Wall clock time and date at job start Tue Mar 31 2020 14:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46497 * 120.00322 * 2 1 4 4 C 1.53006 * 109.46992 * 269.99874 * 3 2 1 5 5 H 1.09001 * 112.73951 * 56.23780 * 4 3 2 6 6 C 1.53501 * 113.46356 * 187.05508 * 4 3 2 7 7 C 1.53501 * 83.34167 * 88.71423 * 6 4 3 8 8 N 1.47064 * 113.46892 * 285.49130 * 4 3 2 9 9 C 1.34771 * 136.05742 * 92.36817 * 8 4 3 10 10 O 1.21512 * 120.00180 * 0.02562 * 9 8 4 11 11 O 1.34638 * 120.00269 * 180.02562 * 9 8 4 12 12 C 1.45198 * 117.00139 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46959 * 60.00652 * 12 11 9 14 14 C 1.53007 * 109.47222 * 180.02562 * 12 11 9 15 15 C 1.52991 * 109.47339 * 300.00276 * 12 11 9 16 16 C 1.34780 * 120.00111 * 179.97438 * 2 1 3 17 17 O 1.21280 * 120.00423 * 179.97438 * 16 2 1 18 18 C 1.50701 * 119.99795 * 0.02562 * 16 2 1 19 19 C 1.52997 * 109.47212 * 179.97438 * 18 16 2 20 20 C 1.50697 * 109.47466 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99890 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00428 * 179.97438 * 20 19 18 23 23 N 1.31519 * 119.99563 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00432 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46838 * 89.99826 * 24 22 20 26 26 H 1.48497 * 109.47419 * 209.99978 * 24 22 20 27 27 H 1.48499 * 109.47011 * 330.00539 * 24 22 20 28 28 H 1.08995 * 109.47620 * 270.00337 * 1 2 3 29 29 H 1.09006 * 109.47028 * 30.00444 * 1 2 3 30 30 H 1.09002 * 109.47109 * 150.00022 * 1 2 3 31 31 H 1.09000 * 109.47018 * 29.99405 * 3 2 1 32 32 H 1.09000 * 109.47828 * 149.99700 * 3 2 1 33 33 H 1.09003 * 114.20027 * 202.29543 * 6 4 3 34 34 H 1.08993 * 114.21302 * 335.12741 * 6 4 3 35 35 H 1.08995 * 113.46862 * 271.28282 * 7 6 4 36 36 H 1.09003 * 113.52122 * 140.85395 * 7 6 4 37 37 H 1.08997 * 109.47440 * 59.99491 * 13 12 11 38 38 H 1.09002 * 109.47052 * 179.97438 * 13 12 11 39 39 H 1.09001 * 109.46668 * 299.99655 * 13 12 11 40 40 H 1.09000 * 109.46768 * 60.00140 * 14 12 11 41 41 H 1.09002 * 109.47264 * 180.02562 * 14 12 11 42 42 H 1.08997 * 109.46984 * 300.00391 * 14 12 11 43 43 H 1.09001 * 109.47215 * 59.99777 * 15 12 11 44 44 H 1.09002 * 109.47203 * 179.97438 * 15 12 11 45 45 H 1.09002 * 109.47483 * 299.99762 * 15 12 11 46 46 H 1.09002 * 109.47060 * 299.99722 * 18 16 2 47 47 H 1.09001 * 109.47380 * 59.99809 * 18 16 2 48 48 H 1.09002 * 109.47153 * 299.99998 * 19 18 16 49 49 H 1.08998 * 109.47533 * 59.99628 * 19 18 16 50 50 H 0.97002 * 119.99731 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4426 5 1 1.5356 1.7937 -2.0260 6 6 3.3630 2.9412 -1.5530 7 6 4.4817 1.8903 -1.5685 8 7 3.5060 0.9351 -2.1148 9 6 3.5556 -0.1658 -2.8906 10 8 2.5316 -0.7545 -3.1761 11 8 4.7396 -0.6134 -3.3494 12 6 4.7172 -1.8043 -4.1799 13 6 3.8667 -1.5421 -5.4244 14 6 6.1445 -2.1584 -4.6023 15 6 4.1170 -2.9674 -3.3877 16 6 2.1388 -1.1672 0.0005 17 8 3.3516 -1.1673 0.0001 18 6 1.3853 -2.4723 0.0005 19 6 2.3795 -3.6352 0.0005 20 6 1.6260 -4.9403 0.0012 21 1 0.5460 -4.9404 0.0011 22 6 2.3154 -6.1344 0.0007 23 7 3.6306 -6.1344 0.0003 24 14 1.3814 -7.7522 0.0022 25 1 1.1324 -8.1812 -1.3975 26 1 2.1847 -8.7869 0.7017 27 1 0.0846 -7.5744 0.7036 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6084 2.0283 0.5137 32 1 3.1499 1.1384 0.5139 33 1 3.2560 3.4938 -2.4865 34 1 3.3613 3.5792 -0.6693 35 1 4.8406 1.6236 -0.5744 36 1 5.2912 2.1268 -2.2591 37 1 4.2943 -0.7135 -5.9888 38 1 3.8503 -2.4359 -6.0481 39 1 2.8500 -1.2901 -5.1231 40 1 6.7501 -2.3452 -3.7155 41 1 6.1277 -3.0521 -5.2261 42 1 6.5725 -1.3298 -5.1665 43 1 3.1002 -2.7154 -3.0864 44 1 4.0998 -3.8612 -4.0113 45 1 4.7229 -3.1542 -2.5010 46 1 0.7583 -2.5299 0.8903 47 1 0.7589 -2.5303 -0.8897 48 1 3.0062 -3.5775 -0.8895 49 1 3.0062 -3.5776 0.8904 50 1 4.1155 -6.9745 -0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887291537.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:48 Heat of formation + Delta-G solvation = -104.465563 kcal Electronic energy + Delta-G solvation = -30836.405170 eV Core-core repulsion = 26864.450564 eV Total energy + Delta-G solvation = -3971.954606 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.02357 -40.95744 -40.02133 -37.54499 -36.37258 -35.60250 -35.02647 -33.09104 -31.08367 -29.58588 -28.41406 -28.35687 -27.87493 -27.07090 -25.20716 -24.12439 -23.25144 -21.49967 -20.15867 -19.76764 -18.85317 -18.66035 -17.86032 -17.61875 -17.21093 -17.00976 -16.62221 -16.48271 -16.30637 -15.71364 -15.20629 -15.07798 -14.82314 -14.59883 -14.25895 -13.97562 -13.67826 -13.62045 -13.54325 -13.39919 -13.33746 -13.15297 -13.14142 -12.95282 -12.90673 -12.89280 -12.82470 -12.58201 -12.48154 -12.30257 -12.12017 -11.94839 -11.62278 -11.55649 -11.38403 -11.30135 -10.99571 -10.60656 -10.58000 -10.08926 -9.32198 -8.19431 -6.33345 1.05229 1.36757 1.40048 1.50772 1.72788 2.00104 2.12771 2.40302 2.90640 3.12551 3.38172 3.71974 3.75671 3.81281 3.89326 3.90422 4.13430 4.17512 4.25343 4.34021 4.41633 4.46588 4.47517 4.53469 4.54626 4.59081 4.61948 4.70208 4.74401 4.77417 4.83810 4.87926 4.94065 4.98023 4.99768 5.05697 5.08123 5.24973 5.28270 5.31568 5.45098 5.57179 5.62246 5.70224 5.83539 6.16569 6.40538 6.76737 6.82779 7.33252 7.36575 7.38607 8.92859 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.010964 B = 0.004998 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.201910 B = 5600.391487 C = 7387.830280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.619 5.619 3 C 0.104 3.896 4 C 0.129 3.871 5 H 0.089 0.911 6 C -0.106 4.106 7 C 0.094 3.906 8 N -0.635 5.635 9 C 0.675 3.325 10 O -0.594 6.594 11 O -0.375 6.375 12 C 0.131 3.869 13 C -0.168 4.168 14 C -0.132 4.132 15 C -0.161 4.161 16 C 0.516 3.484 17 O -0.574 6.574 18 C -0.116 4.116 19 C 0.054 3.946 20 C -0.544 4.544 21 H 0.067 0.933 22 C 0.000 4.000 23 N -0.932 5.932 24 Si 0.970 3.030 25 H -0.272 1.272 26 H -0.281 1.281 27 H -0.257 1.257 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.057 0.943 31 H 0.143 0.857 32 H 0.070 0.930 33 H 0.114 0.886 34 H 0.135 0.865 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.054 0.946 44 H 0.075 0.925 45 H 0.025 0.975 46 H 0.093 0.907 47 H 0.079 0.921 48 H -0.015 1.015 49 H -0.024 1.024 50 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.507 22.483 -5.936 23.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.352 5.352 3 C -0.019 4.019 4 C 0.026 3.974 5 H 0.107 0.893 6 C -0.144 4.144 7 C -0.029 4.029 8 N -0.377 5.377 9 C 0.432 3.568 10 O -0.485 6.485 11 O -0.290 6.290 12 C 0.094 3.906 13 C -0.225 4.225 14 C -0.189 4.189 15 C -0.218 4.218 16 C 0.306 3.694 17 O -0.453 6.453 18 C -0.156 4.156 19 C 0.017 3.983 20 C -0.582 4.582 21 H 0.085 0.915 22 C -0.198 4.198 23 N -0.571 5.571 24 Si 0.793 3.207 25 H -0.198 1.198 26 H -0.207 1.207 27 H -0.181 1.181 28 H 0.093 0.907 29 H 0.119 0.881 30 H 0.076 0.924 31 H 0.160 0.840 32 H 0.089 0.911 33 H 0.133 0.867 34 H 0.153 0.847 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.118 0.882 42 H 0.104 0.896 43 H 0.073 0.927 44 H 0.094 0.906 45 H 0.044 0.956 46 H 0.111 0.889 47 H 0.097 0.903 48 H 0.003 0.997 49 H -0.006 1.006 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.003 21.941 -6.200 22.888 hybrid contribution -0.050 -1.770 0.175 1.779 sum -2.054 20.171 -6.025 21.151 Atomic orbital electron populations 1.21986 0.77312 1.04124 1.03062 1.47874 1.08323 1.05152 1.73837 1.22007 0.98741 0.85820 0.95375 1.23283 0.93441 0.87761 0.92943 0.89301 1.23362 0.91203 0.93403 1.06427 1.23224 0.94995 0.85567 0.99066 1.48533 1.14928 1.25150 1.49099 1.17602 0.81833 0.79015 0.78356 1.90848 1.35649 1.58039 1.63982 1.86236 1.32444 1.45324 1.64969 1.22298 0.98838 0.80505 0.88919 1.22377 1.00595 1.03606 0.95898 1.21845 0.91480 1.03519 1.02007 1.22266 1.01649 0.98420 0.99460 1.21017 0.87716 0.86518 0.74154 1.90613 1.15966 1.87925 1.50839 1.21567 0.99424 0.91904 1.02712 1.18578 0.93319 0.92083 0.94352 1.21626 0.93556 0.91830 1.51160 0.91531 1.26053 0.95716 1.03551 0.94478 1.70185 1.08111 1.27628 1.51217 0.85389 0.78774 0.77976 0.78544 1.19781 1.20669 1.18087 0.90656 0.88132 0.92374 0.83950 0.91140 0.86749 0.84708 0.90458 0.89894 0.90622 0.89422 0.92173 0.92842 0.88183 0.89573 0.92746 0.90627 0.95589 0.88906 0.90308 0.99667 1.00556 0.92902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.64 10.24 127.77 1.31 2.95 16 2 N -0.62 -18.59 2.87 -846.77 -2.43 -21.02 16 3 C 0.10 2.24 5.29 86.38 0.46 2.70 16 4 C 0.13 2.69 4.55 41.80 0.19 2.88 16 5 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 6 C -0.11 -1.19 8.08 30.93 0.25 -0.94 16 7 C 0.09 1.98 8.28 83.18 0.69 2.67 16 8 N -0.64 -19.60 3.13 -964.10 -3.02 -22.62 16 9 C 0.68 27.11 7.39 129.79 0.96 28.06 16 10 O -0.59 -26.79 12.66 19.80 0.25 -26.54 16 11 O -0.37 -14.86 9.91 -55.47 -0.55 -15.41 16 12 C 0.13 4.71 1.13 -10.79 -0.01 4.70 16 13 C -0.17 -5.13 8.37 71.98 0.60 -4.53 16 14 C -0.13 -3.66 8.85 71.98 0.64 -3.03 16 15 C -0.16 -7.30 7.95 71.98 0.57 -6.72 16 16 C 0.52 22.43 7.54 87.66 0.66 23.09 16 17 O -0.57 -29.66 14.45 -3.03 -0.04 -29.70 16 18 C -0.12 -5.49 4.19 29.85 0.13 -5.36 16 19 C 0.05 3.29 4.26 29.85 0.13 3.42 16 20 C -0.54 -33.22 9.11 25.60 0.23 -32.98 16 21 H 0.07 3.79 7.74 -2.91 -0.02 3.77 16 22 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 23 N -0.93 -60.97 13.29 21.45 0.28 -60.68 16 24 Si 0.97 46.37 29.54 68.60 2.03 48.39 16 25 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 26 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 27 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 28 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.10 1.43 8.07 -2.38 -0.02 1.41 16 30 H 0.06 1.47 6.44 -2.39 -0.02 1.45 16 31 H 0.14 1.56 8.07 -2.39 -0.02 1.54 16 32 H 0.07 1.85 6.28 -2.39 -0.02 1.83 16 33 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.13 0.52 8.11 -2.39 -0.02 0.50 16 35 H 0.08 1.77 7.28 -2.39 -0.02 1.75 16 36 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.06 2.19 5.88 -2.39 -0.01 2.17 16 40 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.05 2.85 5.75 -2.39 -0.01 2.83 16 44 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 45 H 0.02 1.34 8.11 -2.39 -0.02 1.32 16 46 H 0.09 3.92 8.11 -2.39 -0.02 3.90 16 47 H 0.08 3.66 7.40 -2.39 -0.02 3.64 16 48 H -0.02 -1.03 7.52 -2.39 -0.02 -1.05 16 49 H -0.02 -1.63 8.10 -2.39 -0.02 -1.64 16 50 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 Total: -1.00 -92.51 400.46 4.68 -87.82 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 0.91 Total: 22.40 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 7.26 Total: 17.37 kcal Atomic # 7 Polarization: -99.16 SS G_CDS: -5.17 Total: -104.33 kcal Atomic # 8 Polarization: -71.31 SS G_CDS: -0.34 Total: -71.66 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.39 kcal Total: -92.51 4.68 -87.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887291537.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.642 kcal (2) G-P(sol) polarization free energy of solvation -92.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds