Wall clock time and date at job start Tue Mar 31 2020 14:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 O 1.45194 * 109.46979 * 239.99917 * 2 1 3 6 6 C 1.34637 * 117.00311 * 60.00565 * 5 2 1 7 7 O 1.21515 * 119.99443 * 359.97438 * 6 5 2 8 8 N 1.34771 * 120.00399 * 179.97438 * 6 5 2 9 9 C 1.46504 * 120.00294 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.46658 * 35.00485 * 9 8 6 11 11 C 1.52996 * 109.47252 * 275.00112 * 9 8 6 12 12 C 1.52993 * 109.47497 * 300.00073 * 11 9 8 13 13 C 1.52998 * 109.46917 * 299.99968 * 12 11 9 14 14 C 1.53001 * 109.47443 * 60.00001 * 13 12 11 15 15 C 1.52998 * 109.47126 * 155.00166 * 9 8 6 16 16 H 1.08998 * 109.46959 * 180.02562 * 15 9 8 17 17 C 1.50696 * 109.47135 * 300.00368 * 15 9 8 18 18 O 1.21287 * 120.00236 * 359.97438 * 17 15 9 19 19 N 1.34779 * 120.00102 * 180.02562 * 17 15 9 20 20 C 1.46503 * 120.00063 * 179.97438 * 19 17 15 21 21 C 1.50698 * 109.47369 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99493 * 0.02562 * 21 20 19 23 23 C 1.37867 * 120.00524 * 179.97438 * 21 20 19 24 24 N 1.31517 * 119.99922 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00458 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47117 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47414 * 120.00048 * 25 23 21 28 28 H 1.48506 * 109.47246 * 240.00230 * 25 23 21 29 29 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 32 32 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 33 33 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 35 35 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 36 36 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 37 37 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 38 38 H 0.97003 * 119.99930 * 359.97438 * 8 6 5 39 39 H 1.09008 * 109.47053 * 59.99924 * 11 9 8 40 40 H 1.09001 * 109.47408 * 179.97438 * 11 9 8 41 41 H 1.09003 * 109.47607 * 179.97438 * 12 11 9 42 42 H 1.08998 * 109.47390 * 59.99808 * 12 11 9 43 43 H 1.09000 * 109.47260 * 299.99651 * 13 12 11 44 44 H 1.09003 * 109.47452 * 179.97438 * 13 12 11 45 45 H 1.08991 * 109.47558 * 179.97438 * 14 13 12 46 46 H 1.09000 * 109.47178 * 59.99600 * 14 13 12 47 47 H 0.96992 * 119.99680 * 359.97438 * 19 17 15 48 48 H 1.09003 * 109.46950 * 300.00169 * 20 19 17 49 49 H 1.09000 * 109.47225 * 59.99670 * 20 19 17 50 50 H 0.97003 * 120.00248 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 2.0140 -0.6845 -1.1855 6 6 1.6524 -0.1729 -2.3772 7 8 0.9511 0.8183 -2.4252 8 7 2.0681 -0.7600 -3.5168 9 6 1.6741 -0.2036 -4.8136 10 1 1.6270 0.8831 -4.7434 11 6 0.2999 -0.7495 -5.2065 12 6 0.3661 -2.2748 -5.3050 13 6 1.3952 -2.6732 -6.3648 14 6 2.7695 -2.1274 -5.9719 15 6 2.7032 -0.6020 -5.8734 16 1 2.4103 -0.1876 -6.8380 17 6 4.0567 -0.0644 -5.4864 18 8 4.1856 0.5750 -4.4638 19 7 5.1240 -0.2931 -6.2771 20 6 6.4398 0.2300 -5.9011 21 6 7.4534 -0.1624 -6.9449 22 1 7.1479 -0.7431 -7.8028 23 6 8.7704 0.2206 -6.8053 24 7 9.1423 0.9281 -5.7609 25 14 10.0268 -0.2653 -8.0995 26 1 9.3591 -1.0541 -9.1659 27 1 10.6274 0.9577 -8.6901 28 1 11.0927 -1.0864 -7.4710 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 -1.7489 1.2493 36 1 3.1300 -0.7217 1.2491 37 1 1.6766 -0.2074 2.1393 38 1 2.6283 -1.5510 -3.4785 39 1 -0.4332 -0.4657 -4.4514 40 1 0.0066 -0.3352 -6.1711 41 1 -0.6130 -2.6638 -5.5845 42 1 0.6593 -2.6889 -4.3402 43 1 1.1021 -2.2593 -7.3296 44 1 1.4428 -3.7600 -6.4347 45 1 3.5027 -2.4116 -6.7266 46 1 3.0626 -2.5414 -5.0071 47 1 5.0208 -0.8041 -7.0950 48 1 6.3921 1.3168 -5.8308 49 1 6.7332 -0.1839 -4.9364 50 1 10.0690 1.1974 -5.6624 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935694555.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:49 Heat of formation + Delta-G solvation = -145.817519 kcal Electronic energy + Delta-G solvation = -29629.226723 eV Core-core repulsion = 25655.478962 eV Total energy + Delta-G solvation = -3973.747762 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.86569 -39.79337 -37.77471 -36.56863 -34.33268 -34.10588 -33.26038 -32.39182 -31.08839 -29.75626 -27.44763 -27.34240 -27.19881 -23.91541 -23.18406 -22.32248 -21.99770 -20.20279 -19.64620 -19.04939 -18.16734 -17.24705 -16.41443 -16.05627 -15.76992 -15.42321 -15.28202 -14.89580 -14.65842 -14.40506 -14.29861 -14.11606 -13.76820 -13.58204 -13.28737 -12.69220 -12.56312 -12.48063 -12.32166 -12.26263 -12.18035 -11.95766 -11.89993 -11.82962 -11.73576 -11.42936 -11.27439 -11.23481 -10.96798 -10.92030 -10.79033 -10.66911 -10.33258 -10.28266 -10.15383 -9.84873 -9.39460 -9.10047 -8.79077 -8.73743 -7.88774 -6.18275 -4.25360 2.36693 3.14335 3.21850 3.29038 3.31812 3.33201 3.98151 4.28350 4.33823 4.52835 4.70586 4.72000 4.75540 4.77708 4.90590 5.02538 5.11394 5.18049 5.28064 5.31503 5.40762 5.46676 5.51643 5.52132 5.57615 5.62013 5.64666 5.76420 5.79296 5.87832 5.91388 5.94855 5.96711 5.98447 6.09429 6.20481 6.22842 6.26706 6.39097 6.59357 6.73280 7.29228 7.42255 7.50366 7.63889 7.67728 7.95563 8.60887 8.64760 8.76489 9.08758 9.41581 10.91866 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.012645 B = 0.003322 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.814528 B = 8426.988602 C =10048.244535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.137 3.863 3 C -0.184 4.184 4 C -0.141 4.141 5 O -0.367 6.367 6 C 0.659 3.341 7 O -0.575 6.575 8 N -0.686 5.686 9 C 0.188 3.812 10 H 0.096 0.904 11 C -0.132 4.132 12 C -0.120 4.120 13 C -0.118 4.118 14 C -0.113 4.113 15 C -0.120 4.120 16 H 0.109 0.891 17 C 0.497 3.503 18 O -0.543 6.543 19 N -0.711 5.711 20 C 0.250 3.750 21 C -0.542 4.542 22 H 0.063 0.937 23 C 0.063 3.937 24 N -0.885 5.885 25 Si 0.903 3.097 26 H -0.272 1.272 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.401 0.599 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.076 0.924 46 H 0.065 0.935 47 H 0.389 0.611 48 H 0.026 0.974 49 H 0.026 0.974 50 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.258 -7.351 5.335 21.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.100 3.900 3 C -0.241 4.241 4 C -0.198 4.198 5 O -0.281 6.281 6 C 0.413 3.587 7 O -0.465 6.465 8 N -0.343 5.343 9 C 0.084 3.916 10 H 0.114 0.886 11 C -0.170 4.170 12 C -0.157 4.157 13 C -0.155 4.155 14 C -0.151 4.151 15 C -0.142 4.142 16 H 0.127 0.873 17 C 0.281 3.719 18 O -0.421 6.421 19 N -0.359 5.359 20 C 0.130 3.870 21 C -0.581 4.581 22 H 0.081 0.919 23 C -0.140 4.140 24 N -0.522 5.522 25 Si 0.730 3.270 26 H -0.196 1.196 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.107 0.893 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.237 0.763 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.095 0.905 46 H 0.084 0.916 47 H 0.222 0.778 48 H 0.044 0.956 49 H 0.044 0.956 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.305 -6.284 6.222 21.234 hybrid contribution 1.128 -0.705 -1.013 1.672 sum -18.177 -6.990 5.209 20.159 Atomic orbital electron populations 1.22505 0.94316 1.02549 1.04458 1.21985 0.94007 0.92366 0.81612 1.22507 1.01987 0.95265 1.04316 1.21853 1.02496 1.00834 0.94600 1.86290 1.71719 1.56339 1.13794 1.17921 0.78635 0.81210 0.80964 1.90844 1.42101 1.26588 1.86980 1.44521 1.54641 1.32335 1.02848 1.20579 0.91921 0.99515 0.79591 0.88562 1.21992 0.96906 0.95976 1.02167 1.21524 0.98982 0.95777 0.99428 1.21557 0.94355 1.00620 0.98974 1.21544 0.98059 0.92866 1.02606 1.21731 0.94196 0.97644 1.00597 0.87323 1.20319 0.85763 0.81229 0.84613 1.90714 1.85537 1.40598 1.25267 1.46462 1.10076 1.54619 1.24767 1.19086 0.76787 0.94830 0.96332 1.21251 0.93265 1.35791 1.07767 0.91899 1.24954 0.98441 0.94757 0.95888 1.69988 1.17772 1.36366 1.28095 0.86374 0.81083 0.78329 0.81192 1.19636 1.20804 1.20807 0.89320 0.92471 0.91454 0.91555 0.91939 0.89220 0.91697 0.91356 0.90373 0.76327 0.91058 0.90663 0.91983 0.91909 0.91529 0.91600 0.90522 0.91595 0.77809 0.95641 0.95633 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.04 8.37 37.16 0.31 -1.73 16 2 C 0.14 1.74 1.13 -90.62 -0.10 1.63 16 3 C -0.18 -2.45 8.37 37.16 0.31 -2.14 16 4 C -0.14 -1.38 8.85 37.16 0.33 -1.05 16 5 O -0.37 -5.61 9.94 -40.31 -0.40 -6.01 16 6 C 0.66 10.75 8.02 54.05 0.43 11.18 16 7 O -0.58 -10.18 11.54 -19.28 -0.22 -10.41 16 8 N -0.69 -10.04 3.03 -58.73 -0.18 -10.22 16 9 C 0.19 2.53 1.78 -67.93 -0.12 2.41 16 10 H 0.10 1.56 7.53 -51.93 -0.39 1.17 16 11 C -0.13 -1.37 5.60 -26.74 -0.15 -1.52 16 12 C -0.12 -1.06 5.77 -26.74 -0.15 -1.21 16 13 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 14 C -0.11 -1.19 4.93 -26.73 -0.13 -1.32 16 15 C -0.12 -1.55 2.32 -91.77 -0.21 -1.76 16 16 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 17 C 0.50 9.34 6.99 -10.99 -0.08 9.26 16 18 O -0.54 -12.62 15.20 5.55 0.08 -12.54 16 19 N -0.71 -14.28 5.44 -61.47 -0.33 -14.62 16 20 C 0.25 6.53 5.43 -5.19 -0.03 6.50 16 21 C -0.54 -14.50 9.28 -34.45 -0.32 -14.82 16 22 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 23 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 24 N -0.88 -26.00 13.29 55.43 0.74 -25.26 16 25 Si 0.90 20.69 29.54 -169.99 -5.02 15.66 16 26 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 29 H 0.09 1.19 5.88 -51.93 -0.31 0.89 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 1.43 5.88 -51.93 -0.31 1.13 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.40 5.60 6.98 -40.82 -0.28 5.32 16 39 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.60 7.60 -51.93 -0.39 0.21 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.79 7.57 -51.93 -0.39 0.39 16 46 H 0.07 0.74 6.51 -51.93 -0.34 0.40 16 47 H 0.39 6.67 7.74 -40.82 -0.32 6.35 16 48 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 49 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 391.25 15.07 5.90 5.90 Total: -1.00 -33.03 391.25 -8.21 -41.24 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -8.60 Total: 10.30 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -0.17 Total: 5.95 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: 0.22 Total: -50.10 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.54 Total: -28.95 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.03 -8.21 -41.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935694555.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.573 kcal (2) G-P(sol) polarization free energy of solvation -33.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds