Wall clock time and date at job start Tue Mar 31 2020 14:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.47049 * 2 1 4 4 C 1.52998 * 109.47300 * 239.99833 * 2 1 3 5 5 O 1.45196 * 109.47210 * 119.99375 * 2 1 3 6 6 C 1.34635 * 116.99746 * 60.00217 * 5 2 1 7 7 O 1.21516 * 119.99834 * 0.02562 * 6 5 2 8 8 N 1.34774 * 120.00564 * 179.97438 * 6 5 2 9 9 C 1.47161 * 120.98330 * 0.02562 * 8 6 5 10 10 C 1.53300 * 108.37118 * 129.38539 * 9 8 6 11 11 O 1.42968 * 109.22612 * 52.35397 * 10 9 8 12 12 C 1.42893 * 114.20887 * 297.50525 * 11 10 9 13 13 C 1.52990 * 109.55769 * 302.52586 * 12 11 10 14 14 C 1.53195 * 109.34738 * 300.95636 * 13 12 11 15 15 N 1.46932 * 108.77517 * 305.43150 * 14 13 12 16 16 C 1.36939 * 120.63776 * 233.64856 * 15 14 13 17 17 H 1.07994 * 120.00388 * 29.31573 * 16 15 14 18 18 C 1.38812 * 119.99894 * 209.31432 * 16 15 14 19 19 N 1.31629 * 119.99846 * 24.33934 * 18 16 15 20 20 Si 1.86794 * 120.00220 * 204.34404 * 18 16 15 21 21 H 1.48499 * 109.47166 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.47008 * 299.99540 * 20 18 16 23 23 H 1.48500 * 109.47268 * 59.99635 * 20 18 16 24 24 C 1.46925 * 118.71825 * 53.92877 * 15 14 13 25 25 C 1.52999 * 109.54877 * 182.22567 * 12 11 10 26 26 C 1.47149 * 120.99342 * 179.97438 * 8 6 5 27 27 H 1.09008 * 109.47504 * 300.00300 * 1 2 3 28 28 H 1.09002 * 109.47362 * 60.00397 * 1 2 3 29 29 H 1.09002 * 109.47325 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46970 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46714 * 300.00000 * 3 2 1 32 32 H 1.08992 * 109.47263 * 59.99892 * 3 2 1 33 33 H 1.09002 * 109.46988 * 300.00276 * 4 2 1 34 34 H 1.09002 * 109.47101 * 59.99610 * 4 2 1 35 35 H 1.08997 * 109.47067 * 180.02562 * 4 2 1 36 36 H 1.08994 * 109.68916 * 249.10678 * 9 8 6 37 37 H 1.09007 * 109.67928 * 9.67074 * 9 8 6 38 38 H 1.08998 * 109.51173 * 172.27788 * 10 9 8 39 39 H 1.09005 * 109.51524 * 292.38219 * 10 9 8 40 40 H 1.09006 * 109.48402 * 180.99735 * 13 12 11 41 41 H 1.08991 * 109.51177 * 60.93914 * 13 12 11 42 42 H 1.09000 * 109.58085 * 185.64434 * 14 13 12 43 43 H 1.08999 * 109.70030 * 65.29021 * 14 13 12 44 44 H 0.96998 * 119.99676 * 5.78285 * 19 18 16 45 45 H 1.09008 * 109.58706 * 65.84446 * 24 15 14 46 46 H 1.08998 * 109.59128 * 186.27686 * 24 15 14 47 47 H 1.08997 * 109.49447 * 178.99766 * 25 12 11 48 48 H 1.09001 * 109.49212 * 299.05162 * 25 12 11 49 49 H 1.09005 * 109.67843 * 110.76276 * 26 8 6 50 50 H 1.08996 * 109.70440 * 350.24439 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6843 1.1856 6 6 1.6522 -1.9721 1.3384 7 8 0.9516 -2.5096 0.5036 8 7 2.0680 -2.6656 2.4167 9 6 2.9174 -2.0365 3.4407 10 6 2.2903 -2.2967 4.8151 11 8 2.0490 -3.6979 4.9648 12 6 1.1214 -4.2369 4.0209 13 6 -0.2093 -3.4894 4.1265 14 6 -0.7585 -3.6294 5.5497 15 7 -0.8391 -5.0572 5.8872 16 6 -2.0126 -5.6035 6.3340 17 1 -2.9573 -5.1860 6.0187 18 6 -1.9879 -6.6942 7.1923 19 7 -0.9325 -6.9133 7.9478 20 14 -3.4522 -7.8510 7.2752 21 1 -3.1780 -8.9268 8.2614 22 1 -4.6588 -7.0929 7.6932 23 1 -3.6842 -8.4524 5.9374 24 6 0.3653 -5.8860 5.7418 25 6 0.9007 -5.7228 4.3112 26 6 1.6852 -4.0738 2.6058 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6766 -1.7489 -1.2492 34 1 1.6766 -0.2075 -2.1392 35 1 3.1300 -0.7216 -1.2489 36 1 3.9170 -2.4695 3.4052 37 1 2.9751 -0.9629 3.2608 38 1 2.9718 -1.9593 5.5960 39 1 1.3484 -1.7539 4.8943 40 1 -0.9215 -3.9131 3.4184 41 1 -0.0535 -2.4349 3.8988 42 1 -1.7522 -3.1846 5.6032 43 1 -0.0941 -3.1250 6.2513 44 1 -0.2080 -6.2687 7.9677 45 1 1.1210 -5.5610 6.4570 46 1 0.1138 -6.9311 5.9224 47 1 0.1796 -6.1288 3.6018 48 1 1.8462 -6.2566 4.2144 49 1 2.5607 -4.7116 2.4841 50 1 0.9257 -4.3496 1.8742 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933461260.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:25 Heat of formation + Delta-G solvation = -116.862910 kcal Electronic energy + Delta-G solvation = -30562.123236 eV Core-core repulsion = 26589.631041 eV Total energy + Delta-G solvation = -3972.492196 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.21491 -41.07171 -38.52493 -37.79990 -36.05353 -34.92477 -34.71842 -32.91782 -31.56135 -30.11966 -28.40164 -28.37786 -28.29185 -26.06730 -24.76839 -24.01193 -23.50640 -21.94620 -20.64299 -20.23798 -19.47521 -19.05852 -17.82300 -17.46133 -17.00255 -16.67926 -16.46676 -16.15279 -15.89376 -15.58401 -15.47754 -15.33567 -15.23948 -15.06452 -14.83267 -14.48951 -13.83027 -13.71513 -13.42161 -13.35883 -13.22145 -13.11786 -13.00468 -12.87751 -12.74129 -12.65430 -12.51455 -12.48979 -12.33941 -12.12881 -11.98640 -11.94970 -11.85970 -11.44684 -11.41386 -11.24196 -11.04675 -10.94822 -10.46733 -9.68318 -8.92354 -8.24051 -5.41735 0.97576 1.58474 1.65927 1.67269 1.85256 2.64513 2.68394 2.72949 3.22467 3.43250 3.61968 3.68787 3.73539 3.78273 3.78874 3.89161 3.93880 4.13501 4.18354 4.27576 4.31555 4.46149 4.53010 4.56289 4.57644 4.60518 4.65420 4.73045 4.75474 4.77652 4.80381 4.82868 4.84656 4.87627 4.92360 5.00539 5.08473 5.13976 5.16511 5.22551 5.27230 5.33986 5.41564 5.45518 5.83338 6.19636 6.23139 6.39734 7.06373 7.17946 7.77805 8.23505 8.99815 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.023292 B = 0.003165 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.832897 B = 8844.013727 C = 9267.350337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.124 3.876 3 C -0.134 4.134 4 C -0.178 4.178 5 O -0.363 6.363 6 C 0.652 3.348 7 O -0.591 6.591 8 N -0.597 5.597 9 C 0.084 3.916 10 C 0.038 3.962 11 O -0.378 6.378 12 C 0.125 3.875 13 C -0.136 4.136 14 C 0.155 3.845 15 N -0.616 5.616 16 C -0.360 4.360 17 H 0.046 0.954 18 C -0.072 4.072 19 N -0.940 5.940 20 Si 1.115 2.885 21 H -0.290 1.290 22 H -0.277 1.277 23 H -0.279 1.279 24 C 0.169 3.831 25 C -0.113 4.113 26 C 0.116 3.884 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.115 0.885 38 H 0.128 0.872 39 H 0.049 0.951 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.042 0.958 43 H 0.016 0.984 44 H 0.254 0.746 45 H 0.009 0.991 46 H 0.045 0.955 47 H 0.073 0.927 48 H 0.085 0.915 49 H 0.093 0.907 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.461 16.404 -16.640 25.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.088 3.912 3 C -0.191 4.191 4 C -0.236 4.236 5 O -0.277 6.277 6 C 0.407 3.593 7 O -0.482 6.482 8 N -0.337 5.337 9 C -0.038 4.038 10 C -0.039 4.039 11 O -0.297 6.297 12 C 0.085 3.915 13 C -0.176 4.176 14 C 0.029 3.971 15 N -0.340 5.340 16 C -0.489 4.489 17 H 0.064 0.936 18 C -0.269 4.269 19 N -0.581 5.581 20 Si 0.939 3.061 21 H -0.216 1.216 22 H -0.203 1.203 23 H -0.205 1.205 24 C 0.043 3.957 25 C -0.152 4.152 26 C -0.006 4.006 27 H 0.077 0.923 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.120 0.880 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.133 0.867 38 H 0.146 0.854 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.061 0.939 43 H 0.034 0.966 44 H 0.064 0.936 45 H 0.027 0.973 46 H 0.063 0.937 47 H 0.091 0.909 48 H 0.103 0.897 49 H 0.112 0.888 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.747 14.831 -16.139 23.988 hybrid contribution 0.186 1.444 -0.511 1.543 sum 9.933 16.275 -16.650 25.313 Atomic orbital electron populations 1.22486 0.94429 1.03438 1.03514 1.22443 0.94288 0.92913 0.81548 1.21874 1.02572 0.90288 1.04330 1.22460 1.01709 1.02071 0.97319 1.86285 1.71447 1.22536 1.47451 1.18040 0.78392 0.81006 0.81819 1.90891 1.42279 1.71048 1.44010 1.47010 1.53019 1.12062 1.21633 1.22563 0.94264 1.00452 0.86472 1.23178 1.00813 0.82274 0.97603 1.88032 1.62620 1.23548 1.55491 1.21531 0.88005 0.94356 0.87633 1.22301 0.97055 0.99839 0.98373 1.20809 0.97512 0.85299 0.93432 1.44341 1.08567 1.04030 1.77095 1.20204 0.85844 1.17306 1.25581 0.93584 1.27232 1.05254 1.02211 0.92219 1.70894 1.10792 1.39908 1.36509 0.82859 0.72193 0.74623 0.76384 1.21582 1.20326 1.20507 1.20714 0.87024 0.94637 0.93312 1.21997 1.01471 0.93073 0.98698 1.22251 1.01717 0.79851 0.96802 0.92267 0.88946 0.92409 0.90850 0.87956 0.91277 0.92277 0.89033 0.91699 0.88804 0.86712 0.85381 0.93290 0.92433 0.91461 0.93942 0.96627 0.93570 0.97288 0.93697 0.90851 0.89690 0.88848 0.89032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.57 8.37 71.98 0.60 -2.97 16 2 C 0.12 2.28 1.13 -10.79 -0.01 2.27 16 3 C -0.13 -1.50 8.85 71.99 0.64 -0.87 16 4 C -0.18 -3.19 8.37 71.98 0.60 -2.59 16 5 O -0.36 -8.32 8.58 -55.44 -0.48 -8.79 16 6 C 0.65 17.97 7.75 129.79 1.01 18.97 16 7 O -0.59 -19.19 11.35 19.79 0.22 -18.96 16 8 N -0.60 -15.29 2.52 -947.85 -2.39 -17.68 16 9 C 0.08 1.68 6.65 86.35 0.57 2.25 16 10 C 0.04 0.91 6.60 72.08 0.48 1.39 16 11 O -0.38 -12.25 9.00 -148.98 -1.34 -13.59 16 12 C 0.13 4.13 0.68 -10.73 -0.01 4.12 16 13 C -0.14 -4.97 4.33 30.66 0.13 -4.83 16 14 C 0.15 6.87 6.28 86.36 0.54 7.41 16 15 N -0.62 -32.11 2.83 -698.23 -1.97 -34.08 16 16 C -0.36 -20.80 9.48 84.03 0.80 -20.00 16 17 H 0.05 2.68 7.94 -2.91 -0.02 2.66 16 18 C -0.07 -4.21 4.69 84.86 0.40 -3.81 16 19 N -0.94 -58.29 12.45 21.65 0.27 -58.02 16 20 Si 1.12 51.83 29.98 68.60 2.06 53.89 16 21 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 22 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 23 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 24 C 0.17 8.19 4.49 86.51 0.39 8.58 16 25 C -0.11 -4.23 5.12 30.80 0.16 -4.07 16 26 C 0.12 3.25 5.29 86.32 0.46 3.70 16 27 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 28 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.06 1.53 5.88 -2.39 -0.01 1.52 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.10 0.71 8.14 -2.39 -0.02 0.70 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 1.44 5.88 -2.39 -0.01 1.42 16 34 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.11 1.89 7.01 -2.38 -0.02 1.87 16 38 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.05 1.27 6.29 -2.38 -0.02 1.25 16 40 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 41 H 0.07 2.24 6.16 -2.39 -0.01 2.22 16 42 H 0.04 1.91 7.93 -2.39 -0.02 1.89 16 43 H 0.02 0.71 7.83 -2.39 -0.02 0.69 16 44 H 0.25 16.18 6.72 -92.71 -0.62 15.55 16 45 H 0.01 0.47 7.54 -2.38 -0.02 0.45 16 46 H 0.04 2.45 6.38 -2.39 -0.02 2.43 16 47 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 48 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 49 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 50 H 0.09 2.80 7.07 -2.39 -0.02 2.78 16 Total: -1.00 -72.10 374.59 4.18 -67.93 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 1.06 Total: 19.75 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: 6.75 Total: 9.56 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -4.10 Total: -109.78 kcal Atomic # 8 Polarization: -39.75 SS G_CDS: -1.59 Total: -41.34 kcal Atomic # 14 Polarization: 51.83 SS G_CDS: 2.06 Total: 53.89 kcal Total: -72.10 4.18 -67.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933461260.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.937 kcal (2) G-P(sol) polarization free energy of solvation -72.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds