Wall clock time and date at job start Tue Mar 31 2020 14:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47142 * 2 1 4 4 C 1.52998 * 109.47179 * 240.00116 * 2 1 3 5 5 O 1.45196 * 109.47018 * 119.99752 * 2 1 3 6 6 C 1.34642 * 117.00040 * 60.00184 * 5 2 1 7 7 O 1.21515 * 119.99519 * 359.97438 * 6 5 2 8 8 N 1.34777 * 120.00308 * 179.97438 * 6 5 2 9 9 C 1.47860 * 126.92277 * 0.02562 * 8 6 5 10 10 C 1.58962 * 104.76837 * 182.29024 * 9 8 6 11 11 H 1.09010 * 116.83783 * 159.46785 * 10 9 8 12 12 C 1.57081 * 99.53251 * 32.28150 * 10 9 8 13 13 C 1.49277 * 126.92757 * 179.97438 * 8 6 5 14 14 H 1.09005 * 116.12170 * 16.02204 * 13 8 6 15 15 C 1.56006 * 104.12811 * 246.91316 * 13 8 6 16 16 N 1.48284 * 105.06584 * 287.95277 * 15 13 8 17 17 C 1.46906 * 110.99758 * 122.54942 * 16 15 13 18 18 C 1.52991 * 109.47185 * 76.42874 * 17 16 15 19 19 O 1.42898 * 109.47580 * 65.00113 * 18 17 16 20 20 C 1.42894 * 114.00428 * 179.97438 * 19 18 17 21 21 C 1.50696 * 109.47228 * 179.97438 * 20 19 18 22 22 H 1.07999 * 120.00263 * 0.02562 * 21 20 19 23 23 C 1.37882 * 120.00291 * 180.02562 * 21 20 19 24 24 N 1.31513 * 119.99788 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00354 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47502 * 180.02562 * 25 23 21 27 27 H 1.48498 * 109.47066 * 300.00349 * 25 23 21 28 28 H 1.48496 * 109.47172 * 60.00002 * 25 23 21 29 29 H 1.09000 * 109.46885 * 300.00183 * 1 2 3 30 30 H 1.09000 * 109.47272 * 59.99978 * 1 2 3 31 31 H 1.09000 * 109.47461 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47572 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47756 * 299.99911 * 3 2 1 34 34 H 1.09000 * 109.47380 * 60.00120 * 3 2 1 35 35 H 1.09000 * 109.46818 * 300.00264 * 4 2 1 36 36 H 1.09000 * 109.47095 * 59.99798 * 4 2 1 37 37 H 1.08990 * 109.47249 * 180.02562 * 4 2 1 38 38 H 1.09003 * 110.31554 * 300.82114 * 9 8 6 39 39 H 1.08995 * 110.31322 * 62.90989 * 9 8 6 40 40 H 1.09002 * 112.35586 * 192.43634 * 12 10 9 41 41 H 1.09004 * 112.35802 * 65.02606 * 12 10 9 42 42 H 1.09006 * 110.32185 * 169.05899 * 15 13 8 43 43 H 1.08996 * 110.41119 * 46.89850 * 15 13 8 44 44 H 1.09003 * 109.47072 * 316.42847 * 17 16 15 45 45 H 1.08999 * 109.47128 * 196.43194 * 17 16 15 46 46 H 1.08998 * 109.47515 * 304.99476 * 18 17 16 47 47 H 1.09001 * 109.46954 * 185.00155 * 18 17 16 48 48 H 1.09001 * 109.46846 * 60.00408 * 20 19 18 49 49 H 1.09001 * 109.47661 * 300.00272 * 20 19 18 50 50 H 0.96994 * 120.00016 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9509 -2.5094 0.5040 8 7 2.0680 -2.6657 2.4167 9 6 2.9189 -2.1681 3.5188 10 6 3.1307 -3.4263 4.4670 11 1 3.9853 -3.3948 5.1429 12 6 3.1085 -4.5699 3.3904 13 6 1.7614 -4.0905 2.7396 14 1 1.3751 -4.6961 1.9197 15 6 0.8680 -4.0080 4.0159 16 7 1.7899 -3.6093 5.1067 17 6 1.3393 -2.3674 5.7492 18 6 0.1603 -2.6712 6.6756 19 8 0.5987 -3.5123 7.7445 20 6 -0.4315 -3.8572 8.6727 21 6 0.1395 -4.7416 9.7510 22 1 1.1846 -5.0128 9.7299 23 6 -0.6725 -5.2046 10.7647 24 7 -1.9453 -4.8748 10.7902 25 14 0.0354 -6.3003 12.1017 26 1 -1.0354 -6.6599 13.0656 27 1 0.5849 -7.5364 11.4893 28 1 1.1194 -5.5762 12.8128 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1299 -0.7216 -1.2490 38 1 3.8778 -1.8243 3.1310 39 1 2.4152 -1.3611 4.0509 40 1 3.0230 -5.5598 3.8388 41 1 3.9492 -4.5055 2.6996 42 1 0.4248 -4.9803 4.2313 43 1 0.0881 -3.2577 3.8861 44 1 1.0270 -1.6556 4.9850 45 1 2.1574 -1.9412 6.3299 46 1 -0.6232 -3.1781 6.1124 47 1 -0.2307 -1.7392 7.0836 48 1 -1.2275 -4.3886 8.1511 49 1 -0.8345 -2.9496 9.1222 50 1 -2.5166 -5.2008 11.5031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879218942.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:01 Heat of formation + Delta-G solvation = -83.373363 kcal Electronic energy + Delta-G solvation = -29062.148936 eV Core-core repulsion = 25091.108956 eV Total energy + Delta-G solvation = -3971.039980 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.43615 -40.27563 -37.13283 -36.58884 -34.60469 -33.88432 -32.64104 -31.35671 -29.90038 -28.05927 -27.72231 -27.66714 -26.46076 -25.36870 -23.25067 -22.29861 -21.80078 -20.90434 -20.30043 -19.06244 -18.06259 -17.02884 -16.69010 -16.34465 -16.17492 -15.91190 -15.38421 -14.99247 -14.50221 -14.44164 -14.40621 -14.07147 -13.93047 -13.36157 -13.04070 -12.87951 -12.78760 -12.71343 -12.58555 -12.31886 -12.19542 -12.17607 -12.00729 -11.78942 -11.66420 -11.60133 -11.55734 -11.37531 -11.25303 -11.02129 -10.79682 -10.67891 -10.62672 -10.39517 -10.25477 -9.96841 -9.06647 -8.98842 -8.75087 -8.15801 -8.08423 -6.05878 -4.06887 1.80717 2.64293 3.35463 3.37860 3.41949 3.56615 3.76423 4.15551 4.25187 4.38352 4.41082 4.45232 4.51968 4.59560 4.74837 4.83586 5.07552 5.15025 5.20031 5.22761 5.27179 5.30417 5.30724 5.37149 5.44893 5.47648 5.49746 5.55309 5.58147 5.63457 5.65098 5.68772 5.81012 5.84643 5.98252 5.98409 6.01107 6.05110 6.11421 6.25601 6.29422 6.83032 7.06753 7.17606 7.29334 7.49447 7.85349 8.12980 8.22242 8.67098 9.07456 9.57656 11.05797 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.024696 B = 0.002345 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.525620 B =11936.886907 C =12361.207210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.182 4.182 5 O -0.362 6.362 6 C 0.670 3.330 7 O -0.570 6.570 8 N -0.607 5.607 9 C 0.064 3.936 10 C 0.059 3.941 11 H 0.140 0.860 12 C -0.133 4.133 13 C 0.130 3.870 14 H 0.129 0.871 15 C 0.026 3.974 16 N -0.496 5.496 17 C 0.050 3.950 18 C 0.071 3.929 19 O -0.380 6.380 20 C 0.195 3.805 21 C -0.510 4.510 22 H 0.066 0.934 23 C 0.054 3.946 24 N -0.901 5.901 25 Si 0.908 3.092 26 H -0.287 1.287 27 H -0.275 1.275 28 H -0.275 1.275 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.061 0.939 44 H 0.045 0.955 45 H 0.082 0.918 46 H 0.034 0.966 47 H 0.038 0.962 48 H 0.003 0.997 49 H 0.001 0.999 50 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.141 9.685 -23.586 27.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.239 4.239 5 O -0.277 6.277 6 C 0.425 3.575 7 O -0.459 6.459 8 N -0.348 5.348 9 C -0.061 4.061 10 C -0.050 4.050 11 H 0.157 0.843 12 C -0.171 4.171 13 C 0.028 3.972 14 H 0.147 0.853 15 C -0.103 4.103 16 N -0.220 5.220 17 C -0.078 4.078 18 C -0.008 4.008 19 O -0.299 6.299 20 C 0.120 3.880 21 C -0.548 4.548 22 H 0.084 0.916 23 C -0.146 4.146 24 N -0.540 5.540 25 Si 0.735 3.265 26 H -0.213 1.213 27 H -0.200 1.200 28 H -0.201 1.201 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.123 0.877 41 H 0.102 0.898 42 H 0.114 0.886 43 H 0.080 0.920 44 H 0.062 0.938 45 H 0.101 0.899 46 H 0.052 0.948 47 H 0.056 0.944 48 H 0.020 0.980 49 H 0.019 0.981 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.894 9.186 -23.419 27.031 hybrid contribution -0.269 0.419 0.047 0.500 sum 9.624 9.605 -23.371 27.039 Atomic orbital electron populations 1.22516 0.93940 1.05115 1.02497 1.22070 0.94439 0.91510 0.82120 1.21854 1.02182 0.92541 1.03159 1.22505 1.01439 1.03510 0.96479 1.86322 1.71470 1.23589 1.46346 1.17516 0.78645 0.80339 0.80954 1.90895 1.41551 1.70585 1.42898 1.47945 1.53147 1.12823 1.20934 1.23892 0.95025 0.98784 0.88361 1.25332 0.94479 0.91924 0.93255 0.84295 1.23950 0.96337 0.99751 0.97068 1.24125 0.96676 0.79393 0.96988 0.85346 1.23824 0.94988 1.02863 0.88611 1.64916 1.00814 1.31265 1.24976 1.22410 0.99105 0.90189 0.96071 1.22177 0.94618 0.94132 0.89845 1.87927 1.37573 1.67584 1.36810 1.20158 0.86506 0.94473 0.86814 1.21019 0.96756 1.29538 1.07514 0.91570 1.24956 0.94785 0.96734 0.98159 1.69957 1.04791 1.45588 1.33674 0.86398 0.78446 0.80727 0.80899 1.21266 1.20013 1.20068 0.92150 0.91144 0.89373 0.91529 0.90126 0.91436 0.89413 0.91159 0.92281 0.91043 0.90106 0.87742 0.89839 0.88629 0.92020 0.93758 0.89920 0.94807 0.94438 0.97959 0.98109 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.76 8.37 37.16 0.31 -1.45 16 2 C 0.14 1.29 1.13 -90.62 -0.10 1.19 16 3 C -0.14 -0.97 8.85 37.15 0.33 -0.64 16 4 C -0.18 -1.64 8.37 37.16 0.31 -1.32 16 5 O -0.36 -4.32 9.56 -40.33 -0.39 -4.70 16 6 C 0.67 8.78 7.98 54.06 0.43 9.21 16 7 O -0.57 -8.41 12.22 -19.28 -0.24 -8.65 16 8 N -0.61 -7.09 2.95 -160.54 -0.47 -7.57 16 9 C 0.06 0.65 6.11 0.02 0.00 0.65 16 10 C 0.06 0.61 5.32 -60.63 -0.32 0.29 16 11 H 0.14 1.27 8.14 -51.92 -0.42 0.85 16 12 C -0.13 -1.22 6.83 -22.29 -0.15 -1.38 16 13 C 0.13 1.41 5.18 -62.56 -0.32 1.09 16 14 H 0.13 1.34 8.05 -51.93 -0.42 0.92 16 15 C 0.03 0.33 5.62 -1.45 -0.01 0.33 16 16 N -0.50 -6.90 5.17 -214.84 -1.11 -8.02 16 17 C 0.05 0.73 4.05 -3.82 -0.02 0.72 16 18 C 0.07 1.32 6.13 37.15 0.23 1.55 16 19 O -0.38 -9.21 10.27 -35.23 -0.36 -9.57 16 20 C 0.19 5.43 5.69 36.00 0.20 5.63 16 21 C -0.51 -15.18 9.43 -34.44 -0.32 -15.50 16 22 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 23 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 24 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 25 Si 0.91 22.04 29.54 -169.99 -5.02 17.02 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.09 1.06 5.88 -51.93 -0.31 0.76 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.09 1.00 5.88 -51.93 -0.31 0.69 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.87 5.56 -51.93 -0.29 0.59 16 40 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 43 H 0.06 0.85 7.29 -51.93 -0.38 0.47 16 44 H 0.04 0.58 6.03 -51.93 -0.31 0.27 16 45 H 0.08 1.17 8.03 -51.93 -0.42 0.75 16 46 H 0.03 0.64 7.54 -51.93 -0.39 0.24 16 47 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 49 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 50 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 391.40 15.07 5.90 5.90 Total: -1.00 -33.75 391.40 -9.19 -42.94 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -8.70 Total: -2.65 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 0.47 Total: 1.84 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: -0.85 Total: -42.13 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.98 Total: -22.92 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.75 -9.19 -42.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879218942.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.434 kcal (2) G-P(sol) polarization free energy of solvation -33.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds