Wall clock time and date at job start Tue Mar 31 2020 14:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.47049 * 2 1 4 4 C 1.52998 * 109.47300 * 239.99833 * 2 1 3 5 5 O 1.45196 * 109.47210 * 119.99375 * 2 1 3 6 6 C 1.34635 * 116.99746 * 60.00217 * 5 2 1 7 7 O 1.21516 * 119.99834 * 0.02562 * 6 5 2 8 8 N 1.34774 * 120.00564 * 179.97438 * 6 5 2 9 9 C 1.47161 * 120.98330 * 0.02562 * 8 6 5 10 10 C 1.53300 * 108.37118 * 129.38539 * 9 8 6 11 11 O 1.42968 * 109.22612 * 52.35397 * 10 9 8 12 12 C 1.42893 * 114.20887 * 297.50525 * 11 10 9 13 13 C 1.52990 * 109.55769 * 302.52586 * 12 11 10 14 14 C 1.53195 * 109.34738 * 300.95636 * 13 12 11 15 15 N 1.46932 * 108.77517 * 305.43150 * 14 13 12 16 16 C 1.36939 * 120.63776 * 233.64856 * 15 14 13 17 17 H 1.07994 * 120.00388 * 29.31573 * 16 15 14 18 18 C 1.38812 * 119.99894 * 209.31432 * 16 15 14 19 19 N 1.31629 * 119.99846 * 24.33934 * 18 16 15 20 20 Si 1.86794 * 120.00220 * 204.34404 * 18 16 15 21 21 H 1.48499 * 109.47166 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.47008 * 299.99540 * 20 18 16 23 23 H 1.48500 * 109.47268 * 59.99635 * 20 18 16 24 24 C 1.46925 * 118.71825 * 53.92877 * 15 14 13 25 25 C 1.52999 * 109.54877 * 182.22567 * 12 11 10 26 26 C 1.47149 * 120.99342 * 179.97438 * 8 6 5 27 27 H 1.09008 * 109.47504 * 300.00300 * 1 2 3 28 28 H 1.09002 * 109.47362 * 60.00397 * 1 2 3 29 29 H 1.09002 * 109.47325 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46970 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46714 * 300.00000 * 3 2 1 32 32 H 1.08992 * 109.47263 * 59.99892 * 3 2 1 33 33 H 1.09002 * 109.46988 * 300.00276 * 4 2 1 34 34 H 1.09002 * 109.47101 * 59.99610 * 4 2 1 35 35 H 1.08997 * 109.47067 * 180.02562 * 4 2 1 36 36 H 1.08994 * 109.68916 * 249.10678 * 9 8 6 37 37 H 1.09007 * 109.67928 * 9.67074 * 9 8 6 38 38 H 1.08998 * 109.51173 * 172.27788 * 10 9 8 39 39 H 1.09005 * 109.51524 * 292.38219 * 10 9 8 40 40 H 1.09006 * 109.48402 * 180.99735 * 13 12 11 41 41 H 1.08991 * 109.51177 * 60.93914 * 13 12 11 42 42 H 1.09000 * 109.58085 * 185.64434 * 14 13 12 43 43 H 1.08999 * 109.70030 * 65.29021 * 14 13 12 44 44 H 0.96998 * 119.99676 * 5.78285 * 19 18 16 45 45 H 1.09008 * 109.58706 * 65.84446 * 24 15 14 46 46 H 1.08998 * 109.59128 * 186.27686 * 24 15 14 47 47 H 1.08997 * 109.49447 * 178.99766 * 25 12 11 48 48 H 1.09001 * 109.49212 * 299.05162 * 25 12 11 49 49 H 1.09005 * 109.67843 * 110.76276 * 26 8 6 50 50 H 1.08996 * 109.70440 * 350.24439 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6843 1.1856 6 6 1.6522 -1.9721 1.3384 7 8 0.9516 -2.5096 0.5036 8 7 2.0680 -2.6656 2.4167 9 6 2.9174 -2.0365 3.4407 10 6 2.2903 -2.2967 4.8151 11 8 2.0490 -3.6979 4.9648 12 6 1.1214 -4.2369 4.0209 13 6 -0.2093 -3.4894 4.1265 14 6 -0.7585 -3.6294 5.5497 15 7 -0.8391 -5.0572 5.8872 16 6 -2.0126 -5.6035 6.3340 17 1 -2.9573 -5.1860 6.0187 18 6 -1.9879 -6.6942 7.1923 19 7 -0.9325 -6.9133 7.9478 20 14 -3.4522 -7.8510 7.2752 21 1 -3.1780 -8.9268 8.2614 22 1 -4.6588 -7.0929 7.6932 23 1 -3.6842 -8.4524 5.9374 24 6 0.3653 -5.8860 5.7418 25 6 0.9007 -5.7228 4.3112 26 6 1.6852 -4.0738 2.6058 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6766 -1.7489 -1.2492 34 1 1.6766 -0.2075 -2.1392 35 1 3.1300 -0.7216 -1.2489 36 1 3.9170 -2.4695 3.4052 37 1 2.9751 -0.9629 3.2608 38 1 2.9718 -1.9593 5.5960 39 1 1.3484 -1.7539 4.8943 40 1 -0.9215 -3.9131 3.4184 41 1 -0.0535 -2.4349 3.8988 42 1 -1.7522 -3.1846 5.6032 43 1 -0.0941 -3.1250 6.2513 44 1 -0.2080 -6.2687 7.9677 45 1 1.1210 -5.5610 6.4570 46 1 0.1138 -6.9311 5.9224 47 1 0.1796 -6.1288 3.6018 48 1 1.8462 -6.2566 4.2144 49 1 2.5607 -4.7116 2.4841 50 1 0.9257 -4.3496 1.8742 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933461260.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:26 Heat of formation + Delta-G solvation = -97.420509 kcal Electronic energy + Delta-G solvation = -30561.280150 eV Core-core repulsion = 26589.631041 eV Total energy + Delta-G solvation = -3971.649110 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.12469 -39.85451 -37.30675 -36.32614 -34.86116 -33.94469 -33.12671 -31.19286 -29.83090 -28.78873 -27.66077 -27.58737 -26.93731 -24.29637 -23.53056 -22.45746 -22.12652 -20.56576 -19.36512 -18.98585 -18.06549 -17.42164 -16.85163 -16.39116 -15.63940 -15.46940 -15.23696 -14.84271 -14.66667 -14.32951 -14.11163 -13.80210 -13.66989 -13.64878 -13.43526 -13.34397 -12.79719 -12.45777 -12.42042 -12.16777 -12.12233 -11.98538 -11.83993 -11.74672 -11.67311 -11.49933 -11.46987 -10.93595 -10.67948 -10.55788 -10.50684 -10.42832 -10.29568 -10.15145 -9.99102 -9.89558 -9.50825 -9.23721 -8.53403 -8.32316 -6.81268 -6.01302 -3.19343 1.97322 2.75342 3.52449 3.55596 3.63351 3.73794 3.92114 4.47701 4.52063 4.63316 4.66417 4.72167 4.88373 5.00756 5.04349 5.20423 5.22461 5.25491 5.29222 5.29929 5.38584 5.43493 5.51048 5.55708 5.60400 5.63101 5.64336 5.73067 5.73430 5.81269 5.93964 6.06390 6.10725 6.17781 6.22766 6.24766 6.30852 6.38860 6.44569 6.51038 6.68361 6.88473 7.08315 7.25142 7.29497 7.47137 8.06221 8.23774 8.63492 9.17865 9.89998 10.36454 11.26638 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.023292 B = 0.003165 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.832897 B = 8844.013727 C = 9267.350337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.364 6.364 6 C 0.655 3.345 7 O -0.567 6.567 8 N -0.594 5.594 9 C 0.079 3.921 10 C 0.043 3.957 11 O -0.358 6.358 12 C 0.117 3.883 13 C -0.152 4.152 14 C 0.155 3.845 15 N -0.598 5.598 16 C -0.350 4.350 17 H 0.054 0.946 18 C -0.024 4.024 19 N -0.916 5.916 20 Si 1.064 2.936 21 H -0.286 1.286 22 H -0.294 1.294 23 H -0.293 1.293 24 C 0.159 3.841 25 C -0.121 4.121 26 C 0.105 3.895 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.019 0.981 44 H 0.270 0.730 45 H 0.027 0.973 46 H 0.078 0.922 47 H 0.074 0.926 48 H 0.061 0.939 49 H 0.076 0.924 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.490 14.733 -15.004 23.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.240 4.240 5 O -0.279 6.279 6 C 0.410 3.590 7 O -0.457 6.457 8 N -0.334 5.334 9 C -0.044 4.044 10 C -0.034 4.034 11 O -0.276 6.276 12 C 0.077 3.923 13 C -0.191 4.191 14 C 0.028 3.972 15 N -0.322 5.322 16 C -0.479 4.479 17 H 0.071 0.929 18 C -0.226 4.226 19 N -0.556 5.556 20 Si 0.894 3.106 21 H -0.211 1.211 22 H -0.221 1.221 23 H -0.221 1.221 24 C 0.033 3.967 25 C -0.161 4.161 26 C -0.016 4.016 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.114 0.886 38 H 0.121 0.879 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.037 0.963 44 H 0.081 0.919 45 H 0.045 0.955 46 H 0.096 0.904 47 H 0.093 0.907 48 H 0.079 0.921 49 H 0.094 0.906 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.755 13.106 -14.482 21.404 hybrid contribution 0.475 1.840 -1.027 2.160 sum 9.230 14.946 -15.509 23.433 Atomic orbital electron populations 1.22520 0.93926 1.05242 1.02433 1.22058 0.94453 0.91446 0.82166 1.21853 1.02123 0.92599 1.03117 1.22510 1.01403 1.03611 0.96466 1.86272 1.71590 1.23714 1.46342 1.17908 0.78713 0.80441 0.81969 1.90889 1.41303 1.70395 1.43094 1.46958 1.52855 1.12431 1.21178 1.22453 0.94230 0.99323 0.88402 1.22928 1.00486 0.84486 0.95544 1.88059 1.63044 1.21274 1.55250 1.21766 0.88473 0.96031 0.86009 1.22508 0.96494 0.98679 1.01459 1.20760 0.97820 0.87235 0.91372 1.44105 1.08788 1.02373 1.76886 1.19963 0.84942 1.17006 1.25979 0.92853 1.25853 1.03481 1.00583 0.92674 1.70771 1.10194 1.39956 1.34672 0.83538 0.74644 0.76487 0.75922 1.21109 1.22073 1.22053 1.20928 0.88053 0.97006 0.90687 1.22157 1.00685 0.90888 1.02363 1.22513 1.01379 0.78598 0.99118 0.92137 0.91208 0.89279 0.91556 0.90189 0.91454 0.89346 0.91205 0.92300 0.90586 0.88569 0.87932 0.92250 0.91257 0.92989 0.92998 0.96301 0.91912 0.95483 0.90369 0.90695 0.92053 0.90624 0.87964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.94 8.37 37.16 0.31 -1.63 16 2 C 0.14 1.39 1.13 -90.62 -0.10 1.29 16 3 C -0.14 -1.02 8.85 37.16 0.33 -0.69 16 4 C -0.18 -1.80 8.37 37.16 0.31 -1.49 16 5 O -0.36 -4.55 8.58 -40.31 -0.35 -4.89 16 6 C 0.65 9.47 7.75 54.05 0.42 9.89 16 7 O -0.57 -9.30 11.35 -19.28 -0.22 -9.52 16 8 N -0.59 -8.18 2.52 -178.12 -0.45 -8.63 16 9 C 0.08 0.90 6.65 -3.53 -0.02 0.88 16 10 C 0.04 0.56 6.60 37.31 0.25 0.81 16 11 O -0.36 -6.03 9.00 -35.23 -0.32 -6.35 16 12 C 0.12 1.99 0.68 -90.52 -0.06 1.93 16 13 C -0.15 -2.78 4.33 -26.64 -0.12 -2.89 16 14 C 0.15 3.36 6.28 -3.71 -0.02 3.34 16 15 N -0.60 -15.16 2.83 -172.05 -0.49 -15.65 16 16 C -0.35 -9.87 9.48 -15.06 -0.14 -10.01 16 17 H 0.05 1.52 7.94 -52.49 -0.42 1.10 16 18 C -0.02 -0.68 4.69 -17.43 -0.08 -0.76 16 19 N -0.92 -27.61 12.45 55.49 0.69 -26.92 16 20 Si 1.06 25.42 29.98 -169.99 -5.10 20.33 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 C 0.16 3.75 4.49 -3.48 -0.02 3.74 16 25 C -0.12 -2.28 5.12 -26.41 -0.14 -2.41 16 26 C 0.11 1.56 5.29 -3.58 -0.02 1.54 16 27 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 1.19 5.88 -51.93 -0.31 0.88 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 1.10 5.88 -51.93 -0.31 0.80 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.10 0.96 7.01 -51.93 -0.36 0.59 16 38 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 0.82 6.29 -51.93 -0.33 0.49 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.05 0.88 6.16 -51.93 -0.32 0.56 16 42 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 43 H 0.02 0.42 7.83 -51.93 -0.41 0.01 16 44 H 0.27 8.24 6.72 -40.82 -0.27 7.96 16 45 H 0.03 0.67 7.54 -51.92 -0.39 0.28 16 46 H 0.08 2.05 6.38 -51.93 -0.33 1.72 16 47 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 48 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 50 H 0.10 1.61 7.07 -51.93 -0.37 1.24 16 LS Contribution 374.59 15.07 5.65 5.65 Total: -1.00 -32.26 374.59 -8.19 -40.45 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -8.51 Total: 2.03 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 0.90 Total: 3.51 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: -0.25 Total: -51.20 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.88 Total: -20.76 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -5.10 Total: 20.33 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.26 -8.19 -40.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933461260.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.970 kcal (2) G-P(sol) polarization free energy of solvation -32.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds