Wall clock time and date at job start Tue Mar 31 2020 14:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47388 * 2 1 4 4 C 1.52999 * 109.46974 * 240.00144 * 2 1 3 5 5 O 1.45200 * 109.47464 * 120.00010 * 2 1 3 6 6 C 1.34635 * 116.99358 * 59.99632 * 5 2 1 7 7 O 1.21512 * 120.00767 * 0.02562 * 6 5 2 8 8 N 1.34781 * 120.00035 * 180.02562 * 6 5 2 9 9 C 1.46490 * 120.00422 * 180.02562 * 8 6 5 10 10 H 1.09003 * 109.47141 * 35.00174 * 9 8 6 11 11 C 1.52997 * 109.47358 * 274.99736 * 9 8 6 12 12 C 1.53003 * 109.47289 * 300.00294 * 11 9 8 13 13 C 1.52993 * 109.46750 * 299.99353 * 12 11 9 14 14 C 1.52999 * 109.47055 * 60.00342 * 13 12 11 15 15 H 1.09001 * 109.47339 * 59.99530 * 14 13 12 16 16 C 1.50700 * 109.47367 * 179.97438 * 14 13 12 17 17 O 1.21278 * 120.00429 * 119.99857 * 16 14 13 18 18 N 1.34778 * 119.99743 * 299.99939 * 16 14 13 19 19 C 1.46507 * 120.00131 * 179.97438 * 18 16 14 20 20 C 1.50697 * 109.47006 * 180.02562 * 19 18 16 21 21 H 1.07991 * 120.00449 * 359.72165 * 20 19 18 22 22 C 1.37885 * 119.99686 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99913 * 359.72095 * 22 20 19 24 24 Si 1.86798 * 119.99766 * 179.72528 * 22 20 19 25 25 H 1.48490 * 109.47339 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47239 * 120.00108 * 24 22 20 27 27 H 1.48504 * 109.46636 * 239.99667 * 24 22 20 28 28 C 1.53003 * 109.47062 * 299.99467 * 14 13 12 29 29 H 1.08998 * 109.46893 * 300.00230 * 1 2 3 30 30 H 1.09000 * 109.47278 * 59.99977 * 1 2 3 31 31 H 1.08994 * 109.47131 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47445 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.46930 * 300.00236 * 3 2 1 34 34 H 1.08998 * 109.47292 * 60.00014 * 3 2 1 35 35 H 1.09000 * 109.47519 * 299.99827 * 4 2 1 36 36 H 1.09003 * 109.47280 * 60.00366 * 4 2 1 37 37 H 1.09003 * 109.47130 * 180.02562 * 4 2 1 38 38 H 0.97005 * 119.99310 * 359.97438 * 8 6 5 39 39 H 1.09006 * 109.46871 * 60.00289 * 11 9 8 40 40 H 1.09001 * 109.47472 * 180.02562 * 11 9 8 41 41 H 1.08993 * 109.47243 * 59.99766 * 12 11 9 42 42 H 1.09004 * 109.46584 * 179.97438 * 12 11 9 43 43 H 1.08993 * 109.47585 * 300.00204 * 13 12 11 44 44 H 1.09007 * 109.47164 * 180.02562 * 13 12 11 45 45 H 0.97004 * 120.00319 * 359.97438 * 18 16 14 46 46 H 1.08998 * 109.47049 * 59.99555 * 19 18 16 47 47 H 1.09001 * 109.46896 * 299.99826 * 19 18 16 48 48 H 0.97000 * 119.99651 * 180.02562 * 23 22 20 49 49 H 1.09004 * 109.46584 * 180.02562 * 28 14 13 50 50 H 1.08993 * 109.47243 * 299.99933 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3382 7 8 0.9515 -2.5097 0.5035 8 7 2.0672 -2.6655 2.4170 9 6 1.6740 -4.0669 2.5830 10 1 1.6282 -4.5495 1.6067 11 6 0.2991 -4.1352 3.2506 12 6 0.3633 -3.4578 4.6210 13 6 1.3918 -4.1758 5.4970 14 6 2.7667 -4.1075 4.8294 15 1 3.0593 -3.0648 4.7060 16 6 3.7800 -4.8142 5.6926 17 8 4.3907 -5.7663 5.2550 18 7 4.0074 -4.3882 6.9508 19 6 4.9920 -5.0756 7.7902 20 6 5.0548 -4.4082 9.1399 21 1 4.4276 -3.5544 9.3498 22 6 5.9167 -4.8844 10.1050 23 7 6.6801 -5.9244 9.8495 24 14 6.0000 -4.0524 11.7754 25 1 5.0481 -2.9132 11.8091 26 1 5.6406 -5.0299 12.8338 27 1 7.3783 -3.5522 12.0110 28 6 2.7025 -4.7849 3.4590 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2073 -2.1393 37 1 3.1300 -0.7216 -1.2491 38 1 2.6269 -2.2366 3.0832 39 1 -0.4337 -3.6237 2.6265 40 1 0.0067 -5.1779 3.3745 41 1 0.6558 -2.4151 4.4976 42 1 -0.6164 -3.5062 5.0964 43 1 1.0992 -5.2185 5.6205 44 1 1.4373 -3.6935 6.4736 45 1 3.5193 -3.6265 7.3008 46 1 5.9717 -5.0274 7.3147 47 1 4.6992 -6.1181 7.9141 48 1 7.2862 -6.2596 10.5287 49 1 3.6822 -4.7366 2.9837 50 1 2.4100 -5.8276 3.5825 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867873636.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:07 Heat of formation + Delta-G solvation = -149.869528 kcal Electronic energy + Delta-G solvation = -28726.873660 eV Core-core repulsion = 24752.950189 eV Total energy + Delta-G solvation = -3973.923470 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.08435 -39.86459 -38.18858 -36.72481 -34.50018 -34.24404 -33.57311 -32.33702 -31.04015 -29.84100 -27.69123 -27.64393 -27.23163 -23.97327 -23.40627 -22.34764 -22.06051 -20.36645 -19.87253 -19.13021 -18.48744 -17.15777 -16.71046 -16.34638 -15.85091 -15.68584 -15.18748 -15.04358 -14.76961 -14.69796 -14.50402 -14.20157 -13.85900 -13.75446 -13.21492 -12.79816 -12.76572 -12.54903 -12.41306 -12.31156 -12.26462 -12.16698 -12.11905 -11.97102 -11.74247 -11.71208 -11.53950 -11.32733 -10.97487 -10.93225 -10.86119 -10.60782 -10.49897 -10.34913 -10.31522 -10.19493 -9.40359 -9.27350 -8.97642 -8.76287 -7.90717 -6.19130 -4.26032 2.02698 2.71768 3.21530 3.28810 3.31533 3.31796 3.93758 4.02770 4.33083 4.43876 4.48372 4.56460 4.62509 4.67590 4.79262 4.99080 5.09723 5.17251 5.17798 5.23951 5.25214 5.31180 5.32709 5.40296 5.44295 5.50062 5.53968 5.57878 5.58864 5.70309 5.79764 5.88031 5.93909 6.00133 6.01555 6.06097 6.15476 6.20420 6.26744 6.32345 6.42568 7.28276 7.29749 7.41003 7.49157 7.63949 7.94712 8.25734 8.60087 8.75471 9.07254 9.40812 10.91076 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.018729 B = 0.002351 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.646535 B =11909.104692 C =12428.422379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.137 3.863 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.366 6.366 6 C 0.650 3.350 7 O -0.571 6.571 8 N -0.702 5.702 9 C 0.164 3.836 10 H 0.094 0.906 11 C -0.133 4.133 12 C -0.116 4.116 13 C -0.112 4.112 14 C -0.108 4.108 15 H 0.087 0.913 16 C 0.502 3.498 17 O -0.556 6.556 18 N -0.711 5.711 19 C 0.249 3.751 20 C -0.542 4.542 21 H 0.063 0.937 22 C 0.063 3.937 23 N -0.885 5.885 24 Si 0.903 3.097 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.282 1.282 28 C -0.106 4.106 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.405 0.595 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.390 0.610 46 H 0.026 0.974 47 H 0.027 0.973 48 H 0.265 0.735 49 H 0.079 0.921 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.975 12.360 -18.499 26.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.100 3.900 3 C -0.199 4.199 4 C -0.241 4.241 5 O -0.281 6.281 6 C 0.404 3.596 7 O -0.461 6.461 8 N -0.362 5.362 9 C 0.061 3.939 10 H 0.112 0.888 11 C -0.171 4.171 12 C -0.153 4.153 13 C -0.150 4.150 14 C -0.130 4.130 15 H 0.105 0.895 16 C 0.286 3.714 17 O -0.435 6.435 18 N -0.359 5.359 19 C 0.128 3.872 20 C -0.581 4.581 21 H 0.081 0.919 22 C -0.141 4.141 23 N -0.522 5.522 24 Si 0.731 3.269 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.144 4.144 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.241 0.759 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.223 0.777 46 H 0.044 0.956 47 H 0.045 0.955 48 H 0.075 0.925 49 H 0.097 0.903 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.716 11.342 -19.161 26.152 hybrid contribution 0.200 1.018 1.449 1.782 sum -13.516 12.360 -17.712 25.479 Atomic orbital electron populations 1.22508 0.94043 1.05064 1.02376 1.22040 0.94307 0.91501 0.82170 1.21864 1.02345 0.92592 1.03064 1.22518 1.01616 1.03527 0.96409 1.86316 1.71603 1.23815 1.46367 1.18124 0.78812 0.80448 0.82260 1.90881 1.41330 1.70343 1.43509 1.44992 1.55138 1.12729 1.23323 1.21051 0.94211 0.78618 1.00021 0.88811 1.21981 0.96709 1.01872 0.96577 1.21498 0.99149 0.99582 0.95086 1.21558 0.92744 1.01980 0.98700 1.21339 0.95575 1.00490 0.95617 0.89519 1.20363 0.83521 0.84663 0.82861 1.90661 1.50891 1.28644 1.73291 1.46480 1.42450 1.33809 1.13117 1.19107 0.86850 0.92920 0.88315 1.21256 1.23814 1.15538 0.97476 0.91882 1.24961 0.95062 0.94945 0.99097 1.69986 1.24091 1.23533 1.34638 0.86367 0.77997 0.79329 0.83257 1.19638 1.20788 1.20797 1.21649 0.99333 1.00227 0.93183 0.92212 0.91276 0.89329 0.91422 0.90223 0.91452 0.89320 0.91260 0.92161 0.75901 0.91364 0.90472 0.91921 0.91577 0.91026 0.90986 0.77737 0.95603 0.95544 0.92495 0.90278 0.89026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 8.37 37.16 0.31 -1.26 16 2 C 0.14 1.23 1.13 -90.62 -0.10 1.13 16 3 C -0.14 -0.94 8.85 37.16 0.33 -0.61 16 4 C -0.18 -1.62 8.37 37.16 0.31 -1.31 16 5 O -0.37 -4.04 9.94 -40.31 -0.40 -4.44 16 6 C 0.65 7.67 8.02 54.06 0.43 8.11 16 7 O -0.57 -7.67 11.54 -19.28 -0.22 -7.90 16 8 N -0.70 -7.24 4.24 -58.73 -0.25 -7.49 16 9 C 0.16 1.69 2.78 -67.94 -0.19 1.50 16 10 H 0.09 1.03 7.58 -51.93 -0.39 0.64 16 11 C -0.13 -1.26 5.60 -26.73 -0.15 -1.41 16 12 C -0.12 -1.06 5.77 -26.73 -0.15 -1.22 16 13 C -0.11 -1.23 5.10 -26.73 -0.14 -1.37 16 14 C -0.11 -1.38 2.35 -91.77 -0.22 -1.59 16 15 H 0.09 0.95 6.51 -51.93 -0.34 0.61 16 16 C 0.50 9.38 7.15 -10.98 -0.08 9.31 16 17 O -0.56 -12.78 15.98 5.56 0.09 -12.69 16 18 N -0.71 -14.33 5.44 -61.47 -0.33 -14.66 16 19 C 0.25 6.47 5.43 -5.19 -0.03 6.44 16 20 C -0.54 -14.48 9.28 -34.44 -0.32 -14.80 16 21 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 22 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 23 N -0.89 -25.86 13.29 55.43 0.74 -25.12 16 24 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 C -0.11 -1.26 4.18 -26.73 -0.11 -1.37 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.95 5.88 -51.93 -0.31 0.65 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.98 5.88 -51.93 -0.31 0.67 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.40 3.80 6.98 -40.82 -0.28 3.51 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.57 7.60 -51.93 -0.39 0.17 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.07 0.78 7.57 -51.92 -0.39 0.39 16 45 H 0.39 6.73 7.74 -40.82 -0.32 6.41 16 46 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 49 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 50 H 0.09 1.15 8.10 -51.93 -0.42 0.73 16 LS Contribution 392.82 15.07 5.92 5.92 Total: -1.00 -32.40 392.82 -8.28 -40.68 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -8.60 Total: 6.92 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -0.20 Total: 3.18 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: 0.15 Total: -47.28 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.53 Total: -25.03 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.40 -8.28 -40.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867873636.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.188 kcal (2) G-P(sol) polarization free energy of solvation -32.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds