Wall clock time and date at job start Tue Mar 31 2020 14:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46989 * 2 1 4 4 C 1.53002 * 109.46943 * 240.00160 * 2 1 3 5 5 O 1.45196 * 109.47120 * 119.99853 * 2 1 3 6 6 C 1.34644 * 116.99750 * 60.00078 * 5 2 1 7 7 O 1.21507 * 119.99930 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99827 * 179.97438 * 6 5 2 9 9 C 1.46496 * 120.00258 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.46776 * 35.00022 * 9 8 6 11 11 C 1.52998 * 109.47234 * 275.00436 * 9 8 6 12 12 C 1.53006 * 109.47045 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.46938 * 59.99952 * 12 11 9 14 14 C 1.52998 * 109.47292 * 299.99897 * 13 12 11 15 15 H 1.08994 * 109.47090 * 299.99882 * 14 13 12 16 16 C 1.50699 * 109.46977 * 179.97438 * 14 13 12 17 17 O 1.21281 * 119.99952 * 239.99968 * 16 14 13 18 18 N 1.34774 * 119.99869 * 60.00273 * 16 14 13 19 19 C 1.46508 * 120.00050 * 179.97438 * 18 16 14 20 20 C 1.50696 * 109.46947 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00413 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99816 * 179.97438 * 20 19 18 23 23 N 1.31515 * 119.99772 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00109 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46824 * 60.00114 * 24 22 20 26 26 H 1.48497 * 109.47231 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47256 * 300.00610 * 24 22 20 28 28 C 1.52998 * 109.47246 * 155.00083 * 9 8 6 29 29 H 1.09004 * 109.47306 * 299.99804 * 1 2 3 30 30 H 1.09003 * 109.47378 * 60.00136 * 1 2 3 31 31 H 1.09006 * 109.47255 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47084 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46954 * 299.99569 * 3 2 1 34 34 H 1.08998 * 109.47592 * 60.00181 * 3 2 1 35 35 H 1.09005 * 109.46853 * 299.99576 * 4 2 1 36 36 H 1.08994 * 109.47198 * 59.99893 * 4 2 1 37 37 H 1.08999 * 109.46961 * 179.97438 * 4 2 1 38 38 H 0.96999 * 120.00047 * 0.02562 * 8 6 5 39 39 H 1.08994 * 109.47090 * 299.99793 * 11 9 8 40 40 H 1.09001 * 109.47093 * 59.99825 * 11 9 8 41 41 H 1.08994 * 109.47411 * 300.00090 * 12 11 9 42 42 H 1.09003 * 109.46589 * 179.97438 * 12 11 9 43 43 H 1.09002 * 109.47461 * 179.97438 * 13 12 11 44 44 H 1.09007 * 109.46959 * 60.00152 * 13 12 11 45 45 H 0.96999 * 120.00065 * 0.02562 * 18 16 14 46 46 H 1.08997 * 109.46997 * 300.00173 * 19 18 16 47 47 H 1.08994 * 109.47021 * 59.99893 * 19 18 16 48 48 H 0.97000 * 119.99955 * 179.97438 * 23 22 20 49 49 H 1.08997 * 109.47162 * 300.00499 * 28 9 8 50 50 H 1.09000 * 109.46632 * 60.00604 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9508 -2.5094 0.5040 8 7 2.0680 -2.6657 2.4166 9 6 1.6739 -4.0668 2.5832 10 1 1.6266 -4.5494 1.6070 11 6 0.2997 -4.1340 3.2524 12 6 -0.1121 -5.5974 3.4258 13 6 0.9169 -6.3165 4.3004 14 6 2.2911 -6.2493 3.6312 15 1 2.2437 -6.7316 2.6549 16 6 3.3046 -6.9571 4.4930 17 8 4.2619 -6.3508 4.9255 18 7 3.1473 -8.2638 4.7831 19 6 4.1330 -8.9521 5.6205 20 6 3.7279 -10.3935 5.7914 21 1 2.8267 -10.7604 5.3228 22 6 4.5084 -11.2442 6.5452 23 7 5.6061 -10.7976 7.1154 24 14 4.0060 -13.0308 6.7576 25 1 3.9404 -13.6880 5.4276 26 1 5.0057 -13.7288 7.6052 27 1 2.6727 -13.0961 7.4082 28 6 2.7030 -4.7855 3.4581 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6767 1.9564 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1392 37 1 3.1299 -0.7208 -1.2495 38 1 2.6275 -2.2368 3.0828 39 1 0.3470 -3.6514 4.2286 40 1 -0.4334 -3.6220 2.6291 41 1 -0.1595 -6.0797 2.4495 42 1 -1.0909 -5.6452 3.9030 43 1 0.6233 -7.3589 4.4244 44 1 0.9642 -5.8342 5.2769 45 1 2.3820 -8.7488 4.4369 46 1 5.1118 -8.9042 5.1434 47 1 4.1807 -8.4695 6.5967 48 1 6.1550 -11.3960 7.6460 49 1 3.6820 -4.7376 2.9813 50 1 2.7502 -4.3029 4.4343 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935694828.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:11 Heat of formation + Delta-G solvation = -153.011070 kcal Electronic energy + Delta-G solvation = -28249.615405 eV Core-core repulsion = 24275.555707 eV Total energy + Delta-G solvation = -3974.059698 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.03035 -39.77002 -38.15049 -36.78184 -34.68286 -34.22996 -33.88565 -32.33031 -30.99942 -29.53658 -27.72161 -27.66514 -27.20298 -24.02332 -23.45649 -22.13247 -21.76189 -20.50985 -20.07497 -19.37251 -18.25986 -17.42406 -16.71027 -16.29718 -15.95171 -15.43618 -15.11800 -15.04764 -14.71615 -14.64172 -14.55482 -14.11998 -14.03337 -13.73337 -13.42905 -12.89222 -12.81693 -12.63008 -12.52643 -12.40036 -12.20077 -12.18891 -11.96220 -11.78360 -11.75780 -11.60327 -11.38946 -11.25441 -11.01015 -10.88178 -10.72247 -10.71378 -10.62115 -10.51352 -10.31797 -10.18646 -9.42214 -9.32979 -8.95023 -8.74127 -7.89220 -6.17592 -4.24647 1.97505 2.68602 3.24491 3.29469 3.30811 3.34220 3.87070 4.05334 4.34200 4.41116 4.45497 4.59751 4.63754 4.73143 4.80452 4.98641 5.11883 5.14938 5.18501 5.22623 5.24338 5.29253 5.35339 5.37507 5.38651 5.47450 5.55276 5.55643 5.61722 5.67359 5.82153 5.89224 5.93678 5.99333 6.02729 6.05403 6.14327 6.22116 6.23696 6.36669 6.37524 7.27554 7.29452 7.42458 7.50541 7.65123 7.96174 8.22974 8.61618 8.76552 9.08757 9.42021 10.92506 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.032118 B = 0.001995 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.563295 B =14030.217533 C =14423.914605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.367 6.367 6 C 0.650 3.350 7 O -0.569 6.569 8 N -0.705 5.705 9 C 0.163 3.837 10 H 0.092 0.908 11 C -0.131 4.131 12 C -0.113 4.113 13 C -0.114 4.114 14 C -0.102 4.102 15 H 0.095 0.905 16 C 0.503 3.497 17 O -0.557 6.557 18 N -0.711 5.711 19 C 0.250 3.750 20 C -0.544 4.544 21 H 0.062 0.938 22 C 0.063 3.937 23 N -0.885 5.885 24 Si 0.904 3.096 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.275 1.275 28 C -0.105 4.105 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.406 0.594 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.390 0.610 46 H 0.026 0.974 47 H 0.026 0.974 48 H 0.266 0.734 49 H 0.078 0.922 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.053 21.153 -13.546 27.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.099 3.901 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.281 6.281 6 C 0.404 3.596 7 O -0.458 6.458 8 N -0.363 5.363 9 C 0.060 3.940 10 H 0.110 0.890 11 C -0.170 4.170 12 C -0.151 4.151 13 C -0.151 4.151 14 C -0.125 4.125 15 H 0.113 0.887 16 C 0.287 3.713 17 O -0.436 6.436 18 N -0.358 5.358 19 C 0.129 3.871 20 C -0.582 4.582 21 H 0.080 0.920 22 C -0.140 4.140 23 N -0.523 5.523 24 Si 0.731 3.269 25 H -0.201 1.201 26 H -0.211 1.211 27 H -0.201 1.201 28 C -0.143 4.143 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.241 0.759 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.223 0.777 46 H 0.044 0.956 47 H 0.044 0.956 48 H 0.076 0.924 49 H 0.097 0.903 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.529 21.304 -13.564 27.763 hybrid contribution -0.272 -1.033 0.280 1.105 sum -11.802 20.271 -13.284 26.957 Atomic orbital electron populations 1.22514 0.94024 1.05103 1.02377 1.22050 0.94334 0.91494 0.82182 1.21862 1.02314 0.92583 1.03055 1.22519 1.01618 1.03564 0.96392 1.86309 1.71640 1.23796 1.46395 1.18102 0.78844 0.80441 0.82246 1.90889 1.41190 1.70327 1.43442 1.44885 1.55221 1.12679 1.23494 1.21047 0.94146 0.78359 1.00467 0.88988 1.21977 0.96455 0.97493 1.01056 1.21480 0.98635 0.94564 1.00410 1.21583 0.92677 1.01634 0.99253 1.21253 0.95181 0.95845 1.00185 0.88687 1.20339 0.86485 0.82910 0.81559 1.90655 1.32421 1.66283 1.54280 1.46467 1.28261 1.09370 1.51739 1.19096 0.87320 0.90962 0.89740 1.21190 1.09768 0.94195 1.33084 0.91950 1.24957 0.94716 0.99233 0.95125 1.69963 1.13821 1.36148 1.32342 0.86471 0.78326 0.83855 0.78236 1.20072 1.21080 1.20063 1.21572 0.98214 0.93916 1.00613 0.92239 0.91230 0.89306 0.91440 0.90193 0.91493 0.89292 0.91223 0.92151 0.75892 0.91514 0.91430 0.91420 0.91251 0.90783 0.91144 0.77686 0.95597 0.95564 0.92392 0.90346 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 8.37 37.16 0.31 -1.23 16 2 C 0.14 1.20 1.13 -90.62 -0.10 1.09 16 3 C -0.14 -0.88 8.85 37.16 0.33 -0.55 16 4 C -0.18 -1.60 8.37 37.16 0.31 -1.29 16 5 O -0.37 -3.95 9.94 -40.34 -0.40 -4.35 16 6 C 0.65 7.66 8.02 54.06 0.43 8.09 16 7 O -0.57 -7.71 11.54 -19.28 -0.22 -7.94 16 8 N -0.70 -7.26 5.08 -58.73 -0.30 -7.56 16 9 C 0.16 1.72 2.45 -67.93 -0.17 1.56 16 10 H 0.09 1.07 7.58 -51.93 -0.39 0.67 16 11 C -0.13 -1.28 5.49 -26.73 -0.15 -1.43 16 12 C -0.11 -1.05 5.92 -26.73 -0.16 -1.20 16 13 C -0.11 -1.27 5.10 -26.73 -0.14 -1.41 16 14 C -0.10 -1.35 2.53 -91.75 -0.23 -1.59 16 15 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 16 C 0.50 9.56 7.15 -10.99 -0.08 9.48 16 17 O -0.56 -12.90 15.98 5.56 0.09 -12.81 16 18 N -0.71 -14.51 5.44 -61.47 -0.33 -14.84 16 19 C 0.25 6.53 5.43 -5.19 -0.03 6.50 16 20 C -0.54 -14.60 9.28 -34.44 -0.32 -14.92 16 21 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 22 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 23 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 24 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 27 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 28 C -0.10 -1.27 3.96 -26.71 -0.11 -1.38 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.95 5.88 -51.93 -0.31 0.64 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.98 5.88 -51.93 -0.31 0.68 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.41 3.56 8.71 -40.82 -0.36 3.21 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.81 7.57 -51.93 -0.39 0.42 16 44 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 45 H 0.39 6.82 7.74 -40.82 -0.32 6.50 16 46 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 49 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 50 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 LS Contribution 397.24 15.07 5.99 5.99 Total: -1.00 -32.64 397.24 -8.44 -41.08 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -8.79 Total: 6.57 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -0.19 Total: 3.38 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: 0.10 Total: -47.61 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.53 Total: -25.10 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.64 -8.44 -41.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935694828.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.935 kcal (2) G-P(sol) polarization free energy of solvation -32.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds