Wall clock time and date at job start Tue Mar 31 2020 14:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.37102 * 119.99639 * 2 1 4 4 H 1.07997 * 120.00314 * 202.87217 * 3 2 1 5 5 C 1.38953 * 119.99808 * 22.87756 * 3 2 1 6 6 N 1.31408 * 119.99982 * 11.02096 * 5 3 2 7 7 Si 1.86799 * 119.99814 * 191.01877 * 5 3 2 8 8 H 1.48507 * 109.47201 * 89.99817 * 7 5 3 9 9 H 1.48494 * 109.47384 * 209.99821 * 7 5 3 10 10 H 1.48505 * 109.47393 * 330.00149 * 7 5 3 11 11 C 1.34776 * 120.00681 * 180.02562 * 2 1 3 12 12 O 1.21290 * 120.00432 * 180.02562 * 11 2 1 13 13 C 1.50700 * 119.99598 * 0.02562 * 11 2 1 14 14 H 1.08997 * 109.47622 * 59.99251 * 13 11 2 15 15 C 1.53005 * 109.46639 * 299.99287 * 13 11 2 16 16 C 1.53007 * 109.46954 * 180.02562 * 15 13 11 17 17 C 1.53002 * 109.46726 * 60.00167 * 16 15 13 18 18 C 1.53002 * 109.47450 * 299.99970 * 17 16 15 19 19 C 1.52997 * 109.47023 * 179.97438 * 13 11 2 20 20 H 1.09002 * 109.47165 * 299.99735 * 19 13 11 21 21 N 1.46506 * 109.47310 * 59.99610 * 19 13 11 22 22 C 1.34775 * 119.99684 * 204.99825 * 21 19 13 23 23 O 1.21512 * 120.00304 * 0.02562 * 22 21 19 24 24 O 1.34637 * 119.99721 * 179.97438 * 22 21 19 25 25 C 1.45202 * 117.00084 * 180.02562 * 24 22 21 26 26 C 1.52992 * 109.47386 * 60.00006 * 25 24 22 27 27 C 1.53001 * 109.47138 * 180.02562 * 25 24 22 28 28 C 1.52998 * 109.46773 * 299.99747 * 25 24 22 29 29 H 1.09003 * 109.47403 * 272.85974 * 1 2 3 30 30 H 1.09003 * 109.47576 * 32.86349 * 1 2 3 31 31 H 1.09004 * 109.46950 * 152.86029 * 1 2 3 32 32 H 0.97003 * 120.00025 * 180.02562 * 6 5 3 33 33 H 1.08998 * 109.47608 * 300.00311 * 15 13 11 34 34 H 1.09000 * 109.46801 * 60.00769 * 15 13 11 35 35 H 1.08995 * 109.46941 * 179.97438 * 16 15 13 36 36 H 1.08998 * 109.47123 * 300.00493 * 16 15 13 37 37 H 1.08998 * 109.47053 * 60.00283 * 17 16 15 38 38 H 1.09005 * 109.47149 * 179.97438 * 17 16 15 39 39 H 1.08996 * 109.47207 * 180.02562 * 18 17 16 40 40 H 1.08997 * 109.46724 * 300.00211 * 18 17 16 41 41 H 0.96994 * 119.99650 * 25.00102 * 21 19 13 42 42 H 1.08997 * 109.47186 * 60.00411 * 26 25 24 43 43 H 1.09002 * 109.47527 * 180.02562 * 26 25 24 44 44 H 1.09003 * 109.47229 * 300.00173 * 26 25 24 45 45 H 1.09002 * 109.47676 * 59.99404 * 27 25 24 46 46 H 1.08999 * 109.47370 * 179.97438 * 27 25 24 47 47 H 1.09007 * 109.46934 * 299.99395 * 27 25 24 48 48 H 1.09004 * 109.47414 * 60.00438 * 28 25 24 49 49 H 1.08999 * 109.47664 * 180.02562 * 28 25 24 50 50 H 1.09004 * 109.47742 * 300.00380 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1503 1.1874 0.0000 4 1 3.1666 1.2243 -0.3635 5 6 1.5375 2.3434 0.4678 6 7 0.3916 2.2671 1.1066 7 14 2.3424 4.0057 0.1888 8 1 1.8704 4.5743 -1.0994 9 1 1.9792 4.9241 1.2977 10 1 3.8176 3.8405 0.1459 11 6 2.1389 -1.1671 -0.0005 12 8 3.3518 -1.1671 -0.0001 13 6 1.3855 -2.4722 -0.0017 14 1 0.7591 -2.5294 -0.8918 15 6 0.5055 -2.5541 1.2473 16 6 -0.2590 -3.8795 1.2465 17 6 0.7358 -5.0420 1.2463 18 6 1.6158 -4.9601 -0.0026 19 6 2.3798 -3.6351 -0.0027 20 1 3.0064 -3.5765 -0.8927 21 7 3.2222 -3.5585 1.1935 22 6 4.4484 -4.1178 1.1911 23 8 4.8554 -4.6852 0.1966 24 8 5.2227 -4.0469 2.2902 25 6 6.5317 -4.6710 2.2158 26 6 7.3453 -4.0176 1.0970 27 6 7.2597 -4.4897 3.5492 28 6 6.3689 -6.1639 1.9231 29 1 -0.3634 0.0513 1.0264 30 1 -0.3634 0.8632 -0.5576 31 1 -0.3633 -0.9146 -0.4688 32 1 -0.0364 3.0741 1.4329 33 1 1.1319 -2.4969 2.1375 34 1 -0.2028 -1.7257 1.2476 35 1 -0.8855 -3.9380 2.1365 36 1 -0.8853 -3.9371 0.3563 37 1 1.3621 -4.9844 2.1366 38 1 0.1912 -5.9863 1.2462 39 1 2.3242 -5.7885 -0.0029 40 1 0.9894 -5.0177 -0.8927 41 1 2.8973 -3.1053 1.9871 42 1 7.4613 -2.9541 1.3055 43 1 8.3278 -4.4864 1.0408 44 1 6.8265 -4.1472 0.1471 45 1 6.6799 -4.9554 4.3461 46 1 8.2421 -4.9585 3.4935 47 1 7.3756 -3.4261 3.7582 48 1 5.8501 -6.2935 0.9733 49 1 7.3514 -6.6326 1.8677 50 1 5.7892 -6.6294 2.7202 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931240580.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:44 Heat of formation + Delta-G solvation = -119.393031 kcal Electronic energy + Delta-G solvation = -30499.728647 eV Core-core repulsion = 26527.126738 eV Total energy + Delta-G solvation = -3972.601910 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.63318 -39.56216 -37.50193 -36.33436 -34.74090 -33.98210 -33.03044 -31.85537 -30.46264 -29.43929 -27.35105 -27.24672 -26.29250 -24.80849 -23.02892 -22.64157 -21.82728 -20.08526 -19.20585 -18.59680 -17.84726 -16.88899 -16.24427 -16.12393 -15.71592 -15.15847 -15.02845 -14.57184 -14.47241 -14.15615 -14.05189 -13.91576 -13.55196 -13.38620 -12.96820 -12.45934 -12.35222 -12.33563 -12.09633 -12.01088 -11.92558 -11.78908 -11.70059 -11.64383 -11.31990 -11.24991 -11.20417 -11.10891 -10.95895 -10.85621 -10.47099 -10.37820 -10.27228 -10.22281 -10.10642 -9.76614 -9.66709 -8.99878 -8.68422 -8.22799 -7.66252 -6.30682 -3.87309 2.57623 3.16259 3.25149 3.30803 3.35405 3.88552 4.13335 4.50098 4.70744 4.82567 4.85945 4.90343 4.99016 5.01228 5.13762 5.13902 5.36790 5.48709 5.49174 5.58481 5.60949 5.65745 5.70909 5.72534 5.78722 5.81475 5.85300 5.87759 5.97438 6.03673 6.06678 6.18717 6.23457 6.29932 6.34138 6.36091 6.39246 6.49659 6.53037 6.59305 6.79600 6.86402 6.96569 7.21498 7.57180 7.92501 8.14685 8.49766 8.86489 9.20615 9.44026 10.00270 10.72804 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.012165 B = 0.004257 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.111061 B = 6575.163194 C = 8220.740880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.446 5.446 3 C -0.303 4.303 4 H 0.097 0.903 5 C 0.031 3.969 6 N -0.885 5.885 7 Si 0.924 3.076 8 H -0.278 1.278 9 H -0.284 1.284 10 H -0.270 1.270 11 C 0.448 3.552 12 O -0.577 6.577 13 C -0.108 4.108 14 H 0.096 0.904 15 C -0.124 4.124 16 C -0.117 4.117 17 C -0.118 4.118 18 C -0.131 4.131 19 C 0.191 3.809 20 H 0.092 0.908 21 N -0.679 5.679 22 C 0.659 3.341 23 O -0.579 6.579 24 O -0.367 6.367 25 C 0.137 3.863 26 C -0.183 4.183 27 C -0.140 4.140 28 C -0.181 4.181 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.028 0.972 32 H 0.266 0.734 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.402 0.598 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.089 0.911 45 H 0.064 0.936 46 H 0.076 0.924 47 H 0.067 0.933 48 H 0.088 0.912 49 H 0.065 0.935 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.335 -14.422 2.985 14.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.165 5.165 3 C -0.431 4.431 4 H 0.115 0.885 5 C -0.172 4.172 6 N -0.525 5.525 7 Si 0.752 3.248 8 H -0.204 1.204 9 H -0.210 1.210 10 H -0.195 1.195 11 C 0.235 3.765 12 O -0.461 6.461 13 C -0.130 4.130 14 H 0.114 0.886 15 C -0.162 4.162 16 C -0.154 4.154 17 C -0.156 4.156 18 C -0.170 4.170 19 C 0.087 3.913 20 H 0.110 0.890 21 N -0.336 5.336 22 C 0.412 3.588 23 O -0.470 6.470 24 O -0.282 6.282 25 C 0.100 3.900 26 C -0.240 4.240 27 C -0.197 4.197 28 C -0.238 4.238 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.047 0.953 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.237 0.763 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.108 0.892 45 H 0.083 0.917 46 H 0.095 0.905 47 H 0.086 0.914 48 H 0.107 0.893 49 H 0.084 0.916 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.065 -14.541 2.613 14.918 hybrid contribution 0.036 1.243 0.284 1.276 sum 2.102 -13.298 2.896 13.771 Atomic orbital electron populations 1.21625 0.81463 0.98511 1.01591 1.43542 1.05325 1.04712 1.62933 1.19642 0.99631 0.83993 1.39856 0.88539 1.25302 0.96511 0.99950 0.95432 1.69977 1.17372 1.29219 1.35909 0.85948 0.79692 0.81419 0.77790 1.20445 1.20984 1.19453 1.19913 0.88018 0.84529 0.84023 1.90566 1.13642 1.86847 1.55040 1.21507 0.97051 0.94127 1.00295 0.88610 1.21809 0.98981 0.98507 0.96858 1.21562 0.97630 0.94427 1.01828 1.21517 0.97553 0.98076 0.98413 1.21981 0.98724 0.97737 0.98555 1.20544 0.90038 0.92834 0.87867 0.88976 1.44513 1.13420 1.58133 1.17501 1.17929 0.81282 0.78270 0.81325 1.90821 1.73495 1.48682 1.34008 1.86294 1.28798 1.74129 1.39000 1.21938 0.79061 0.92321 0.96655 1.22497 0.99955 1.00923 1.00608 1.21847 0.99552 1.03272 0.95075 1.22505 1.02802 0.94289 1.04226 0.92019 0.91680 0.95348 0.92356 0.92081 0.89284 0.91948 0.91846 0.92068 0.92331 0.91391 0.90922 0.76279 0.92039 0.91724 0.89177 0.91725 0.90503 0.91428 0.89277 0.91590 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.37 7.04 59.84 0.42 2.79 16 2 N -0.45 -10.99 3.02 -122.20 -0.37 -11.35 16 3 C -0.30 -8.33 9.28 -14.93 -0.14 -8.47 16 4 H 0.10 2.82 7.41 -52.49 -0.39 2.43 16 5 C 0.03 0.80 5.13 -17.47 -0.09 0.71 16 6 N -0.88 -23.07 10.61 55.50 0.59 -22.48 16 7 Si 0.92 20.78 29.57 -169.99 -5.03 15.76 16 8 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 11 C 0.45 10.36 6.86 -10.99 -0.08 10.28 16 12 O -0.58 -15.48 14.90 5.55 0.08 -15.40 16 13 C -0.11 -1.84 1.52 -91.77 -0.14 -1.98 16 14 H 0.10 1.49 7.41 -51.93 -0.38 1.10 16 15 C -0.12 -1.84 4.64 -26.72 -0.12 -1.97 16 16 C -0.12 -1.35 5.92 -26.73 -0.16 -1.51 16 17 C -0.12 -1.36 5.77 -26.73 -0.15 -1.51 16 18 C -0.13 -1.71 5.60 -26.76 -0.15 -1.86 16 19 C 0.19 3.17 1.78 -67.96 -0.12 3.05 16 20 H 0.09 1.78 7.53 -51.93 -0.39 1.38 16 21 N -0.68 -11.86 3.03 -58.75 -0.18 -12.04 16 22 C 0.66 12.13 8.02 54.05 0.43 12.57 16 23 O -0.58 -11.34 11.54 -19.28 -0.22 -11.56 16 24 O -0.37 -6.27 9.94 -40.32 -0.40 -6.67 16 25 C 0.14 1.91 1.13 -90.62 -0.10 1.81 16 26 C -0.18 -2.64 8.37 37.15 0.31 -2.33 16 27 C -0.14 -1.52 8.85 37.16 0.33 -1.19 16 28 C -0.18 -2.26 8.37 37.16 0.31 -1.94 16 29 H 0.06 1.35 6.49 -51.93 -0.34 1.01 16 30 H 0.06 1.48 7.13 -51.93 -0.37 1.11 16 31 H 0.03 0.49 5.79 -51.93 -0.30 0.19 16 32 H 0.27 6.62 8.31 -40.82 -0.34 6.29 16 33 H 0.06 0.96 6.51 -51.93 -0.34 0.62 16 34 H 0.09 1.41 4.58 -51.93 -0.24 1.17 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.75 7.60 -51.93 -0.39 0.35 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.40 6.94 6.98 -40.82 -0.28 6.65 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.09 1.55 5.88 -51.93 -0.31 1.24 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.09 1.32 5.88 -51.93 -0.31 1.01 16 49 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 377.41 15.07 5.69 5.69 Total: -1.00 -31.24 377.41 -7.53 -38.77 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -8.25 Total: 10.84 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: 0.55 Total: 8.45 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 0.04 Total: -45.88 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -0.54 Total: -33.63 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.24 -7.53 -38.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931240580.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.626 kcal (2) G-P(sol) polarization free energy of solvation -31.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds