Wall clock time and date at job start Tue Mar 31 2020 14:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46989 * 2 1 4 4 C 1.53002 * 109.46943 * 240.00160 * 2 1 3 5 5 O 1.45196 * 109.47120 * 119.99853 * 2 1 3 6 6 C 1.34644 * 116.99750 * 60.00078 * 5 2 1 7 7 O 1.21507 * 119.99930 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99827 * 179.97438 * 6 5 2 9 9 C 1.46496 * 120.00258 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.46776 * 35.00022 * 9 8 6 11 11 C 1.52998 * 109.47234 * 275.00436 * 9 8 6 12 12 C 1.53006 * 109.47045 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.46938 * 59.99952 * 12 11 9 14 14 C 1.52998 * 109.47292 * 299.99897 * 13 12 11 15 15 H 1.08994 * 109.47090 * 299.99882 * 14 13 12 16 16 C 1.50699 * 109.46977 * 179.97438 * 14 13 12 17 17 O 1.21281 * 119.99952 * 239.99968 * 16 14 13 18 18 N 1.34774 * 119.99869 * 60.00273 * 16 14 13 19 19 C 1.46508 * 120.00050 * 179.97438 * 18 16 14 20 20 C 1.50696 * 109.46947 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00413 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99816 * 179.97438 * 20 19 18 23 23 N 1.31515 * 119.99772 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00109 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46824 * 60.00114 * 24 22 20 26 26 H 1.48497 * 109.47231 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47256 * 300.00610 * 24 22 20 28 28 C 1.52998 * 109.47246 * 155.00083 * 9 8 6 29 29 H 1.09004 * 109.47306 * 299.99804 * 1 2 3 30 30 H 1.09003 * 109.47378 * 60.00136 * 1 2 3 31 31 H 1.09006 * 109.47255 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47084 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46954 * 299.99569 * 3 2 1 34 34 H 1.08998 * 109.47592 * 60.00181 * 3 2 1 35 35 H 1.09005 * 109.46853 * 299.99576 * 4 2 1 36 36 H 1.08994 * 109.47198 * 59.99893 * 4 2 1 37 37 H 1.08999 * 109.46961 * 179.97438 * 4 2 1 38 38 H 0.96999 * 120.00047 * 0.02562 * 8 6 5 39 39 H 1.08994 * 109.47090 * 299.99793 * 11 9 8 40 40 H 1.09001 * 109.47093 * 59.99825 * 11 9 8 41 41 H 1.08994 * 109.47411 * 300.00090 * 12 11 9 42 42 H 1.09003 * 109.46589 * 179.97438 * 12 11 9 43 43 H 1.09002 * 109.47461 * 179.97438 * 13 12 11 44 44 H 1.09007 * 109.46959 * 60.00152 * 13 12 11 45 45 H 0.96999 * 120.00065 * 0.02562 * 18 16 14 46 46 H 1.08997 * 109.46997 * 300.00173 * 19 18 16 47 47 H 1.08994 * 109.47021 * 59.99893 * 19 18 16 48 48 H 0.97000 * 119.99955 * 179.97438 * 23 22 20 49 49 H 1.08997 * 109.47162 * 300.00499 * 28 9 8 50 50 H 1.09000 * 109.46632 * 60.00604 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9508 -2.5094 0.5040 8 7 2.0680 -2.6657 2.4166 9 6 1.6739 -4.0668 2.5832 10 1 1.6266 -4.5494 1.6070 11 6 0.2997 -4.1340 3.2524 12 6 -0.1121 -5.5974 3.4258 13 6 0.9169 -6.3165 4.3004 14 6 2.2911 -6.2493 3.6312 15 1 2.2437 -6.7316 2.6549 16 6 3.3046 -6.9571 4.4930 17 8 4.2619 -6.3508 4.9255 18 7 3.1473 -8.2638 4.7831 19 6 4.1330 -8.9521 5.6205 20 6 3.7279 -10.3935 5.7914 21 1 2.8267 -10.7604 5.3228 22 6 4.5084 -11.2442 6.5452 23 7 5.6061 -10.7976 7.1154 24 14 4.0060 -13.0308 6.7576 25 1 3.9404 -13.6880 5.4276 26 1 5.0057 -13.7288 7.6052 27 1 2.6727 -13.0961 7.4082 28 6 2.7030 -4.7855 3.4581 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6767 1.9564 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1392 37 1 3.1299 -0.7208 -1.2495 38 1 2.6275 -2.2368 3.0828 39 1 0.3470 -3.6514 4.2286 40 1 -0.4334 -3.6220 2.6291 41 1 -0.1595 -6.0797 2.4495 42 1 -1.0909 -5.6452 3.9030 43 1 0.6233 -7.3589 4.4244 44 1 0.9642 -5.8342 5.2769 45 1 2.3820 -8.7488 4.4369 46 1 5.1118 -8.9042 5.1434 47 1 4.1807 -8.4695 6.5967 48 1 6.1550 -11.3960 7.6460 49 1 3.6820 -4.7376 2.9813 50 1 2.7502 -4.3029 4.4343 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935694828.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:10 Heat of formation + Delta-G solvation = -175.609640 kcal Electronic energy + Delta-G solvation = -28250.595352 eV Core-core repulsion = 24275.555707 eV Total energy + Delta-G solvation = -3975.039645 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.89909 -41.06393 -39.30075 -37.74224 -36.14784 -35.57165 -34.72487 -34.25945 -32.05939 -30.54574 -29.11016 -28.33097 -28.27129 -25.47595 -24.50385 -23.61813 -22.70792 -21.40297 -21.26382 -20.60753 -19.12307 -18.97853 -17.85803 -17.36498 -17.14010 -17.03863 -16.56323 -16.22245 -15.92293 -15.65218 -15.43226 -15.40747 -14.99376 -14.78959 -14.48449 -14.26013 -13.95408 -13.84248 -13.59420 -13.38983 -13.30311 -13.10105 -12.90661 -12.88122 -12.83693 -12.67854 -12.53799 -12.36663 -12.30624 -12.21439 -12.18181 -11.65416 -11.63608 -11.50870 -11.47383 -11.34715 -11.04754 -10.78498 -10.62773 -10.14003 -9.80693 -8.28428 -6.44928 1.16996 1.43712 1.47533 1.55688 1.77690 1.78572 2.32803 2.58712 3.06343 3.13998 3.61296 3.73101 3.78075 3.80495 3.83062 3.97677 4.04788 4.18072 4.28058 4.38792 4.42499 4.45927 4.57816 4.64495 4.65285 4.74800 4.79379 4.86636 4.90473 4.92818 5.03489 5.09622 5.13151 5.14349 5.15710 5.25216 5.27162 5.28659 5.30928 5.31258 5.39528 5.49171 5.51201 5.60919 5.70689 5.85984 6.42371 6.66098 6.92266 7.24286 7.36321 7.50691 8.83389 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.032118 B = 0.001995 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.563295 B =14030.217533 C =14423.914605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.124 3.876 3 C -0.136 4.136 4 C -0.180 4.180 5 O -0.372 6.372 6 C 0.648 3.352 7 O -0.588 6.588 8 N -0.701 5.701 9 C 0.173 3.827 10 H 0.086 0.914 11 C -0.126 4.126 12 C -0.104 4.104 13 C -0.110 4.110 14 C -0.089 4.089 15 H 0.119 0.881 16 C 0.500 3.500 17 O -0.602 6.602 18 N -0.705 5.705 19 C 0.266 3.734 20 C -0.556 4.556 21 H 0.084 0.916 22 C 0.003 3.997 23 N -0.931 5.931 24 Si 0.984 3.016 25 H -0.263 1.263 26 H -0.287 1.287 27 H -0.261 1.261 28 C -0.098 4.098 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.058 0.942 38 H 0.413 0.587 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.062 0.938 45 H 0.408 0.592 46 H -0.014 1.014 47 H -0.012 1.012 48 H 0.268 0.732 49 H 0.064 0.936 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.445 21.170 -14.784 29.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.088 3.912 3 C -0.193 4.193 4 C -0.237 4.237 5 O -0.287 6.287 6 C 0.401 3.599 7 O -0.479 6.479 8 N -0.359 5.359 9 C 0.069 3.931 10 H 0.104 0.896 11 C -0.165 4.165 12 C -0.142 4.142 13 C -0.147 4.147 14 C -0.111 4.111 15 H 0.137 0.863 16 C 0.287 3.713 17 O -0.485 6.485 18 N -0.355 5.355 19 C 0.143 3.857 20 C -0.594 4.594 21 H 0.102 0.898 22 C -0.197 4.197 23 N -0.569 5.569 24 Si 0.807 3.193 25 H -0.187 1.187 26 H -0.212 1.212 27 H -0.186 1.186 28 C -0.136 4.136 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.121 0.879 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.077 0.923 38 H 0.249 0.751 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.080 0.920 45 H 0.244 0.756 46 H 0.004 0.996 47 H 0.005 0.995 48 H 0.077 0.923 49 H 0.082 0.918 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.962 21.344 -14.828 29.502 hybrid contribution 0.524 -0.937 0.641 1.250 sum -13.438 20.407 -14.186 28.254 Atomic orbital electron populations 1.22460 0.93743 1.03790 1.03536 1.22411 0.94754 0.92618 0.81457 1.21887 1.02318 0.90818 1.04321 1.22477 1.01469 1.02328 0.97454 1.86323 1.71691 1.23226 1.47442 1.18217 0.78705 0.80797 0.82163 1.90883 1.42085 1.70818 1.44131 1.44845 1.55130 1.12541 1.23413 1.20894 0.94090 0.78328 0.99738 0.89553 1.21934 0.95446 0.98082 1.00988 1.21439 0.98538 0.93643 1.00577 1.21589 0.91599 1.02477 0.99076 1.21238 0.94325 0.95638 0.99895 0.86345 1.21393 0.86757 0.82155 0.80979 1.90633 1.34713 1.67087 1.56028 1.46205 1.27852 1.10070 1.51346 1.18526 0.87153 0.91666 0.88345 1.21597 1.10479 0.94238 1.33070 0.89765 1.26070 0.94464 1.04605 0.94528 1.70132 1.15335 1.38150 1.33308 0.85216 0.78222 0.77207 0.78634 1.18721 1.21211 1.18585 1.21472 0.98115 0.93511 1.00521 0.91983 0.89165 0.91750 0.91463 0.87945 0.91201 0.91836 0.89088 0.92296 0.75081 0.91152 0.91673 0.90430 0.89500 0.89987 0.91953 0.75600 0.99638 0.99454 0.92296 0.91773 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.77 8.37 71.98 0.60 -2.17 16 2 C 0.12 2.02 1.13 -10.79 -0.01 2.01 16 3 C -0.14 -1.43 8.85 71.98 0.64 -0.79 16 4 C -0.18 -2.98 8.37 71.98 0.60 -2.38 16 5 O -0.37 -7.79 9.94 -55.54 -0.55 -8.34 16 6 C 0.65 15.02 8.02 129.79 1.04 16.06 16 7 O -0.59 -15.83 11.54 19.82 0.23 -15.60 16 8 N -0.70 -14.10 5.08 -570.13 -2.90 -17.00 16 9 C 0.17 3.49 2.45 44.99 0.11 3.60 16 10 H 0.09 1.90 7.58 -2.39 -0.02 1.88 16 11 C -0.13 -2.22 5.49 30.60 0.17 -2.05 16 12 C -0.10 -1.64 5.92 30.60 0.18 -1.46 16 13 C -0.11 -2.23 5.10 30.59 0.16 -2.08 16 14 C -0.09 -2.26 2.53 -11.52 -0.03 -2.29 16 15 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 16 C 0.50 19.30 7.15 87.66 0.63 19.93 16 17 O -0.60 -29.12 15.98 -3.03 -0.05 -29.17 16 18 N -0.71 -29.11 5.44 -466.79 -2.54 -31.65 16 19 C 0.27 14.50 5.43 85.63 0.46 14.96 16 20 C -0.56 -29.97 9.28 25.60 0.24 -29.74 16 21 H 0.08 4.07 7.60 -2.91 -0.02 4.05 16 22 C 0.00 0.16 5.46 84.66 0.46 0.63 16 23 N -0.93 -56.01 13.29 21.45 0.28 -55.73 16 24 Si 0.98 42.03 29.54 68.60 2.03 44.05 16 25 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 26 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 27 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 28 C -0.10 -2.35 3.96 30.61 0.12 -2.22 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 1.35 5.88 -2.38 -0.01 1.33 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 33 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.06 1.40 5.88 -2.38 -0.01 1.39 16 36 H 0.09 1.06 8.14 -2.39 -0.02 1.05 16 37 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.41 7.12 8.71 -92.71 -0.81 6.31 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.08 1.58 7.57 -2.39 -0.02 1.56 16 44 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 45 H 0.41 13.80 7.74 -92.71 -0.72 13.09 16 46 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 47 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 48 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 49 H 0.06 1.73 8.10 -2.39 -0.02 1.71 16 50 H 0.07 1.83 8.10 -2.39 -0.02 1.81 16 Total: -1.00 -73.82 397.24 1.28 -72.54 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: -0.59 Total: 28.90 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 5.37 Total: 12.01 kcal Atomic # 7 Polarization: -99.22 SS G_CDS: -5.15 Total: -104.38 kcal Atomic # 8 Polarization: -52.75 SS G_CDS: -0.37 Total: -53.12 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Total: -73.82 1.28 -72.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935694828.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.074 kcal (2) G-P(sol) polarization free energy of solvation -73.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds