Wall clock time and date at job start Tue Mar 31 2020 14:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46497 * 120.00322 * 2 1 4 4 C 1.53006 * 109.46992 * 269.99874 * 3 2 1 5 5 H 1.09001 * 112.73951 * 56.23780 * 4 3 2 6 6 C 1.53501 * 113.46356 * 187.05508 * 4 3 2 7 7 C 1.53501 * 83.34167 * 88.71423 * 6 4 3 8 8 N 1.47064 * 113.46892 * 285.49130 * 4 3 2 9 9 C 1.34771 * 136.05742 * 92.36817 * 8 4 3 10 10 O 1.21512 * 120.00180 * 0.02562 * 9 8 4 11 11 O 1.34638 * 120.00269 * 180.02562 * 9 8 4 12 12 C 1.45198 * 117.00139 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46959 * 60.00652 * 12 11 9 14 14 C 1.53007 * 109.47222 * 180.02562 * 12 11 9 15 15 C 1.52991 * 109.47339 * 300.00276 * 12 11 9 16 16 C 1.34780 * 120.00111 * 179.97438 * 2 1 3 17 17 O 1.21280 * 120.00423 * 179.97438 * 16 2 1 18 18 C 1.50701 * 119.99795 * 0.02562 * 16 2 1 19 19 C 1.52997 * 109.47212 * 179.97438 * 18 16 2 20 20 C 1.50697 * 109.47466 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99890 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00428 * 179.97438 * 20 19 18 23 23 N 1.31519 * 119.99563 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00432 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46838 * 89.99826 * 24 22 20 26 26 H 1.48497 * 109.47419 * 209.99978 * 24 22 20 27 27 H 1.48499 * 109.47011 * 330.00539 * 24 22 20 28 28 H 1.08995 * 109.47620 * 270.00337 * 1 2 3 29 29 H 1.09006 * 109.47028 * 30.00444 * 1 2 3 30 30 H 1.09002 * 109.47109 * 150.00022 * 1 2 3 31 31 H 1.09000 * 109.47018 * 29.99405 * 3 2 1 32 32 H 1.09000 * 109.47828 * 149.99700 * 3 2 1 33 33 H 1.09003 * 114.20027 * 202.29543 * 6 4 3 34 34 H 1.08993 * 114.21302 * 335.12741 * 6 4 3 35 35 H 1.08995 * 113.46862 * 271.28282 * 7 6 4 36 36 H 1.09003 * 113.52122 * 140.85395 * 7 6 4 37 37 H 1.08997 * 109.47440 * 59.99491 * 13 12 11 38 38 H 1.09002 * 109.47052 * 179.97438 * 13 12 11 39 39 H 1.09001 * 109.46668 * 299.99655 * 13 12 11 40 40 H 1.09000 * 109.46768 * 60.00140 * 14 12 11 41 41 H 1.09002 * 109.47264 * 180.02562 * 14 12 11 42 42 H 1.08997 * 109.46984 * 300.00391 * 14 12 11 43 43 H 1.09001 * 109.47215 * 59.99777 * 15 12 11 44 44 H 1.09002 * 109.47203 * 179.97438 * 15 12 11 45 45 H 1.09002 * 109.47483 * 299.99762 * 15 12 11 46 46 H 1.09002 * 109.47060 * 299.99722 * 18 16 2 47 47 H 1.09001 * 109.47380 * 59.99809 * 18 16 2 48 48 H 1.09002 * 109.47153 * 299.99998 * 19 18 16 49 49 H 1.08998 * 109.47533 * 59.99628 * 19 18 16 50 50 H 0.97002 * 119.99731 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4426 5 1 1.5356 1.7937 -2.0260 6 6 3.3630 2.9412 -1.5530 7 6 4.4817 1.8903 -1.5685 8 7 3.5060 0.9351 -2.1148 9 6 3.5556 -0.1658 -2.8906 10 8 2.5316 -0.7545 -3.1761 11 8 4.7396 -0.6134 -3.3494 12 6 4.7172 -1.8043 -4.1799 13 6 3.8667 -1.5421 -5.4244 14 6 6.1445 -2.1584 -4.6023 15 6 4.1170 -2.9674 -3.3877 16 6 2.1388 -1.1672 0.0005 17 8 3.3516 -1.1673 0.0001 18 6 1.3853 -2.4723 0.0005 19 6 2.3795 -3.6352 0.0005 20 6 1.6260 -4.9403 0.0012 21 1 0.5460 -4.9404 0.0011 22 6 2.3154 -6.1344 0.0007 23 7 3.6306 -6.1344 0.0003 24 14 1.3814 -7.7522 0.0022 25 1 1.1324 -8.1812 -1.3975 26 1 2.1847 -8.7869 0.7017 27 1 0.0846 -7.5744 0.7036 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6084 2.0283 0.5137 32 1 3.1499 1.1384 0.5139 33 1 3.2560 3.4938 -2.4865 34 1 3.3613 3.5792 -0.6693 35 1 4.8406 1.6236 -0.5744 36 1 5.2912 2.1268 -2.2591 37 1 4.2943 -0.7135 -5.9888 38 1 3.8503 -2.4359 -6.0481 39 1 2.8500 -1.2901 -5.1231 40 1 6.7501 -2.3452 -3.7155 41 1 6.1277 -3.0521 -5.2261 42 1 6.5725 -1.3298 -5.1665 43 1 3.1002 -2.7154 -3.0864 44 1 4.0998 -3.8612 -4.0113 45 1 4.7229 -3.1542 -2.5010 46 1 0.7583 -2.5299 0.8903 47 1 0.7589 -2.5303 -0.8897 48 1 3.0062 -3.5775 -0.8895 49 1 3.0062 -3.5776 0.8904 50 1 4.1155 -6.9745 -0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887291537.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:49 Heat of formation + Delta-G solvation = -78.663631 kcal Electronic energy + Delta-G solvation = -30835.286314 eV Core-core repulsion = 26864.450564 eV Total energy + Delta-G solvation = -3970.835751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.83943 -39.59409 -38.65198 -36.14153 -34.99848 -33.64347 -33.39283 -31.06777 -29.90748 -28.46367 -27.16435 -26.84467 -26.36493 -25.52908 -23.92441 -22.99830 -21.32601 -20.27576 -18.69332 -18.42856 -17.55553 -16.96127 -16.37362 -16.22879 -15.76396 -15.49228 -15.15635 -15.05908 -14.50204 -14.33810 -13.88626 -13.77409 -13.31723 -13.10318 -12.75359 -12.65545 -12.61957 -12.31674 -12.18377 -12.13588 -12.03081 -11.92168 -11.85615 -11.62525 -11.48857 -11.35619 -11.02317 -10.96216 -10.87823 -10.85468 -10.66953 -10.53744 -9.97815 -9.78934 -9.56989 -9.51515 -9.06243 -8.89920 -8.84581 -8.24961 -8.12153 -5.89332 -3.92264 2.23371 3.22754 3.34547 3.36888 3.42792 3.45641 3.47562 4.03971 4.21586 4.52674 4.73426 4.89491 5.00625 5.05561 5.07936 5.10138 5.27685 5.28901 5.37552 5.39394 5.45683 5.47168 5.55001 5.62314 5.68776 5.69948 5.84569 5.86930 5.87887 5.96243 6.03826 6.10003 6.15236 6.34001 6.37169 6.39858 6.41395 6.64133 6.82831 6.90134 7.01730 7.10190 7.82019 7.83940 7.97971 7.98928 8.16441 8.47938 8.75903 8.89029 9.15799 9.70192 11.21505 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.010964 B = 0.004998 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.201910 B = 5600.391487 C = 7387.830280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.627 5.627 3 C 0.108 3.892 4 C 0.141 3.859 5 H 0.086 0.914 6 C -0.148 4.148 7 C 0.107 3.893 8 N -0.623 5.623 9 C 0.692 3.308 10 O -0.560 6.560 11 O -0.363 6.363 12 C 0.137 3.863 13 C -0.179 4.179 14 C -0.138 4.138 15 C -0.175 4.175 16 C 0.520 3.480 17 O -0.529 6.529 18 C -0.126 4.126 19 C 0.040 3.960 20 C -0.522 4.522 21 H 0.053 0.947 22 C 0.060 3.940 23 N -0.889 5.889 24 Si 0.889 3.111 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.275 1.275 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.089 0.911 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.027 0.973 49 H 0.018 0.982 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.760 20.156 -5.513 20.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.363 5.363 3 C -0.016 4.016 4 C 0.036 3.964 5 H 0.104 0.896 6 C -0.187 4.187 7 C -0.017 4.017 8 N -0.365 5.365 9 C 0.449 3.551 10 O -0.449 6.449 11 O -0.277 6.277 12 C 0.100 3.900 13 C -0.236 4.236 14 C -0.195 4.195 15 C -0.232 4.232 16 C 0.311 3.689 17 O -0.403 6.403 18 C -0.166 4.166 19 C 0.003 3.997 20 C -0.560 4.560 21 H 0.071 0.929 22 C -0.142 4.142 23 N -0.528 5.528 24 Si 0.717 3.283 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.199 1.199 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.108 0.892 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.096 0.904 48 H 0.046 0.954 49 H 0.037 0.963 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.212 19.524 -5.800 20.369 hybrid contribution -0.591 -1.115 -0.006 1.262 sum -0.803 18.410 -5.806 19.320 Atomic orbital electron populations 1.21694 0.79844 1.03065 1.01214 1.47921 1.06655 1.05545 1.76185 1.21641 0.98883 0.86594 0.94529 1.22915 0.93084 0.86517 0.93839 0.89560 1.23408 0.96276 0.95295 1.03692 1.22924 0.93823 0.85287 0.99632 1.48023 1.11933 1.26335 1.50185 1.17137 0.82260 0.78171 0.77551 1.90892 1.34846 1.56672 1.62443 1.86244 1.31989 1.45065 1.64453 1.22102 0.96636 0.82274 0.88973 1.22495 1.02527 1.01877 0.96731 1.21828 0.94019 1.01578 1.02049 1.22439 1.04344 0.95940 1.00438 1.21443 0.88408 0.85355 0.73727 1.90634 1.14258 1.87136 1.48304 1.21843 1.00715 0.92226 1.01839 1.18885 0.93128 0.89262 0.98449 1.21217 0.92826 0.91087 1.50879 0.92856 1.24979 0.94779 0.98967 0.95451 1.70004 1.05941 1.26301 1.50572 0.86653 0.79841 0.83795 0.78037 1.20725 1.21290 1.19947 0.93030 0.91887 0.90609 0.89392 0.89305 0.88547 0.88801 0.89597 0.90562 0.92930 0.91324 0.89553 0.91356 0.90287 0.92184 0.89215 0.91728 0.91273 0.90876 0.90387 0.95446 0.96335 0.93145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.01 10.24 59.84 0.61 1.62 16 2 N -0.63 -9.68 2.87 -181.58 -0.52 -10.20 16 3 C 0.11 1.30 5.29 -4.04 -0.02 1.28 16 4 C 0.14 1.63 4.55 -72.39 -0.33 1.30 16 5 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 6 C -0.15 -1.13 8.08 -26.21 -0.21 -1.34 16 7 C 0.11 1.19 8.28 -8.50 -0.07 1.12 16 8 N -0.62 -9.57 3.13 -183.25 -0.57 -10.14 16 9 C 0.69 13.23 7.39 54.05 0.40 13.63 16 10 O -0.56 -11.88 12.66 -19.28 -0.24 -12.13 16 11 O -0.36 -6.82 9.91 -40.32 -0.40 -7.22 16 12 C 0.14 2.35 1.13 -90.62 -0.10 2.25 16 13 C -0.18 -2.73 8.37 37.16 0.31 -2.42 16 14 C -0.14 -1.91 8.85 37.16 0.33 -1.58 16 15 C -0.17 -3.60 7.95 37.15 0.30 -3.31 16 16 C 0.52 10.79 7.54 -10.98 -0.08 10.71 16 17 O -0.53 -12.68 14.45 5.56 0.08 -12.60 16 18 C -0.13 -2.83 4.19 -27.88 -0.12 -2.95 16 19 C 0.04 1.13 4.26 -27.89 -0.12 1.01 16 20 C -0.52 -15.29 9.11 -34.44 -0.31 -15.61 16 21 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 22 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 23 N -0.89 -27.70 13.29 55.43 0.74 -26.97 16 24 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 25 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.57 8.07 -51.93 -0.42 0.16 16 30 H 0.08 0.99 6.44 -51.93 -0.33 0.66 16 31 H 0.09 0.71 8.07 -51.93 -0.42 0.29 16 32 H 0.09 1.21 6.28 -51.93 -0.33 0.88 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.46 8.11 -51.93 -0.42 0.04 16 35 H 0.09 0.99 7.28 -51.93 -0.38 0.61 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.09 1.51 5.88 -51.93 -0.31 1.21 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.09 2.12 5.75 -51.93 -0.30 1.82 16 44 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.07 1.61 8.11 -51.93 -0.42 1.19 16 46 H 0.07 1.51 8.11 -51.93 -0.42 1.09 16 47 H 0.08 1.72 7.40 -51.93 -0.38 1.33 16 48 H 0.03 0.84 7.52 -51.93 -0.39 0.45 16 49 H 0.02 0.56 8.10 -51.93 -0.42 0.14 16 50 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 400.46 15.07 6.03 6.03 Total: -1.00 -37.54 400.46 -8.13 -45.67 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -8.71 Total: 2.98 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 0.48 Total: 7.39 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -0.36 Total: -47.32 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -0.56 Total: -31.94 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -37.54 -8.13 -45.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887291537.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.993 kcal (2) G-P(sol) polarization free energy of solvation -37.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds