Wall clock time and date at job start Tue Mar 31 2020 14:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52994 * 109.47133 * 239.99713 * 2 1 3 5 5 O 1.45204 * 109.47006 * 120.00331 * 2 1 3 6 6 C 1.34629 * 117.00425 * 59.99579 * 5 2 1 7 7 O 1.21517 * 119.99805 * 0.02562 * 6 5 2 8 8 N 1.34777 * 120.00511 * 180.02562 * 6 5 2 9 9 C 1.46495 * 120.00160 * 180.02562 * 8 6 5 10 10 H 1.09001 * 110.67496 * 36.77996 * 9 8 6 11 11 C 1.54893 * 110.75832 * 273.54686 * 9 8 6 12 12 C 1.54270 * 104.19545 * 203.74634 * 11 9 8 13 13 C 1.53869 * 106.59684 * 23.60595 * 12 11 9 14 14 H 1.09003 * 110.03349 * 240.66270 * 13 12 11 15 15 C 1.53005 * 110.02932 * 119.29102 * 13 12 11 16 16 C 1.50696 * 109.47353 * 66.44808 * 15 13 12 17 17 O 1.21284 * 120.00096 * 0.02562 * 16 15 13 18 18 N 1.34774 * 119.99838 * 180.02562 * 16 15 13 19 19 C 1.46506 * 120.00072 * 180.02562 * 18 16 15 20 20 C 1.50703 * 109.47289 * 179.97438 * 19 18 16 21 21 H 1.07994 * 119.99399 * 0.02562 * 20 19 18 22 22 C 1.37874 * 119.99789 * 179.97438 * 20 19 18 23 23 N 1.31518 * 120.00144 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99733 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46762 * 60.00562 * 24 22 20 26 26 H 1.48506 * 109.46725 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47116 * 300.00217 * 24 22 20 28 28 C 1.54261 * 106.60229 * 0.02562 * 13 12 11 29 29 H 1.09004 * 109.46708 * 300.00279 * 1 2 3 30 30 H 1.09003 * 109.46864 * 59.99757 * 1 2 3 31 31 H 1.08993 * 109.47579 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47043 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47011 * 299.99713 * 3 2 1 34 34 H 1.09004 * 109.46976 * 60.00189 * 3 2 1 35 35 H 1.08998 * 109.47826 * 300.00270 * 4 2 1 36 36 H 1.09003 * 109.46813 * 60.00498 * 4 2 1 37 37 H 1.08998 * 109.47546 * 179.97438 * 4 2 1 38 38 H 0.97003 * 119.99700 * 0.02562 * 8 6 5 39 39 H 1.08999 * 110.48414 * 85.06281 * 11 9 8 40 40 H 1.08998 * 110.48302 * 322.42222 * 11 9 8 41 41 H 1.09003 * 110.02436 * 264.32379 * 12 11 9 42 42 H 1.08995 * 110.02993 * 142.89394 * 12 11 9 43 43 H 1.09004 * 109.46832 * 306.44941 * 15 13 12 44 44 H 1.09001 * 109.47420 * 186.45379 * 15 13 12 45 45 H 0.97001 * 120.00676 * 359.97438 * 18 16 15 46 46 H 1.09001 * 109.47060 * 300.00359 * 19 18 16 47 47 H 1.09004 * 109.47073 * 59.99848 * 19 18 16 48 48 H 0.96997 * 119.99752 * 179.97438 * 23 22 20 49 49 H 1.08996 * 110.48951 * 95.06614 * 28 13 12 50 50 H 1.09007 * 110.48350 * 217.71103 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6846 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9515 -2.5097 0.5036 8 7 2.0671 -2.6655 2.4172 9 6 1.6739 -4.0669 2.5831 10 1 1.6524 -4.5772 1.6201 11 6 0.2998 -4.1715 3.2904 12 6 0.3079 -5.5767 3.9269 13 6 1.7848 -5.9699 4.1052 14 1 2.0026 -6.8723 3.5340 15 6 2.0903 -6.2014 5.5865 16 6 1.3333 -7.4104 6.0725 17 8 0.6201 -8.0266 5.3093 18 7 1.4489 -7.8069 7.3554 19 6 0.7134 -8.9826 7.8279 20 6 1.0143 -9.2106 9.2869 21 1 1.6858 -8.5459 9.8099 22 6 0.4314 -10.2670 9.9541 23 7 -0.3867 -11.0761 9.3171 24 14 0.8049 -10.5499 11.7624 25 1 0.3904 -9.3584 12.5457 26 1 0.0592 -11.7416 12.2412 27 1 2.2622 -10.7751 11.9375 28 6 2.6227 -4.7897 3.5715 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1299 -0.7209 -1.2495 38 1 2.6261 -2.2364 3.0837 39 1 -0.5098 -4.0855 2.5656 40 1 0.2075 -3.4048 4.0596 41 1 -0.1909 -6.2877 3.2682 42 1 -0.1912 -5.5507 4.8955 43 1 1.7857 -5.3268 6.1613 44 1 3.1600 -6.3664 5.7154 45 1 2.0196 -7.3144 7.9659 46 1 -0.3563 -8.8182 7.6984 47 1 1.0187 -9.8572 7.2534 48 1 -0.7965 -11.8195 9.7864 49 1 2.9053 -4.1232 4.3863 50 1 3.5083 -5.1550 3.0515 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907804374.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:21 Heat of formation + Delta-G solvation = -149.180048 kcal Electronic energy + Delta-G solvation = -27661.815700 eV Core-core repulsion = 23687.922128 eV Total energy + Delta-G solvation = -3973.893572 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.03951 -39.52495 -38.29555 -36.91907 -34.70815 -34.19698 -33.74424 -32.33234 -30.70141 -28.55712 -27.76723 -27.70458 -27.40874 -25.33060 -22.93272 -22.43714 -20.85636 -20.49167 -19.92005 -19.23982 -18.37200 -17.14087 -16.87214 -16.38640 -16.03173 -15.82119 -15.46082 -15.10062 -14.85906 -14.68204 -14.45143 -14.16896 -13.85065 -13.52655 -13.08079 -12.92305 -12.84495 -12.62954 -12.43527 -12.24233 -12.23690 -12.14826 -11.99247 -11.83774 -11.63718 -11.55735 -11.48504 -11.15265 -11.04841 -10.91873 -10.86674 -10.66330 -10.59089 -10.35618 -10.29359 -10.26471 -9.41173 -9.33804 -8.96846 -8.72946 -7.86135 -6.16764 -4.23892 1.92309 2.62975 3.24605 3.29523 3.30951 3.41750 3.83805 4.10273 4.34773 4.36620 4.40803 4.43091 4.55277 4.55395 4.83732 5.10708 5.12995 5.18463 5.19060 5.24033 5.26918 5.33323 5.33949 5.38119 5.43614 5.51588 5.51953 5.56165 5.62841 5.64185 5.72112 5.82216 5.89602 5.96002 6.00440 6.07895 6.14522 6.27411 6.29556 6.46947 6.50605 7.20434 7.31562 7.45832 7.52413 7.66753 7.97544 8.17473 8.64775 8.78524 9.13198 9.43020 10.93335 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.040045 B = 0.001702 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.051840 B =16447.462547 C =16593.176257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.367 6.367 6 C 0.649 3.351 7 O -0.567 6.567 8 N -0.703 5.703 9 C 0.156 3.844 10 H 0.099 0.901 11 C -0.137 4.137 12 C -0.107 4.107 13 C -0.070 4.070 14 H 0.085 0.915 15 C -0.136 4.136 16 C 0.495 3.505 17 O -0.554 6.554 18 N -0.716 5.716 19 C 0.250 3.750 20 C -0.545 4.545 21 H 0.062 0.938 22 C 0.064 3.936 23 N -0.885 5.885 24 Si 0.904 3.096 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.275 1.275 28 C -0.125 4.125 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.404 0.596 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.390 0.610 46 H 0.026 0.974 47 H 0.026 0.974 48 H 0.266 0.734 49 H 0.075 0.925 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.555 24.531 -16.980 30.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.282 6.282 6 C 0.402 3.598 7 O -0.456 6.456 8 N -0.361 5.361 9 C 0.053 3.947 10 H 0.117 0.883 11 C -0.176 4.176 12 C -0.145 4.145 13 C -0.089 4.089 14 H 0.103 0.897 15 C -0.176 4.176 16 C 0.280 3.720 17 O -0.433 6.433 18 N -0.364 5.364 19 C 0.129 3.871 20 C -0.583 4.583 21 H 0.080 0.920 22 C -0.140 4.140 23 N -0.523 5.523 24 Si 0.731 3.269 25 H -0.201 1.201 26 H -0.211 1.211 27 H -0.201 1.201 28 C -0.163 4.163 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.239 0.761 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.222 0.778 46 H 0.044 0.956 47 H 0.044 0.956 48 H 0.076 0.924 49 H 0.094 0.906 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.549 23.688 -17.959 30.439 hybrid contribution 0.636 0.213 1.664 1.794 sum 7.185 23.901 -16.295 29.806 Atomic orbital electron populations 1.22518 0.93946 1.05187 1.02454 1.22054 0.94408 0.91456 0.82105 1.21863 1.02213 0.92591 1.03128 1.22517 1.01496 1.03604 0.96460 1.86294 1.71649 1.23801 1.46493 1.18130 0.78876 0.80448 0.82336 1.90909 1.40943 1.70308 1.43410 1.44830 1.55345 1.12587 1.23351 1.22063 0.94601 0.78071 0.99945 0.88324 1.22835 0.96915 0.98216 0.99657 1.22051 0.96011 0.94834 1.01575 1.21404 0.95003 0.97762 0.94777 0.89690 1.21823 1.01206 0.97784 0.96792 1.20502 0.82767 0.85863 0.82881 1.90660 1.40555 1.56964 1.55118 1.46495 1.47936 1.32008 1.09938 1.19079 0.91917 0.82121 0.94014 1.21202 1.29104 1.13294 0.94694 0.91991 1.24954 0.94710 0.95509 0.98841 1.69967 1.29353 1.16152 1.36791 0.86476 0.78474 0.77768 0.84191 1.20089 1.21062 1.20085 1.22713 0.97973 0.97381 0.98253 0.92177 0.91182 0.89275 0.91499 0.90152 0.91472 0.89297 0.91178 0.92224 0.76070 0.91177 0.91461 0.90981 0.91295 0.89441 0.89475 0.77815 0.95625 0.95629 0.92402 0.90600 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.53 8.37 37.16 0.31 -1.22 16 2 C 0.14 1.12 1.13 -90.62 -0.10 1.02 16 3 C -0.14 -0.79 8.85 37.16 0.33 -0.46 16 4 C -0.18 -1.48 8.37 37.15 0.31 -1.17 16 5 O -0.37 -3.64 9.94 -40.29 -0.40 -4.04 16 6 C 0.65 7.17 8.05 54.06 0.44 7.60 16 7 O -0.57 -7.58 11.61 -19.29 -0.22 -7.81 16 8 N -0.70 -6.29 5.21 -56.77 -0.30 -6.59 16 9 C 0.16 1.52 3.18 -65.93 -0.21 1.31 16 10 H 0.10 1.09 7.70 -51.93 -0.40 0.69 16 11 C -0.14 -1.49 6.51 -25.07 -0.16 -1.66 16 12 C -0.11 -1.37 5.34 -25.61 -0.14 -1.51 16 13 C -0.07 -0.83 2.56 -89.50 -0.23 -1.05 16 14 H 0.08 1.13 7.97 -51.93 -0.41 0.72 16 15 C -0.14 -1.70 4.85 -27.88 -0.14 -1.84 16 16 C 0.49 9.33 7.35 -10.99 -0.08 9.25 16 17 O -0.55 -12.66 15.07 5.55 0.08 -12.58 16 18 N -0.72 -14.67 5.55 -61.47 -0.34 -15.01 16 19 C 0.25 6.57 5.43 -5.19 -0.03 6.55 16 20 C -0.54 -14.72 9.28 -34.44 -0.32 -15.04 16 21 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 22 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 23 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 24 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 28 C -0.13 -1.06 5.96 -25.06 -0.15 -1.21 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.96 5.88 -51.93 -0.31 0.66 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.09 0.93 5.88 -51.93 -0.31 0.63 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.40 2.70 8.63 -40.82 -0.35 2.35 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.07 0.99 7.32 -51.93 -0.38 0.61 16 43 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.39 6.79 8.32 -40.82 -0.34 6.45 16 46 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 49 H 0.08 0.53 7.73 -51.93 -0.40 0.13 16 50 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 399.69 15.07 6.02 6.02 Total: -1.00 -33.13 399.69 -8.48 -41.61 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -8.77 Total: 5.74 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -0.27 Total: 2.24 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 0.10 Total: -46.92 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.54 Total: -24.42 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.13 -8.48 -41.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907804374.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.575 kcal (2) G-P(sol) polarization free energy of solvation -33.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds