 -4.66 4.63 29.85 0.14 -4.53 16 14 C 0.16 5.71 4.74 86.38 0.41 6.12 16 15 N -0.59 -16.61 2.47 -952.18 -2.35 -18.96 16 16 C 0.14 2.99 5.74 86.38 0.50 3.48 16 17 C -0.18 -3.64 5.46 -10.79 -0.06 -3.70 16 18 C -0.19 -3.85 10.10 30.59 0.31 -3.54 16 19 C -0.15 -2.34 10.25 30.60 0.31 -2.03 16 20 C 0.65 19.81 7.70 129.79 1.00 20.81 16 21 O -0.59 -21.98 11.46 19.81 0.23 -21.75 16 22 O -0.36 -8.85 8.71 -55.52 -0.48 -9.34 16 23 C 0.12 2.51 1.13 -10.80 -0.01 2.50 16 24 C -0.18 -3.71 8.37 71.98 0.60 -3.11 16 25 C -0.13 -1.65 8.85 71.98 0.64 -1.01 16 26 C -0.18 -3.90 8.37 71.98 0.60 -3.30 16 27 H 0.05 2.17 7.83 -2.39 -0.02 2.15 16 28 H 0.06 2.80 6.80 -2.39 -0.02 2.78 16 29 H 0.06 2.18 6.61 -2.39 -0.02 2.17 16 30 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 31 H 0.08 3.01 7.41 -2.39 -0.02 2.99 16 32 H 0.10 3.49 7.47 -2.38 -0.02 3.47 16 33 H 0.09 3.16 7.85 -2.39 -0.02 3.14 16 34 H 0.07 2.65 7.38 -2.39 -0.02 2.63 16 35 H 0.10 1.82 7.37 -2.39 -0.02 1.80 16 36 H 0.09 1.76 7.63 -2.38 -0.02 1.74 16 37 H 0.09 2.14 8.14 -2.39 -0.02 2.13 16 38 H 0.10 1.96 8.03 -2.39 -0.02 1.94 16 39 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.06 1.57 5.88 -2.39 -0.01 1.55 16 45 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 47 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.05 1.61 5.88 -2.38 -0.01 1.60 16 49 H 0.09 1.48 8.14 -2.38 -0.02 1.47 16 50 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -71.88 400.23 5.92 -65.96 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: 0.91 Total: 27.42 kcal Atomic # 6 Polarization: 15.11 SS G_CDS: 7.39 Total: 22.50 kcal Atomic # 7 Polarization: -89.49 SS G_CDS: -4.10 Total: -93.60 kcal Atomic # 8 Polarization: -67.25 SS G_CDS: -0.30 Total: -67.56 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -71.88 5.92 -65.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865067914.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.101 kcal (2) G-P(sol) polarization free energy of solvation -71.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds