Wall clock time and date at job start Tue Mar 31 2020 14:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47142 * 2 1 4 4 C 1.52998 * 109.47179 * 240.00116 * 2 1 3 5 5 O 1.45196 * 109.47018 * 119.99752 * 2 1 3 6 6 C 1.34642 * 117.00040 * 60.00184 * 5 2 1 7 7 O 1.21515 * 119.99519 * 359.97438 * 6 5 2 8 8 N 1.34777 * 120.00308 * 179.97438 * 6 5 2 9 9 C 1.47860 * 126.92277 * 0.02562 * 8 6 5 10 10 C 1.58962 * 104.76837 * 182.29024 * 9 8 6 11 11 H 1.09010 * 116.83783 * 159.46785 * 10 9 8 12 12 C 1.57081 * 99.53251 * 32.28150 * 10 9 8 13 13 C 1.49277 * 126.92757 * 179.97438 * 8 6 5 14 14 H 1.09005 * 116.12170 * 16.02204 * 13 8 6 15 15 C 1.56006 * 104.12811 * 246.91316 * 13 8 6 16 16 N 1.48284 * 105.06584 * 287.95277 * 15 13 8 17 17 C 1.46906 * 110.99758 * 122.54942 * 16 15 13 18 18 C 1.52991 * 109.47185 * 76.42874 * 17 16 15 19 19 O 1.42898 * 109.47580 * 65.00113 * 18 17 16 20 20 C 1.42894 * 114.00428 * 179.97438 * 19 18 17 21 21 C 1.50696 * 109.47228 * 179.97438 * 20 19 18 22 22 H 1.07999 * 120.00263 * 0.02562 * 21 20 19 23 23 C 1.37882 * 120.00291 * 180.02562 * 21 20 19 24 24 N 1.31513 * 119.99788 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00354 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47502 * 180.02562 * 25 23 21 27 27 H 1.48498 * 109.47066 * 300.00349 * 25 23 21 28 28 H 1.48496 * 109.47172 * 60.00002 * 25 23 21 29 29 H 1.09000 * 109.46885 * 300.00183 * 1 2 3 30 30 H 1.09000 * 109.47272 * 59.99978 * 1 2 3 31 31 H 1.09000 * 109.47461 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47572 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47756 * 299.99911 * 3 2 1 34 34 H 1.09000 * 109.47380 * 60.00120 * 3 2 1 35 35 H 1.09000 * 109.46818 * 300.00264 * 4 2 1 36 36 H 1.09000 * 109.47095 * 59.99798 * 4 2 1 37 37 H 1.08990 * 109.47249 * 180.02562 * 4 2 1 38 38 H 1.09003 * 110.31554 * 300.82114 * 9 8 6 39 39 H 1.08995 * 110.31322 * 62.90989 * 9 8 6 40 40 H 1.09002 * 112.35586 * 192.43634 * 12 10 9 41 41 H 1.09004 * 112.35802 * 65.02606 * 12 10 9 42 42 H 1.09006 * 110.32185 * 169.05899 * 15 13 8 43 43 H 1.08996 * 110.41119 * 46.89850 * 15 13 8 44 44 H 1.09003 * 109.47072 * 316.42847 * 17 16 15 45 45 H 1.08999 * 109.47128 * 196.43194 * 17 16 15 46 46 H 1.08998 * 109.47515 * 304.99476 * 18 17 16 47 47 H 1.09001 * 109.46954 * 185.00155 * 18 17 16 48 48 H 1.09001 * 109.46846 * 60.00408 * 20 19 18 49 49 H 1.09001 * 109.47661 * 300.00272 * 20 19 18 50 50 H 0.96994 * 120.00016 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9509 -2.5094 0.5040 8 7 2.0680 -2.6657 2.4167 9 6 2.9189 -2.1681 3.5188 10 6 3.1307 -3.4263 4.4670 11 1 3.9853 -3.3948 5.1429 12 6 3.1085 -4.5699 3.3904 13 6 1.7614 -4.0905 2.7396 14 1 1.3751 -4.6961 1.9197 15 6 0.8680 -4.0080 4.0159 16 7 1.7899 -3.6093 5.1067 17 6 1.3393 -2.3674 5.7492 18 6 0.1603 -2.6712 6.6756 19 8 0.5987 -3.5123 7.7445 20 6 -0.4315 -3.8572 8.6727 21 6 0.1395 -4.7416 9.7510 22 1 1.1846 -5.0128 9.7299 23 6 -0.6725 -5.2046 10.7647 24 7 -1.9453 -4.8748 10.7902 25 14 0.0354 -6.3003 12.1017 26 1 -1.0354 -6.6599 13.0656 27 1 0.5849 -7.5364 11.4893 28 1 1.1194 -5.5762 12.8128 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1299 -0.7216 -1.2490 38 1 3.8778 -1.8243 3.1310 39 1 2.4152 -1.3611 4.0509 40 1 3.0230 -5.5598 3.8388 41 1 3.9492 -4.5055 2.6996 42 1 0.4248 -4.9803 4.2313 43 1 0.0881 -3.2577 3.8861 44 1 1.0270 -1.6556 4.9850 45 1 2.1574 -1.9412 6.3299 46 1 -0.6232 -3.1781 6.1124 47 1 -0.2307 -1.7392 7.0836 48 1 -1.2275 -4.3886 8.1511 49 1 -0.8345 -2.9496 9.1222 50 1 -2.5166 -5.2008 11.5031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879218942.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:00 Heat of formation + Delta-G solvation = -106.173440 kcal Electronic energy + Delta-G solvation = -29063.137621 eV Core-core repulsion = 25091.108956 eV Total energy + Delta-G solvation = -3972.028665 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.36370 -41.18291 -38.57936 -37.88283 -35.64071 -35.04417 -34.58525 -32.45457 -30.82555 -29.76237 -28.40161 -28.32659 -28.19159 -26.27747 -24.50691 -24.23395 -23.01282 -21.75679 -21.22361 -19.99505 -19.00291 -18.56677 -17.96726 -17.63483 -17.38711 -17.20907 -16.61303 -16.30103 -16.13359 -15.88553 -15.33705 -15.25038 -14.79847 -14.73552 -14.16576 -14.08885 -13.86402 -13.55114 -13.46037 -13.37597 -13.28103 -13.06820 -12.93363 -12.89928 -12.85288 -12.75142 -12.58347 -12.48787 -12.46463 -12.32682 -12.26149 -12.12315 -12.06642 -11.69088 -11.43363 -11.25172 -11.17468 -10.83702 -10.18053 -9.94611 -9.18746 -8.29493 -6.41617 0.94768 1.41666 1.46969 1.55196 1.66875 2.37027 2.73982 2.78538 3.04186 3.19311 3.31660 3.40966 3.60323 3.71981 3.76744 3.89263 3.91477 4.13682 4.16163 4.25052 4.32305 4.43193 4.44493 4.53579 4.57182 4.58440 4.66883 4.69400 4.72786 4.79210 4.80616 4.82457 4.84469 4.89280 4.92878 4.92966 5.04445 5.09003 5.15904 5.20002 5.24277 5.30091 5.42441 5.57651 5.81155 5.97234 6.01121 6.36501 6.58301 6.86931 7.17854 7.30376 8.82820 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.024696 B = 0.002345 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.525620 B =11936.886907 C =12361.207210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.123 3.877 3 C -0.135 4.135 4 C -0.176 4.176 5 O -0.368 6.368 6 C 0.664 3.336 7 O -0.593 6.593 8 N -0.608 5.608 9 C 0.068 3.932 10 C 0.062 3.938 11 H 0.158 0.842 12 C -0.118 4.118 13 C 0.131 3.869 14 H 0.131 0.869 15 C 0.028 3.972 16 N -0.522 5.522 17 C 0.064 3.936 18 C 0.062 3.938 19 O -0.389 6.389 20 C 0.210 3.790 21 C -0.543 4.543 22 H 0.064 0.936 23 C 0.003 3.997 24 N -0.934 5.934 25 Si 0.985 3.015 26 H -0.277 1.277 27 H -0.265 1.265 28 H -0.264 1.264 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.086 0.914 43 H 0.045 0.955 44 H 0.061 0.939 45 H 0.091 0.909 46 H 0.027 0.973 47 H 0.043 0.957 48 H -0.022 1.022 49 H -0.018 1.018 50 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.265 10.030 -23.923 28.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.087 3.913 3 C -0.192 4.192 4 C -0.234 4.234 5 O -0.282 6.282 6 C 0.420 3.580 7 O -0.484 6.484 8 N -0.350 5.350 9 C -0.056 4.056 10 C -0.045 4.045 11 H 0.175 0.825 12 C -0.156 4.156 13 C 0.030 3.970 14 H 0.149 0.851 15 C -0.101 4.101 16 N -0.245 5.245 17 C -0.064 4.064 18 C -0.016 4.016 19 O -0.308 6.308 20 C 0.135 3.865 21 C -0.580 4.580 22 H 0.082 0.918 23 C -0.195 4.195 24 N -0.573 5.573 25 Si 0.807 3.193 26 H -0.202 1.202 27 H -0.189 1.189 28 H -0.188 1.188 29 H 0.075 0.925 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.122 0.878 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.110 0.890 37 H 0.082 0.918 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.104 0.896 43 H 0.064 0.936 44 H 0.079 0.921 45 H 0.109 0.891 46 H 0.045 0.955 47 H 0.061 0.939 48 H -0.004 1.004 49 H -0.001 1.001 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.037 9.552 -23.774 28.308 hybrid contribution -0.995 0.376 0.062 1.065 sum 11.042 9.928 -23.712 27.978 Atomic orbital electron populations 1.22473 0.94318 1.03475 1.03437 1.22437 0.94369 0.92830 0.81636 1.21875 1.02499 0.90554 1.04235 1.22443 1.01647 1.02090 0.97178 1.86329 1.71500 1.22920 1.47498 1.17703 0.78515 0.80731 0.81066 1.90886 1.42543 1.71146 1.43844 1.48045 1.53014 1.13034 1.20884 1.23910 0.95480 0.98365 0.87812 1.25502 0.93019 0.92536 0.93476 0.82511 1.23918 0.95753 0.99317 0.96642 1.24134 0.97318 0.79457 0.96137 0.85142 1.23730 0.94964 1.01758 0.89647 1.64840 1.02636 1.31018 1.26056 1.22236 0.97575 0.90957 0.95634 1.22504 0.96788 0.93257 0.89008 1.87880 1.36659 1.68721 1.37575 1.19771 0.86564 0.93130 0.87074 1.21348 0.96967 1.30860 1.08861 0.91798 1.26007 0.95025 0.97908 1.00572 1.70076 1.06214 1.46366 1.34666 0.85209 0.78046 0.78611 0.77401 1.20197 1.18947 1.18824 0.92531 0.88871 0.92202 0.91016 0.87808 0.91600 0.92091 0.88991 0.91808 0.89143 0.90716 0.87552 0.87790 0.89628 0.93628 0.92085 0.89069 0.95486 0.93907 1.00399 1.00068 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.37 8.37 71.98 0.60 -2.77 16 2 C 0.12 2.21 1.13 -10.80 -0.01 2.20 16 3 C -0.13 -1.56 8.85 71.98 0.64 -0.92 16 4 C -0.18 -2.97 8.37 71.98 0.60 -2.36 16 5 O -0.37 -8.47 9.56 -55.51 -0.53 -9.00 16 6 C 0.66 17.24 7.98 129.79 1.04 18.28 16 7 O -0.59 -17.87 12.22 19.79 0.24 -17.63 16 8 N -0.61 -13.70 2.95 -892.24 -2.63 -16.33 16 9 C 0.07 1.25 6.11 88.27 0.54 1.79 16 10 C 0.06 1.17 5.32 47.95 0.26 1.43 16 11 H 0.16 2.42 8.14 -2.38 -0.02 2.40 16 12 C -0.12 -1.95 6.83 33.47 0.23 -1.72 16 13 C 0.13 2.78 5.18 46.93 0.24 3.02 16 14 H 0.13 2.71 8.05 -2.38 -0.02 2.69 16 15 C 0.03 0.73 5.62 87.08 0.49 1.22 16 16 N -0.52 -14.22 5.17 -833.62 -4.31 -18.53 16 17 C 0.06 1.84 4.05 86.30 0.35 2.19 16 18 C 0.06 2.38 6.13 71.98 0.44 2.82 16 19 O -0.39 -19.33 10.27 -148.98 -1.53 -20.86 16 20 C 0.21 12.12 5.69 71.23 0.41 12.53 16 21 C -0.54 -32.83 9.43 25.60 0.24 -32.59 16 22 H 0.06 3.80 7.81 -2.91 -0.02 3.78 16 23 C 0.00 0.17 5.46 84.66 0.46 0.63 16 24 N -0.93 -57.19 13.29 21.45 0.28 -56.91 16 25 Si 0.98 44.80 29.54 68.60 2.03 46.83 16 26 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 27 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 28 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.48 5.88 -2.39 -0.01 1.47 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.06 1.38 5.88 -2.39 -0.01 1.37 16 36 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.07 1.49 5.56 -2.39 -0.01 1.48 16 40 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 43 H 0.05 1.31 7.29 -2.39 -0.02 1.30 16 44 H 0.06 1.57 6.03 -2.39 -0.01 1.55 16 45 H 0.09 2.47 8.03 -2.39 -0.02 2.45 16 46 H 0.03 1.06 7.54 -2.39 -0.02 1.04 16 47 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 48 H -0.02 -1.33 8.14 -2.39 -0.02 -1.35 16 49 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 50 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -74.12 391.40 0.98 -73.14 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.91 Total: 13.54 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 6.52 Total: 5.75 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -6.66 Total: -91.77 kcal Atomic # 8 Polarization: -45.67 SS G_CDS: -1.82 Total: -47.49 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -74.12 0.98 -73.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879218942.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.033 kcal (2) G-P(sol) polarization free energy of solvation -74.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds