Wall clock time and date at job start Tue Mar 31 2020 14:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52994 * 109.47133 * 239.99713 * 2 1 3 5 5 O 1.45204 * 109.47006 * 120.00331 * 2 1 3 6 6 C 1.34629 * 117.00425 * 59.99579 * 5 2 1 7 7 O 1.21517 * 119.99805 * 0.02562 * 6 5 2 8 8 N 1.34777 * 120.00511 * 180.02562 * 6 5 2 9 9 C 1.46495 * 120.00160 * 180.02562 * 8 6 5 10 10 H 1.09001 * 110.67496 * 36.77996 * 9 8 6 11 11 C 1.54893 * 110.75832 * 273.54686 * 9 8 6 12 12 C 1.54270 * 104.19545 * 203.74634 * 11 9 8 13 13 C 1.53869 * 106.59684 * 23.60595 * 12 11 9 14 14 H 1.09003 * 110.03349 * 240.66270 * 13 12 11 15 15 C 1.53005 * 110.02932 * 119.29102 * 13 12 11 16 16 C 1.50696 * 109.47353 * 66.44808 * 15 13 12 17 17 O 1.21284 * 120.00096 * 0.02562 * 16 15 13 18 18 N 1.34774 * 119.99838 * 180.02562 * 16 15 13 19 19 C 1.46506 * 120.00072 * 180.02562 * 18 16 15 20 20 C 1.50703 * 109.47289 * 179.97438 * 19 18 16 21 21 H 1.07994 * 119.99399 * 0.02562 * 20 19 18 22 22 C 1.37874 * 119.99789 * 179.97438 * 20 19 18 23 23 N 1.31518 * 120.00144 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99733 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46762 * 60.00562 * 24 22 20 26 26 H 1.48506 * 109.46725 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47116 * 300.00217 * 24 22 20 28 28 C 1.54261 * 106.60229 * 0.02562 * 13 12 11 29 29 H 1.09004 * 109.46708 * 300.00279 * 1 2 3 30 30 H 1.09003 * 109.46864 * 59.99757 * 1 2 3 31 31 H 1.08993 * 109.47579 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47043 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47011 * 299.99713 * 3 2 1 34 34 H 1.09004 * 109.46976 * 60.00189 * 3 2 1 35 35 H 1.08998 * 109.47826 * 300.00270 * 4 2 1 36 36 H 1.09003 * 109.46813 * 60.00498 * 4 2 1 37 37 H 1.08998 * 109.47546 * 179.97438 * 4 2 1 38 38 H 0.97003 * 119.99700 * 0.02562 * 8 6 5 39 39 H 1.08999 * 110.48414 * 85.06281 * 11 9 8 40 40 H 1.08998 * 110.48302 * 322.42222 * 11 9 8 41 41 H 1.09003 * 110.02436 * 264.32379 * 12 11 9 42 42 H 1.08995 * 110.02993 * 142.89394 * 12 11 9 43 43 H 1.09004 * 109.46832 * 306.44941 * 15 13 12 44 44 H 1.09001 * 109.47420 * 186.45379 * 15 13 12 45 45 H 0.97001 * 120.00676 * 359.97438 * 18 16 15 46 46 H 1.09001 * 109.47060 * 300.00359 * 19 18 16 47 47 H 1.09004 * 109.47073 * 59.99848 * 19 18 16 48 48 H 0.96997 * 119.99752 * 179.97438 * 23 22 20 49 49 H 1.08996 * 110.48951 * 95.06614 * 28 13 12 50 50 H 1.09007 * 110.48350 * 217.71103 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6846 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9515 -2.5097 0.5036 8 7 2.0671 -2.6655 2.4172 9 6 1.6739 -4.0669 2.5831 10 1 1.6524 -4.5772 1.6201 11 6 0.2998 -4.1715 3.2904 12 6 0.3079 -5.5767 3.9269 13 6 1.7848 -5.9699 4.1052 14 1 2.0026 -6.8723 3.5340 15 6 2.0903 -6.2014 5.5865 16 6 1.3333 -7.4104 6.0725 17 8 0.6201 -8.0266 5.3093 18 7 1.4489 -7.8069 7.3554 19 6 0.7134 -8.9826 7.8279 20 6 1.0143 -9.2106 9.2869 21 1 1.6858 -8.5459 9.8099 22 6 0.4314 -10.2670 9.9541 23 7 -0.3867 -11.0761 9.3171 24 14 0.8049 -10.5499 11.7624 25 1 0.3904 -9.3584 12.5457 26 1 0.0592 -11.7416 12.2412 27 1 2.2622 -10.7751 11.9375 28 6 2.6227 -4.7897 3.5715 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1299 -0.7209 -1.2495 38 1 2.6261 -2.2364 3.0837 39 1 -0.5098 -4.0855 2.5656 40 1 0.2075 -3.4048 4.0596 41 1 -0.1909 -6.2877 3.2682 42 1 -0.1912 -5.5507 4.8955 43 1 1.7857 -5.3268 6.1613 44 1 3.1600 -6.3664 5.7154 45 1 2.0196 -7.3144 7.9659 46 1 -0.3563 -8.8182 7.6984 47 1 1.0187 -9.8572 7.2534 48 1 -0.7965 -11.8195 9.7864 49 1 2.9053 -4.1232 4.3863 50 1 3.5083 -5.1550 3.0515 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907804374.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:19 Heat of formation + Delta-G solvation = -172.772148 kcal Electronic energy + Delta-G solvation = -27662.838730 eV Core-core repulsion = 23687.922128 eV Total energy + Delta-G solvation = -3974.916602 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.82800 -40.80709 -39.41855 -37.81216 -36.11031 -35.47607 -34.56775 -34.31363 -31.81757 -29.59705 -29.10055 -28.34346 -28.26767 -26.59774 -24.41672 -23.65690 -21.68143 -21.61974 -21.06284 -20.39253 -19.15051 -18.83754 -17.75252 -17.41557 -17.16814 -17.06277 -16.84304 -16.47329 -16.03126 -15.90209 -15.49778 -15.32545 -14.64322 -14.54924 -14.39344 -14.25125 -13.99110 -13.72549 -13.38035 -13.29105 -13.13115 -12.96650 -12.90299 -12.87699 -12.83372 -12.68809 -12.65056 -12.33363 -12.24332 -12.22004 -12.07161 -11.82651 -11.59581 -11.49452 -11.36559 -11.35186 -11.07885 -10.78052 -10.61303 -10.13687 -9.75944 -8.28339 -6.45192 1.19122 1.43319 1.47445 1.55654 1.79480 1.88893 2.34334 2.68284 3.06370 3.16984 3.54087 3.62556 3.77935 3.82621 3.91596 3.97499 4.09281 4.26822 4.35216 4.45967 4.51721 4.58326 4.62992 4.63366 4.76289 4.76951 4.78882 4.84057 4.87055 4.90560 4.90646 5.03350 5.08728 5.15863 5.16643 5.19866 5.26355 5.30255 5.33881 5.39263 5.48053 5.50086 5.53514 5.64208 5.74657 5.87295 6.47386 6.66836 6.99627 7.24932 7.40299 7.59690 8.83536 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.040045 B = 0.001702 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.051840 B =16447.462547 C =16593.176257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.126 3.874 3 C -0.135 4.135 4 C -0.180 4.180 5 O -0.368 6.368 6 C 0.644 3.356 7 O -0.596 6.596 8 N -0.689 5.689 9 C 0.162 3.838 10 H 0.081 0.919 11 C -0.128 4.128 12 C -0.106 4.106 13 C -0.070 4.070 14 H 0.064 0.936 15 C -0.120 4.120 16 C 0.488 3.512 17 O -0.601 6.601 18 N -0.712 5.712 19 C 0.266 3.734 20 C -0.557 4.557 21 H 0.085 0.915 22 C 0.002 3.998 23 N -0.932 5.932 24 Si 0.985 3.015 25 H -0.262 1.262 26 H -0.287 1.287 27 H -0.261 1.261 28 C -0.107 4.107 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.419 0.581 39 H 0.052 0.948 40 H 0.080 0.920 41 H 0.043 0.957 42 H 0.051 0.949 43 H 0.119 0.881 44 H 0.123 0.877 45 H 0.408 0.592 46 H -0.016 1.016 47 H -0.016 1.016 48 H 0.268 0.732 49 H 0.107 0.893 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.257 27.568 -15.629 33.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.089 3.911 3 C -0.192 4.192 4 C -0.237 4.237 5 O -0.282 6.282 6 C 0.397 3.603 7 O -0.487 6.487 8 N -0.349 5.349 9 C 0.058 3.942 10 H 0.099 0.901 11 C -0.167 4.167 12 C -0.145 4.145 13 C -0.090 4.090 14 H 0.083 0.917 15 C -0.159 4.159 16 C 0.277 3.723 17 O -0.483 6.483 18 N -0.362 5.362 19 C 0.142 3.858 20 C -0.595 4.595 21 H 0.103 0.897 22 C -0.197 4.197 23 N -0.570 5.570 24 Si 0.808 3.192 25 H -0.186 1.186 26 H -0.212 1.212 27 H -0.186 1.186 28 C -0.145 4.145 29 H 0.080 0.920 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.118 0.882 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.257 0.743 39 H 0.071 0.929 40 H 0.099 0.901 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.137 0.863 44 H 0.141 0.859 45 H 0.244 0.756 46 H 0.002 0.998 47 H 0.002 0.998 48 H 0.077 0.923 49 H 0.125 0.875 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.305 26.790 -16.597 32.859 hybrid contribution -0.283 -0.731 1.128 1.374 sum 9.022 26.059 -15.469 31.619 Atomic orbital electron populations 1.22476 0.94294 1.03529 1.03494 1.22378 0.94348 0.92775 0.81575 1.21880 1.02515 0.90574 1.04267 1.22470 1.01706 1.02143 0.97385 1.86305 1.71560 1.23067 1.47303 1.18353 0.78664 0.80839 0.82449 1.90911 1.42215 1.70967 1.44561 1.44670 1.55008 1.12070 1.23132 1.21881 0.94313 0.78597 0.99413 0.90108 1.22727 0.97355 0.97114 0.99506 1.21975 0.96862 0.95550 1.00082 1.21377 0.94591 0.98564 0.94426 0.91732 1.21850 1.02057 0.95067 0.96931 1.21742 0.82050 0.86956 0.81595 1.90647 1.42614 1.58894 1.56163 1.46252 1.47982 1.30731 1.11251 1.18489 0.90136 0.83027 0.94101 1.21623 1.29297 1.13750 0.94810 0.89711 1.26089 0.94191 0.95059 1.04386 1.70141 1.30761 1.16944 1.39194 0.85203 0.78797 0.77826 0.77356 1.18634 1.21235 1.18580 1.22608 0.97214 0.95951 0.98677 0.91997 0.89292 0.92187 0.91012 0.88170 0.91190 0.92133 0.89318 0.91766 0.74315 0.92936 0.90100 0.93797 0.93048 0.86282 0.85878 0.75599 0.99843 0.99765 0.92332 0.87481 0.88933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.88 8.37 71.98 0.60 -2.27 16 2 C 0.13 1.90 1.13 -10.80 -0.01 1.88 16 3 C -0.14 -1.18 8.85 71.98 0.64 -0.54 16 4 C -0.18 -2.74 8.37 71.98 0.60 -2.14 16 5 O -0.37 -6.80 9.94 -55.38 -0.55 -7.35 16 6 C 0.64 13.76 8.05 129.79 1.05 14.81 16 7 O -0.60 -16.34 11.61 19.79 0.23 -16.11 16 8 N -0.69 -11.01 5.21 -563.94 -2.94 -13.95 16 9 C 0.16 2.93 3.18 46.29 0.15 3.07 16 10 H 0.08 1.80 7.70 -2.39 -0.02 1.78 16 11 C -0.13 -2.75 6.51 31.67 0.21 -2.55 16 12 C -0.11 -2.82 5.34 31.32 0.17 -2.65 16 13 C -0.07 -1.56 2.56 -10.07 -0.03 -1.59 16 14 H 0.06 1.72 7.97 -2.39 -0.02 1.70 16 15 C -0.12 -2.67 4.85 29.85 0.14 -2.52 16 16 C 0.49 18.46 7.35 87.66 0.64 19.11 16 17 O -0.60 -28.90 15.07 -3.04 -0.05 -28.94 16 18 N -0.71 -29.21 5.55 -466.77 -2.59 -31.80 16 19 C 0.27 14.60 5.43 85.63 0.46 15.07 16 20 C -0.56 -30.22 9.28 25.60 0.24 -29.98 16 21 H 0.08 4.11 7.60 -2.91 -0.02 4.08 16 22 C 0.00 0.12 5.46 84.65 0.46 0.59 16 23 N -0.93 -56.56 13.29 21.45 0.28 -56.27 16 24 Si 0.99 42.15 29.54 68.60 2.03 44.17 16 25 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 26 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 27 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 28 C -0.11 -1.46 5.96 31.67 0.19 -1.27 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 1.34 5.88 -2.39 -0.01 1.32 16 32 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.06 1.30 5.88 -2.39 -0.01 1.28 16 36 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.42 4.22 8.63 -92.71 -0.80 3.42 16 39 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.05 1.52 7.32 -2.39 -0.02 1.50 16 43 H 0.12 2.03 8.14 -2.38 -0.02 2.01 16 44 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.41 13.49 8.32 -92.71 -0.77 12.72 16 46 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 47 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 48 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 49 H 0.11 0.89 7.73 -2.39 -0.02 0.87 16 50 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -78.13 399.69 1.29 -76.84 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: -0.64 Total: 24.39 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 5.51 Total: 9.01 kcal Atomic # 7 Polarization: -96.77 SS G_CDS: -5.24 Total: -102.01 kcal Atomic # 8 Polarization: -52.03 SS G_CDS: -0.37 Total: -52.39 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -78.13 1.29 -76.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907804374.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.930 kcal (2) G-P(sol) polarization free energy of solvation -78.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds