Wall clock time and date at job start Tue Mar 31 2020 14:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 O 1.45194 * 109.46979 * 239.99917 * 2 1 3 6 6 C 1.34637 * 117.00311 * 60.00565 * 5 2 1 7 7 O 1.21515 * 119.99443 * 359.97438 * 6 5 2 8 8 N 1.34771 * 120.00399 * 179.97438 * 6 5 2 9 9 C 1.46504 * 120.00294 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.46658 * 35.00485 * 9 8 6 11 11 C 1.52996 * 109.47252 * 275.00112 * 9 8 6 12 12 C 1.52993 * 109.47497 * 300.00073 * 11 9 8 13 13 C 1.52998 * 109.46917 * 299.99968 * 12 11 9 14 14 C 1.53001 * 109.47443 * 60.00001 * 13 12 11 15 15 C 1.52998 * 109.47126 * 155.00166 * 9 8 6 16 16 H 1.08998 * 109.46959 * 180.02562 * 15 9 8 17 17 C 1.50696 * 109.47135 * 300.00368 * 15 9 8 18 18 O 1.21287 * 120.00236 * 359.97438 * 17 15 9 19 19 N 1.34779 * 120.00102 * 180.02562 * 17 15 9 20 20 C 1.46503 * 120.00063 * 179.97438 * 19 17 15 21 21 C 1.50698 * 109.47369 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99493 * 0.02562 * 21 20 19 23 23 C 1.37867 * 120.00524 * 179.97438 * 21 20 19 24 24 N 1.31517 * 119.99922 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00458 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47117 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47414 * 120.00048 * 25 23 21 28 28 H 1.48506 * 109.47246 * 240.00230 * 25 23 21 29 29 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 32 32 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 33 33 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 35 35 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 36 36 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 37 37 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 38 38 H 0.97003 * 119.99930 * 359.97438 * 8 6 5 39 39 H 1.09008 * 109.47053 * 59.99924 * 11 9 8 40 40 H 1.09001 * 109.47408 * 179.97438 * 11 9 8 41 41 H 1.09003 * 109.47607 * 179.97438 * 12 11 9 42 42 H 1.08998 * 109.47390 * 59.99808 * 12 11 9 43 43 H 1.09000 * 109.47260 * 299.99651 * 13 12 11 44 44 H 1.09003 * 109.47452 * 179.97438 * 13 12 11 45 45 H 1.08991 * 109.47558 * 179.97438 * 14 13 12 46 46 H 1.09000 * 109.47178 * 59.99600 * 14 13 12 47 47 H 0.96992 * 119.99680 * 359.97438 * 19 17 15 48 48 H 1.09003 * 109.46950 * 300.00169 * 20 19 17 49 49 H 1.09000 * 109.47225 * 59.99670 * 20 19 17 50 50 H 0.97003 * 120.00248 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 2.0140 -0.6845 -1.1855 6 6 1.6524 -0.1729 -2.3772 7 8 0.9511 0.8183 -2.4252 8 7 2.0681 -0.7600 -3.5168 9 6 1.6741 -0.2036 -4.8136 10 1 1.6270 0.8831 -4.7434 11 6 0.2999 -0.7495 -5.2065 12 6 0.3661 -2.2748 -5.3050 13 6 1.3952 -2.6732 -6.3648 14 6 2.7695 -2.1274 -5.9719 15 6 2.7032 -0.6020 -5.8734 16 1 2.4103 -0.1876 -6.8380 17 6 4.0567 -0.0644 -5.4864 18 8 4.1856 0.5750 -4.4638 19 7 5.1240 -0.2931 -6.2771 20 6 6.4398 0.2300 -5.9011 21 6 7.4534 -0.1624 -6.9449 22 1 7.1479 -0.7431 -7.8028 23 6 8.7704 0.2206 -6.8053 24 7 9.1423 0.9281 -5.7609 25 14 10.0268 -0.2653 -8.0995 26 1 9.3591 -1.0541 -9.1659 27 1 10.6274 0.9577 -8.6901 28 1 11.0927 -1.0864 -7.4710 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 -1.7489 1.2493 36 1 3.1300 -0.7217 1.2491 37 1 1.6766 -0.2074 2.1393 38 1 2.6283 -1.5510 -3.4785 39 1 -0.4332 -0.4657 -4.4514 40 1 0.0066 -0.3352 -6.1711 41 1 -0.6130 -2.6638 -5.5845 42 1 0.6593 -2.6889 -4.3402 43 1 1.1021 -2.2593 -7.3296 44 1 1.4428 -3.7600 -6.4347 45 1 3.5027 -2.4116 -6.7266 46 1 3.0626 -2.5414 -5.0071 47 1 5.0208 -0.8041 -7.0950 48 1 6.3921 1.3168 -5.8308 49 1 6.7332 -0.1839 -4.9364 50 1 10.0690 1.1974 -5.6624 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935694555.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:48 Heat of formation + Delta-G solvation = -168.340564 kcal Electronic energy + Delta-G solvation = -29630.203396 eV Core-core repulsion = 25655.478962 eV Total energy + Delta-G solvation = -3974.724434 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.06212 -41.07468 -39.15067 -37.69698 -36.16250 -35.30954 -34.51974 -34.14158 -32.21705 -30.73858 -29.15573 -28.37364 -28.29813 -25.44295 -24.20692 -23.87709 -23.02176 -21.47295 -21.04928 -20.11427 -19.36008 -18.91345 -17.63769 -17.52906 -17.16127 -17.00662 -16.42678 -16.37998 -15.95096 -15.70636 -15.51796 -15.25832 -14.91323 -14.77718 -14.49656 -14.13203 -13.97572 -13.62123 -13.56102 -13.39756 -13.18274 -13.11387 -13.03472 -12.88977 -12.85430 -12.84661 -12.75832 -12.50481 -12.29514 -12.22962 -12.18644 -11.68800 -11.46352 -11.42243 -11.36888 -11.06279 -11.04743 -10.82117 -10.63006 -10.03192 -9.79082 -8.29656 -6.46314 1.25420 1.42846 1.43816 1.57307 1.78349 1.89068 2.31051 2.56026 3.05556 3.20721 3.48226 3.73684 3.75955 3.80292 3.81771 3.94855 4.11729 4.20202 4.31578 4.39342 4.47388 4.52683 4.59614 4.61302 4.71022 4.74672 4.75040 4.83254 4.86534 4.95675 5.05889 5.08228 5.11587 5.15810 5.21736 5.23852 5.27351 5.29327 5.33611 5.39021 5.45344 5.49559 5.55733 5.64173 5.70188 5.85030 6.44984 6.65711 6.92719 7.23604 7.41946 7.52340 8.82704 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.012645 B = 0.003322 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.814528 B = 8426.988602 C =10048.244535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.123 3.877 3 C -0.180 4.180 4 C -0.135 4.135 5 O -0.378 6.378 6 C 0.650 3.350 7 O -0.595 6.595 8 N -0.683 5.683 9 C 0.185 3.815 10 H 0.061 0.939 11 C -0.121 4.121 12 C -0.116 4.116 13 C -0.108 4.108 14 C -0.110 4.110 15 C -0.102 4.102 16 H 0.141 0.859 17 C 0.494 3.506 18 O -0.593 6.593 19 N -0.704 5.704 20 C 0.268 3.732 21 C -0.552 4.552 22 H 0.086 0.914 23 C 0.002 3.998 24 N -0.933 5.933 25 Si 0.984 3.016 26 H -0.250 1.250 27 H -0.281 1.281 28 H -0.280 1.280 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.045 0.955 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.106 0.894 38 H 0.403 0.597 39 H 0.056 0.944 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.051 0.949 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.055 0.945 47 H 0.408 0.592 48 H -0.018 1.018 49 H -0.016 1.016 50 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.618 -9.793 3.515 23.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.086 3.914 3 C -0.238 4.238 4 C -0.192 4.192 5 O -0.293 6.293 6 C 0.404 3.596 7 O -0.487 6.487 8 N -0.341 5.341 9 C 0.081 3.919 10 H 0.079 0.921 11 C -0.160 4.160 12 C -0.153 4.153 13 C -0.145 4.145 14 C -0.148 4.148 15 C -0.123 4.123 16 H 0.158 0.842 17 C 0.281 3.719 18 O -0.474 6.474 19 N -0.353 5.353 20 C 0.145 3.855 21 C -0.590 4.590 22 H 0.104 0.896 23 C -0.197 4.197 24 N -0.571 5.571 25 Si 0.808 3.192 26 H -0.173 1.173 27 H -0.207 1.207 28 H -0.206 1.206 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.124 0.876 38 H 0.239 0.761 39 H 0.075 0.925 40 H 0.116 0.884 41 H 0.101 0.899 42 H 0.070 0.930 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.105 0.895 46 H 0.074 0.926 47 H 0.244 0.756 48 H 0.000 1.000 49 H 0.002 0.998 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.706 -8.767 4.367 22.906 hybrid contribution 1.529 0.134 -0.349 1.574 sum -19.177 -8.633 4.018 21.411 Atomic orbital electron populations 1.22418 0.93010 1.03161 1.04384 1.22413 0.95228 0.92010 0.81714 1.22472 1.00822 0.96270 1.04210 1.21883 1.01925 1.01482 0.93903 1.86297 1.71981 1.56794 1.14192 1.18166 0.78686 0.81172 0.81586 1.90828 1.43104 1.27424 1.87355 1.44632 1.54320 1.32156 1.03000 1.20684 0.94111 0.97759 0.79336 0.92121 1.21920 0.93907 0.97420 1.02713 1.21517 1.00394 0.94050 0.99362 1.21527 0.91979 1.01646 0.99355 1.21600 1.00347 0.90286 1.02614 1.21727 0.89508 0.99607 1.01502 0.84175 1.21413 0.87417 0.79782 0.83313 1.90700 1.86563 1.42652 1.27513 1.46162 1.08423 1.54899 1.25858 1.18481 0.79961 0.92094 0.94917 1.21647 0.93479 1.35685 1.08159 0.89613 1.26082 1.01056 0.94413 0.98197 1.70158 1.18457 1.37897 1.30632 0.85116 0.77781 0.78047 0.78301 1.17335 1.20660 1.20551 0.91922 0.91449 0.88912 0.88556 0.93625 0.92351 0.90646 0.92291 0.87557 0.76081 0.92491 0.88357 0.89892 0.92993 0.89576 0.89844 0.89522 0.92601 0.75587 1.00034 0.99778 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.79 8.37 71.98 0.60 -3.19 16 2 C 0.12 3.13 1.13 -10.79 -0.01 3.12 16 3 C -0.18 -5.05 8.37 71.98 0.60 -4.44 16 4 C -0.13 -2.49 8.85 71.98 0.64 -1.85 16 5 O -0.38 -12.08 9.94 -55.46 -0.55 -12.64 16 6 C 0.65 22.46 8.02 129.79 1.04 23.50 16 7 O -0.60 -22.53 11.54 19.79 0.23 -22.31 16 8 N -0.68 -20.88 3.03 -570.13 -1.73 -22.61 16 9 C 0.19 5.03 1.78 44.99 0.08 5.11 16 10 H 0.06 2.09 7.53 -2.39 -0.02 2.07 16 11 C -0.12 -2.33 5.60 30.59 0.17 -2.16 16 12 C -0.12 -1.71 5.77 30.59 0.18 -1.53 16 13 C -0.11 -1.36 5.92 30.59 0.18 -1.18 16 14 C -0.11 -2.07 4.93 30.60 0.15 -1.92 16 15 C -0.10 -2.54 2.32 -11.54 -0.03 -2.56 16 16 H 0.14 2.68 8.14 -2.39 -0.02 2.66 16 17 C 0.49 19.08 6.99 87.66 0.61 19.69 16 18 O -0.59 -29.40 15.20 -3.05 -0.05 -29.45 16 19 N -0.70 -28.70 5.44 -466.78 -2.54 -31.24 16 20 C 0.27 14.69 5.43 85.63 0.46 15.16 16 21 C -0.55 -29.69 9.28 25.60 0.24 -29.46 16 22 H 0.09 4.13 7.60 -2.91 -0.02 4.10 16 23 C 0.00 0.10 5.46 84.65 0.46 0.56 16 24 N -0.93 -56.63 13.29 21.44 0.28 -56.35 16 25 Si 0.98 42.08 29.54 68.60 2.03 44.10 16 26 H -0.25 -9.74 7.11 99.48 0.71 -9.04 16 27 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 28 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 29 H 0.06 1.73 5.88 -2.39 -0.01 1.72 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.06 2.01 5.88 -2.39 -0.01 1.99 16 35 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.40 11.71 6.98 -92.71 -0.65 11.06 16 39 H 0.06 1.28 8.14 -2.38 -0.02 1.27 16 40 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.08 0.95 8.14 -2.39 -0.02 0.94 16 42 H 0.05 0.90 7.60 -2.39 -0.02 0.88 16 43 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.09 1.50 7.57 -2.39 -0.02 1.48 16 46 H 0.06 1.18 6.51 -2.39 -0.02 1.16 16 47 H 0.41 13.44 7.74 -92.71 -0.72 12.72 16 48 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 49 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 50 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -78.29 391.25 2.63 -75.65 By element: Atomic # 1 Polarization: 36.39 SS G_CDS: -0.43 Total: 35.97 kcal Atomic # 6 Polarization: 13.48 SS G_CDS: 5.38 Total: 18.87 kcal Atomic # 7 Polarization: -106.22 SS G_CDS: -3.98 Total: -110.20 kcal Atomic # 8 Polarization: -64.02 SS G_CDS: -0.37 Total: -64.39 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Total: -78.29 2.63 -75.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935694555.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.686 kcal (2) G-P(sol) polarization free energy of solvation -78.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds