Wall clock time and date at job start Tue Mar 31 2020 14:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.37102 * 119.99639 * 2 1 4 4 H 1.07997 * 120.00314 * 202.87217 * 3 2 1 5 5 C 1.38953 * 119.99808 * 22.87756 * 3 2 1 6 6 N 1.31408 * 119.99982 * 11.02096 * 5 3 2 7 7 Si 1.86799 * 119.99814 * 191.01877 * 5 3 2 8 8 H 1.48507 * 109.47201 * 89.99817 * 7 5 3 9 9 H 1.48494 * 109.47384 * 209.99821 * 7 5 3 10 10 H 1.48505 * 109.47393 * 330.00149 * 7 5 3 11 11 C 1.34776 * 120.00681 * 180.02562 * 2 1 3 12 12 O 1.21290 * 120.00432 * 180.02562 * 11 2 1 13 13 C 1.50700 * 119.99598 * 0.02562 * 11 2 1 14 14 H 1.08997 * 109.47622 * 59.99251 * 13 11 2 15 15 C 1.53005 * 109.46639 * 299.99287 * 13 11 2 16 16 C 1.53007 * 109.46954 * 180.02562 * 15 13 11 17 17 C 1.53002 * 109.46726 * 60.00167 * 16 15 13 18 18 C 1.53002 * 109.47450 * 299.99970 * 17 16 15 19 19 C 1.52997 * 109.47023 * 179.97438 * 13 11 2 20 20 H 1.09002 * 109.47165 * 299.99735 * 19 13 11 21 21 N 1.46506 * 109.47310 * 59.99610 * 19 13 11 22 22 C 1.34775 * 119.99684 * 204.99825 * 21 19 13 23 23 O 1.21512 * 120.00304 * 0.02562 * 22 21 19 24 24 O 1.34637 * 119.99721 * 179.97438 * 22 21 19 25 25 C 1.45202 * 117.00084 * 180.02562 * 24 22 21 26 26 C 1.52992 * 109.47386 * 60.00006 * 25 24 22 27 27 C 1.53001 * 109.47138 * 180.02562 * 25 24 22 28 28 C 1.52998 * 109.46773 * 299.99747 * 25 24 22 29 29 H 1.09003 * 109.47403 * 272.85974 * 1 2 3 30 30 H 1.09003 * 109.47576 * 32.86349 * 1 2 3 31 31 H 1.09004 * 109.46950 * 152.86029 * 1 2 3 32 32 H 0.97003 * 120.00025 * 180.02562 * 6 5 3 33 33 H 1.08998 * 109.47608 * 300.00311 * 15 13 11 34 34 H 1.09000 * 109.46801 * 60.00769 * 15 13 11 35 35 H 1.08995 * 109.46941 * 179.97438 * 16 15 13 36 36 H 1.08998 * 109.47123 * 300.00493 * 16 15 13 37 37 H 1.08998 * 109.47053 * 60.00283 * 17 16 15 38 38 H 1.09005 * 109.47149 * 179.97438 * 17 16 15 39 39 H 1.08996 * 109.47207 * 180.02562 * 18 17 16 40 40 H 1.08997 * 109.46724 * 300.00211 * 18 17 16 41 41 H 0.96994 * 119.99650 * 25.00102 * 21 19 13 42 42 H 1.08997 * 109.47186 * 60.00411 * 26 25 24 43 43 H 1.09002 * 109.47527 * 180.02562 * 26 25 24 44 44 H 1.09003 * 109.47229 * 300.00173 * 26 25 24 45 45 H 1.09002 * 109.47676 * 59.99404 * 27 25 24 46 46 H 1.08999 * 109.47370 * 179.97438 * 27 25 24 47 47 H 1.09007 * 109.46934 * 299.99395 * 27 25 24 48 48 H 1.09004 * 109.47414 * 60.00438 * 28 25 24 49 49 H 1.08999 * 109.47664 * 180.02562 * 28 25 24 50 50 H 1.09004 * 109.47742 * 300.00380 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1503 1.1874 0.0000 4 1 3.1666 1.2243 -0.3635 5 6 1.5375 2.3434 0.4678 6 7 0.3916 2.2671 1.1066 7 14 2.3424 4.0057 0.1888 8 1 1.8704 4.5743 -1.0994 9 1 1.9792 4.9241 1.2977 10 1 3.8176 3.8405 0.1459 11 6 2.1389 -1.1671 -0.0005 12 8 3.3518 -1.1671 -0.0001 13 6 1.3855 -2.4722 -0.0017 14 1 0.7591 -2.5294 -0.8918 15 6 0.5055 -2.5541 1.2473 16 6 -0.2590 -3.8795 1.2465 17 6 0.7358 -5.0420 1.2463 18 6 1.6158 -4.9601 -0.0026 19 6 2.3798 -3.6351 -0.0027 20 1 3.0064 -3.5765 -0.8927 21 7 3.2222 -3.5585 1.1935 22 6 4.4484 -4.1178 1.1911 23 8 4.8554 -4.6852 0.1966 24 8 5.2227 -4.0469 2.2902 25 6 6.5317 -4.6710 2.2158 26 6 7.3453 -4.0176 1.0970 27 6 7.2597 -4.4897 3.5492 28 6 6.3689 -6.1639 1.9231 29 1 -0.3634 0.0513 1.0264 30 1 -0.3634 0.8632 -0.5576 31 1 -0.3633 -0.9146 -0.4688 32 1 -0.0364 3.0741 1.4329 33 1 1.1319 -2.4969 2.1375 34 1 -0.2028 -1.7257 1.2476 35 1 -0.8855 -3.9380 2.1365 36 1 -0.8853 -3.9371 0.3563 37 1 1.3621 -4.9844 2.1366 38 1 0.1912 -5.9863 1.2462 39 1 2.3242 -5.7885 -0.0029 40 1 0.9894 -5.0177 -0.8927 41 1 2.8973 -3.1053 1.9871 42 1 7.4613 -2.9541 1.3055 43 1 8.3278 -4.4864 1.0408 44 1 6.8265 -4.1472 0.1471 45 1 6.6799 -4.9554 4.3461 46 1 8.2421 -4.9585 3.4935 47 1 7.3756 -3.4261 3.7582 48 1 5.8501 -6.2935 0.9733 49 1 7.3514 -6.6326 1.8677 50 1 5.7892 -6.6294 2.7202 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931240580.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:43 Heat of formation + Delta-G solvation = -138.418121 kcal Electronic energy + Delta-G solvation = -30500.553637 eV Core-core repulsion = 26527.126738 eV Total energy + Delta-G solvation = -3973.426900 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.00568 -41.02776 -39.06103 -37.63697 -36.66174 -35.26458 -34.32153 -33.67148 -31.87578 -30.66508 -28.35724 -28.28301 -28.13358 -26.61066 -24.38984 -23.93357 -23.02214 -21.40671 -20.65030 -19.96783 -19.20429 -18.86656 -17.83338 -17.48699 -17.10789 -16.68313 -16.32772 -16.20963 -15.83382 -15.68274 -15.43992 -15.28896 -14.85084 -14.57176 -14.42272 -13.94756 -13.52861 -13.43395 -13.41706 -13.33815 -13.14404 -13.04515 -12.99459 -12.90303 -12.84385 -12.83231 -12.60131 -12.47006 -12.32817 -12.20371 -12.17893 -12.10689 -11.54643 -11.39924 -11.34077 -11.04055 -11.01683 -10.87476 -10.26332 -9.89028 -9.63287 -8.31052 -5.95854 1.30460 1.35316 1.39020 1.50104 1.94057 2.07480 2.27228 3.04609 3.11285 3.26776 3.62764 3.78067 3.81509 3.84073 3.90764 3.96668 4.17603 4.28228 4.32493 4.43054 4.50941 4.55870 4.60440 4.62408 4.71940 4.75737 4.76557 4.77245 4.84303 4.87864 4.99899 5.05195 5.08146 5.14547 5.19766 5.24918 5.29529 5.31295 5.34447 5.39737 5.45769 5.48799 5.49777 5.58391 5.68012 6.11990 6.50105 6.53765 7.20981 7.46607 7.52483 8.09433 8.69793 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.012165 B = 0.004257 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.111061 B = 6575.163194 C = 8220.740880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.462 5.462 3 C -0.341 4.341 4 H 0.063 0.937 5 C 0.002 3.998 6 N -0.893 5.893 7 Si 0.982 3.018 8 H -0.266 1.266 9 H -0.272 1.272 10 H -0.282 1.282 11 C 0.440 3.560 12 O -0.624 6.624 13 C -0.094 4.094 14 H 0.121 0.879 15 C -0.118 4.118 16 C -0.107 4.107 17 C -0.113 4.113 18 C -0.120 4.120 19 C 0.191 3.809 20 H 0.056 0.944 21 N -0.679 5.679 22 C 0.651 3.349 23 O -0.597 6.597 24 O -0.379 6.379 25 C 0.122 3.878 26 C -0.179 4.179 27 C -0.134 4.134 28 C -0.173 4.173 29 H 0.054 0.946 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.272 0.728 33 H 0.046 0.954 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.050 0.950 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.096 0.904 41 H 0.401 0.599 42 H 0.044 0.956 43 H 0.097 0.903 44 H 0.056 0.944 45 H 0.073 0.927 46 H 0.107 0.893 47 H 0.058 0.942 48 H 0.061 0.939 49 H 0.093 0.907 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.010 -15.914 3.822 16.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.180 5.180 3 C -0.469 4.469 4 H 0.081 0.919 5 C -0.200 4.200 6 N -0.532 5.532 7 Si 0.807 3.193 8 H -0.192 1.192 9 H -0.197 1.197 10 H -0.207 1.207 11 C 0.229 3.771 12 O -0.511 6.511 13 C -0.116 4.116 14 H 0.138 0.862 15 C -0.156 4.156 16 C -0.144 4.144 17 C -0.150 4.150 18 C -0.159 4.159 19 C 0.087 3.913 20 H 0.075 0.925 21 N -0.336 5.336 22 C 0.405 3.595 23 O -0.489 6.489 24 O -0.294 6.294 25 C 0.085 3.915 26 C -0.236 4.236 27 C -0.191 4.191 28 C -0.230 4.230 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.069 0.931 38 H 0.104 0.896 39 H 0.077 0.923 40 H 0.114 0.886 41 H 0.236 0.764 42 H 0.064 0.936 43 H 0.116 0.884 44 H 0.075 0.925 45 H 0.092 0.908 46 H 0.126 0.874 47 H 0.077 0.923 48 H 0.080 0.920 49 H 0.112 0.888 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.676 -16.039 3.458 16.422 hybrid contribution 0.540 1.721 0.021 1.804 sum 1.217 -14.318 3.478 14.785 Atomic orbital electron populations 1.21587 0.79400 0.99751 1.01245 1.43780 1.06667 1.04430 1.63163 1.19506 0.99161 0.86216 1.42023 0.91876 1.25935 0.97025 1.02356 0.94688 1.70035 1.17633 1.30226 1.35322 0.85103 0.78028 0.77770 0.78447 1.19160 1.19689 1.20729 1.20993 0.87894 0.86148 0.82063 1.90533 1.16082 1.87860 1.56622 1.21480 0.97059 0.90403 1.02676 0.86161 1.21779 0.98338 1.00737 0.94747 1.21529 0.97346 0.91717 1.03808 1.21501 0.97246 0.99446 0.96837 1.21910 0.98643 0.94650 1.00681 1.20595 0.89630 0.94810 0.86244 0.92530 1.44612 1.13465 1.57841 1.17655 1.18125 0.81580 0.78298 0.81517 1.90807 1.73876 1.49519 1.34682 1.86302 1.30073 1.74573 1.38438 1.22420 0.77812 0.93060 0.98176 1.22457 1.01461 1.00428 0.99291 1.21880 1.00739 1.03218 0.93290 1.22421 1.04247 0.93324 1.03004 0.92748 0.93627 0.91101 0.91803 0.93494 0.89898 0.90062 0.89759 0.93109 0.89592 0.92266 0.88585 0.76391 0.93634 0.88434 0.92468 0.90756 0.87425 0.92297 0.91979 0.88784 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.16 7.04 127.77 0.90 6.06 16 2 N -0.46 -23.32 3.02 -658.90 -1.99 -25.31 16 3 C -0.34 -19.49 9.28 84.04 0.78 -18.71 16 4 H 0.06 3.95 7.41 -2.91 -0.02 3.92 16 5 C 0.00 0.10 5.13 84.93 0.44 0.53 16 6 N -0.89 -46.55 10.61 21.66 0.23 -46.32 16 7 Si 0.98 43.11 29.57 68.60 2.03 45.14 16 8 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 9 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 C 0.44 21.00 6.86 87.66 0.60 21.60 16 12 O -0.62 -35.48 14.90 -3.06 -0.05 -35.53 16 13 C -0.09 -3.17 1.52 -11.54 -0.02 -3.19 16 14 H 0.12 3.46 7.41 -2.39 -0.02 3.44 16 15 C -0.12 -3.32 4.64 30.60 0.14 -3.18 16 16 C -0.11 -2.06 5.92 30.60 0.18 -1.88 16 17 C -0.11 -2.25 5.77 30.60 0.18 -2.07 16 18 C -0.12 -2.92 5.60 30.58 0.17 -2.75 16 19 C 0.19 6.40 1.78 44.97 0.08 6.48 16 20 H 0.06 2.29 7.53 -2.39 -0.02 2.27 16 21 N -0.68 -24.59 3.03 -570.20 -1.73 -26.31 16 22 C 0.65 25.09 8.02 129.79 1.04 26.13 16 23 O -0.60 -24.59 11.54 19.80 0.23 -24.36 16 24 O -0.38 -13.34 9.94 -55.47 -0.55 -13.89 16 25 C 0.12 3.36 1.13 -10.80 -0.01 3.35 16 26 C -0.18 -5.30 8.37 71.98 0.60 -4.69 16 27 C -0.13 -2.69 8.85 71.98 0.64 -2.05 16 28 C -0.17 -4.13 8.37 71.98 0.60 -3.53 16 29 H 0.05 2.35 6.49 -2.39 -0.02 2.34 16 30 H 0.04 2.06 7.13 -2.39 -0.02 2.05 16 31 H 0.07 2.31 5.79 -2.39 -0.01 2.30 16 32 H 0.27 13.34 8.31 -92.71 -0.77 12.57 16 33 H 0.05 1.45 6.51 -2.39 -0.02 1.43 16 34 H 0.08 2.46 4.58 -2.39 -0.01 2.45 16 35 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.05 1.14 7.60 -2.39 -0.02 1.12 16 38 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.40 14.39 6.98 -92.71 -0.65 13.74 16 42 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.06 2.08 5.88 -2.39 -0.01 2.06 16 45 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 48 H 0.06 1.85 5.88 -2.39 -0.01 1.84 16 49 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 50 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -72.88 377.41 4.79 -68.09 By element: Atomic # 1 Polarization: 36.12 SS G_CDS: 0.29 Total: 36.41 kcal Atomic # 6 Polarization: 15.77 SS G_CDS: 6.32 Total: 22.09 kcal Atomic # 7 Polarization: -94.46 SS G_CDS: -3.48 Total: -97.94 kcal Atomic # 8 Polarization: -73.42 SS G_CDS: -0.37 Total: -73.78 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -72.88 4.79 -68.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931240580.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.332 kcal (2) G-P(sol) polarization free energy of solvation -72.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds