Wall clock time and date at job start Tue Mar 31 2020 14:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47388 * 2 1 4 4 C 1.52999 * 109.46974 * 240.00144 * 2 1 3 5 5 O 1.45200 * 109.47464 * 120.00010 * 2 1 3 6 6 C 1.34635 * 116.99358 * 59.99632 * 5 2 1 7 7 O 1.21512 * 120.00767 * 0.02562 * 6 5 2 8 8 N 1.34781 * 120.00035 * 180.02562 * 6 5 2 9 9 C 1.46490 * 120.00422 * 180.02562 * 8 6 5 10 10 H 1.09003 * 109.47141 * 35.00174 * 9 8 6 11 11 C 1.52997 * 109.47358 * 274.99736 * 9 8 6 12 12 C 1.53003 * 109.47289 * 300.00294 * 11 9 8 13 13 C 1.52993 * 109.46750 * 299.99353 * 12 11 9 14 14 C 1.52999 * 109.47055 * 60.00342 * 13 12 11 15 15 H 1.09001 * 109.47339 * 59.99530 * 14 13 12 16 16 C 1.50700 * 109.47367 * 179.97438 * 14 13 12 17 17 O 1.21278 * 120.00429 * 119.99857 * 16 14 13 18 18 N 1.34778 * 119.99743 * 299.99939 * 16 14 13 19 19 C 1.46507 * 120.00131 * 179.97438 * 18 16 14 20 20 C 1.50697 * 109.47006 * 180.02562 * 19 18 16 21 21 H 1.07991 * 120.00449 * 359.72165 * 20 19 18 22 22 C 1.37885 * 119.99686 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99913 * 359.72095 * 22 20 19 24 24 Si 1.86798 * 119.99766 * 179.72528 * 22 20 19 25 25 H 1.48490 * 109.47339 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47239 * 120.00108 * 24 22 20 27 27 H 1.48504 * 109.46636 * 239.99667 * 24 22 20 28 28 C 1.53003 * 109.47062 * 299.99467 * 14 13 12 29 29 H 1.08998 * 109.46893 * 300.00230 * 1 2 3 30 30 H 1.09000 * 109.47278 * 59.99977 * 1 2 3 31 31 H 1.08994 * 109.47131 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47445 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.46930 * 300.00236 * 3 2 1 34 34 H 1.08998 * 109.47292 * 60.00014 * 3 2 1 35 35 H 1.09000 * 109.47519 * 299.99827 * 4 2 1 36 36 H 1.09003 * 109.47280 * 60.00366 * 4 2 1 37 37 H 1.09003 * 109.47130 * 180.02562 * 4 2 1 38 38 H 0.97005 * 119.99310 * 359.97438 * 8 6 5 39 39 H 1.09006 * 109.46871 * 60.00289 * 11 9 8 40 40 H 1.09001 * 109.47472 * 180.02562 * 11 9 8 41 41 H 1.08993 * 109.47243 * 59.99766 * 12 11 9 42 42 H 1.09004 * 109.46584 * 179.97438 * 12 11 9 43 43 H 1.08993 * 109.47585 * 300.00204 * 13 12 11 44 44 H 1.09007 * 109.47164 * 180.02562 * 13 12 11 45 45 H 0.97004 * 120.00319 * 359.97438 * 18 16 14 46 46 H 1.08998 * 109.47049 * 59.99555 * 19 18 16 47 47 H 1.09001 * 109.46896 * 299.99826 * 19 18 16 48 48 H 0.97000 * 119.99651 * 180.02562 * 23 22 20 49 49 H 1.09004 * 109.46584 * 180.02562 * 28 14 13 50 50 H 1.08993 * 109.47243 * 299.99933 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3382 7 8 0.9515 -2.5097 0.5035 8 7 2.0672 -2.6655 2.4170 9 6 1.6740 -4.0669 2.5830 10 1 1.6282 -4.5495 1.6067 11 6 0.2991 -4.1352 3.2506 12 6 0.3633 -3.4578 4.6210 13 6 1.3918 -4.1758 5.4970 14 6 2.7667 -4.1075 4.8294 15 1 3.0593 -3.0648 4.7060 16 6 3.7800 -4.8142 5.6926 17 8 4.3907 -5.7663 5.2550 18 7 4.0074 -4.3882 6.9508 19 6 4.9920 -5.0756 7.7902 20 6 5.0548 -4.4082 9.1399 21 1 4.4276 -3.5544 9.3498 22 6 5.9167 -4.8844 10.1050 23 7 6.6801 -5.9244 9.8495 24 14 6.0000 -4.0524 11.7754 25 1 5.0481 -2.9132 11.8091 26 1 5.6406 -5.0299 12.8338 27 1 7.3783 -3.5522 12.0110 28 6 2.7025 -4.7849 3.4590 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2073 -2.1393 37 1 3.1300 -0.7216 -1.2491 38 1 2.6269 -2.2366 3.0832 39 1 -0.4337 -3.6237 2.6265 40 1 0.0067 -5.1779 3.3745 41 1 0.6558 -2.4151 4.4976 42 1 -0.6164 -3.5062 5.0964 43 1 1.0992 -5.2185 5.6205 44 1 1.4373 -3.6935 6.4736 45 1 3.5193 -3.6265 7.3008 46 1 5.9717 -5.0274 7.3147 47 1 4.6992 -6.1181 7.9141 48 1 7.2862 -6.2596 10.5287 49 1 3.6822 -4.7366 2.9837 50 1 2.4100 -5.8276 3.5825 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867873636.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:06 Heat of formation + Delta-G solvation = -171.727600 kcal Electronic energy + Delta-G solvation = -28727.821497 eV Core-core repulsion = 24752.950189 eV Total energy + Delta-G solvation = -3974.871307 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.97487 -41.07896 -39.40123 -37.66142 -36.14951 -35.33369 -34.56639 -34.15721 -32.08786 -30.81185 -29.15220 -28.31696 -28.25645 -25.45947 -24.40371 -23.60993 -23.20700 -21.34089 -21.15320 -20.18498 -19.43937 -18.76296 -17.55736 -17.53682 -17.20379 -17.03626 -16.54907 -16.18332 -16.12430 -15.57679 -15.53172 -15.44848 -14.95134 -14.71847 -14.44138 -14.17515 -13.96788 -13.57248 -13.47019 -13.36405 -13.17613 -13.15275 -13.06186 -12.86538 -12.82099 -12.81527 -12.75419 -12.50827 -12.31729 -12.25047 -12.20372 -11.75134 -11.47027 -11.44623 -11.35395 -11.23082 -11.04733 -10.81244 -10.58735 -10.12412 -9.80678 -8.29013 -6.45206 1.22247 1.43667 1.44348 1.57838 1.77593 1.82200 2.32244 2.58088 3.06167 3.19283 3.55931 3.72071 3.77842 3.79645 3.84729 3.99263 4.02277 4.17177 4.28028 4.32305 4.44649 4.55970 4.61857 4.65640 4.66316 4.76573 4.80866 4.85919 4.90935 4.91903 5.04203 5.09973 5.12641 5.14704 5.16768 5.25253 5.26306 5.30057 5.32500 5.34008 5.40464 5.49118 5.50917 5.64103 5.70426 5.86003 6.44143 6.66487 6.92351 7.24235 7.39211 7.51018 8.83309 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.018729 B = 0.002351 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.646535 B =11909.104692 C =12428.422379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.125 3.875 3 C -0.137 4.137 4 C -0.180 4.180 5 O -0.372 6.372 6 C 0.648 3.352 7 O -0.590 6.590 8 N -0.696 5.696 9 C 0.174 3.826 10 H 0.087 0.913 11 C -0.129 4.129 12 C -0.106 4.106 13 C -0.108 4.108 14 C -0.093 4.093 15 H 0.114 0.886 16 C 0.499 3.501 17 O -0.602 6.602 18 N -0.705 5.705 19 C 0.265 3.735 20 C -0.553 4.553 21 H 0.084 0.916 22 C 0.003 3.997 23 N -0.931 5.931 24 Si 0.983 3.017 25 H -0.252 1.252 26 H -0.280 1.280 27 H -0.280 1.280 28 C -0.099 4.099 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.057 0.943 38 H 0.411 0.589 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.063 0.937 44 H 0.079 0.921 45 H 0.408 0.592 46 H -0.014 1.014 47 H -0.013 1.013 48 H 0.268 0.732 49 H 0.065 0.935 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.731 15.254 -18.149 28.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.089 3.911 3 C -0.194 4.194 4 C -0.237 4.237 5 O -0.287 6.287 6 C 0.401 3.599 7 O -0.481 6.481 8 N -0.357 5.357 9 C 0.071 3.929 10 H 0.105 0.895 11 C -0.167 4.167 12 C -0.143 4.143 13 C -0.146 4.146 14 C -0.114 4.114 15 H 0.131 0.869 16 C 0.286 3.714 17 O -0.484 6.484 18 N -0.355 5.355 19 C 0.142 3.858 20 C -0.591 4.591 21 H 0.102 0.898 22 C -0.197 4.197 23 N -0.570 5.570 24 Si 0.807 3.193 25 H -0.175 1.175 26 H -0.205 1.205 27 H -0.206 1.206 28 C -0.137 4.137 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.120 0.880 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.108 0.892 37 H 0.077 0.923 38 H 0.248 0.752 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.082 0.918 44 H 0.098 0.902 45 H 0.244 0.756 46 H 0.004 0.996 47 H 0.005 0.995 48 H 0.077 0.923 49 H 0.083 0.917 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.509 14.281 -18.823 28.263 hybrid contribution 0.766 0.077 1.236 1.456 sum -14.744 14.358 -17.587 27.071 Atomic orbital electron populations 1.22453 0.93725 1.03791 1.03520 1.22384 0.94738 0.92549 0.81470 1.21889 1.02293 0.90935 1.04303 1.22476 1.01443 1.02333 0.97466 1.86325 1.71675 1.23309 1.47378 1.18235 0.78674 0.80757 0.82198 1.90881 1.42207 1.70814 1.44184 1.44930 1.55013 1.12530 1.23179 1.20900 0.94181 0.78473 0.99337 0.89479 1.21949 0.95652 1.02449 0.96653 1.21435 0.99175 0.99462 0.94242 1.21564 0.91709 1.02034 0.99301 1.21308 0.94690 1.00888 0.94518 0.86867 1.21431 0.83530 0.83955 0.82460 1.90640 1.52792 1.30908 1.74082 1.46211 1.41734 1.34159 1.13347 1.18532 0.86290 0.91630 0.89300 1.21645 1.24006 1.15963 0.97449 0.89768 1.26065 0.94444 0.95445 1.03739 1.70146 1.25095 1.25434 1.36326 0.85129 0.78314 0.78549 0.77344 1.17526 1.20541 1.20577 1.21557 0.99201 1.00069 0.92922 0.91928 0.89274 0.91708 0.91527 0.88011 0.91186 0.91800 0.89159 0.92344 0.75233 0.91605 0.89770 0.91178 0.90023 0.91827 0.90249 0.75638 0.99616 0.99526 0.92311 0.91668 0.89843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.77 8.37 71.98 0.60 -2.17 16 2 C 0.12 2.05 1.13 -10.80 -0.01 2.04 16 3 C -0.14 -1.50 8.85 71.98 0.64 -0.86 16 4 C -0.18 -2.99 8.37 71.98 0.60 -2.39 16 5 O -0.37 -7.75 9.94 -55.45 -0.55 -8.31 16 6 C 0.65 14.71 8.02 129.79 1.04 15.75 16 7 O -0.59 -15.67 11.54 19.80 0.23 -15.44 16 8 N -0.70 -13.46 4.24 -570.14 -2.42 -15.87 16 9 C 0.17 3.43 2.78 44.99 0.13 3.55 16 10 H 0.09 1.89 7.58 -2.39 -0.02 1.87 16 11 C -0.13 -2.20 5.60 30.59 0.17 -2.03 16 12 C -0.11 -1.64 5.77 30.59 0.18 -1.46 16 13 C -0.11 -2.15 5.10 30.59 0.16 -1.99 16 14 C -0.09 -2.25 2.35 -11.54 -0.03 -2.28 16 15 H 0.11 2.21 6.51 -2.39 -0.02 2.19 16 16 C 0.50 18.90 7.15 87.66 0.63 19.53 16 17 O -0.60 -28.89 15.98 -3.02 -0.05 -28.94 16 18 N -0.71 -28.62 5.44 -466.78 -2.54 -31.16 16 19 C 0.27 14.35 5.43 85.63 0.46 14.81 16 20 C -0.55 -29.56 9.28 25.60 0.24 -29.32 16 21 H 0.08 4.05 7.60 -2.92 -0.02 4.03 16 22 C 0.00 0.14 5.46 84.66 0.46 0.60 16 23 N -0.93 -55.86 13.29 21.45 0.28 -55.57 16 24 Si 0.98 41.82 29.54 68.60 2.03 43.85 16 25 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 26 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 27 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 28 C -0.10 -2.33 4.18 30.60 0.13 -2.21 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 1.35 5.88 -2.39 -0.01 1.34 16 32 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.06 1.40 5.88 -2.39 -0.01 1.39 16 36 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.41 6.92 6.98 -92.70 -0.65 6.27 16 39 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.07 1.03 7.60 -2.39 -0.02 1.01 16 42 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.08 1.50 7.57 -2.38 -0.02 1.48 16 45 H 0.41 13.52 7.74 -92.71 -0.72 12.80 16 46 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 47 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 48 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 49 H 0.06 1.73 8.10 -2.39 -0.02 1.71 16 50 H 0.08 2.12 8.10 -2.39 -0.02 2.10 16 Total: -1.00 -73.35 392.82 1.95 -71.40 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: -0.43 Total: 28.45 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 5.39 Total: 11.59 kcal Atomic # 7 Polarization: -97.94 SS G_CDS: -4.67 Total: -102.61 kcal Atomic # 8 Polarization: -52.31 SS G_CDS: -0.37 Total: -52.68 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -73.35 1.95 -71.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867873636.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.325 kcal (2) G-P(sol) polarization free energy of solvation -73.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds