Wall clock time and date at job start Tue Mar 31 2020 15:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.46819 * 2 1 4 4 H 1.09001 * 109.47140 * 305.43059 * 3 2 1 5 5 O 1.42896 * 109.47131 * 65.43183 * 3 2 1 6 6 C 1.42903 * 113.99991 * 243.95672 * 5 3 2 7 7 C 1.50697 * 109.46878 * 185.42924 * 3 2 1 8 8 O 1.21279 * 119.99899 * 254.96063 * 7 3 2 9 9 N 1.34781 * 120.00203 * 74.95861 * 7 3 2 10 10 C 1.47157 * 120.98676 * 355.25348 * 9 7 3 11 11 C 1.53289 * 108.37264 * 230.59760 * 10 9 7 12 12 O 1.42969 * 109.23367 * 307.64976 * 11 10 9 13 13 C 1.42892 * 114.20762 * 62.48222 * 12 11 10 14 14 C 1.52990 * 109.56146 * 57.48693 * 13 12 11 15 15 C 1.53190 * 109.35603 * 59.05065 * 14 13 12 16 16 N 1.46939 * 108.77579 * 54.57070 * 15 14 13 17 17 C 1.36930 * 120.64637 * 126.30341 * 16 15 14 18 18 H 1.08001 * 119.99741 * 333.68010 * 17 16 15 19 19 C 1.38804 * 120.00280 * 153.68947 * 17 16 15 20 20 N 1.31623 * 120.00002 * 340.35934 * 19 17 16 21 21 Si 1.86802 * 120.00388 * 160.35816 * 19 17 16 22 22 H 1.48494 * 109.47237 * 265.01523 * 21 19 17 23 23 H 1.48506 * 109.46884 * 25.01139 * 21 19 17 24 24 H 1.48499 * 109.47194 * 145.00833 * 21 19 17 25 25 C 1.46940 * 118.70718 * 306.57423 * 16 15 14 26 26 C 1.52754 * 109.00121 * 53.39088 * 25 16 15 27 27 C 1.47154 * 120.98894 * 175.25019 * 9 7 3 28 28 H 1.08995 * 109.47168 * 295.06636 * 1 2 3 29 29 H 1.09002 * 109.47020 * 55.06865 * 1 2 3 30 30 H 1.09004 * 109.46969 * 175.06582 * 1 2 3 31 31 H 1.09000 * 109.47352 * 240.00382 * 2 1 3 32 32 H 1.08997 * 109.47302 * 119.99736 * 2 1 3 33 33 H 1.09004 * 109.47045 * 299.52831 * 6 5 3 34 34 H 1.09000 * 109.47138 * 59.51848 * 6 5 3 35 35 H 1.08994 * 109.47485 * 179.52202 * 6 5 3 36 36 H 1.09000 * 109.68609 * 110.87413 * 10 9 7 37 37 H 1.09004 * 109.68305 * 350.31882 * 10 9 7 38 38 H 1.09006 * 109.51125 * 187.72429 * 11 10 9 39 39 H 1.08994 * 109.51598 * 67.57818 * 11 10 9 40 40 H 1.08996 * 109.49174 * 299.08452 * 14 13 12 41 41 H 1.08998 * 109.50825 * 179.02938 * 14 13 12 42 42 H 1.09007 * 109.58813 * 294.78533 * 15 14 13 43 43 H 1.08992 * 109.70476 * 174.42755 * 15 14 13 44 44 H 0.96997 * 120.00076 * 179.97438 * 20 19 17 45 45 H 1.08999 * 109.58177 * 173.22271 * 25 16 15 46 46 H 1.08998 * 109.58730 * 293.65021 * 25 16 15 47 47 H 1.09002 * 109.56003 * 185.58949 * 26 25 16 48 48 H 1.08997 * 109.38029 * 65.56659 * 26 25 16 49 49 H 1.08991 * 109.67470 * 9.79301 * 27 9 7 50 50 H 1.09001 * 109.67546 * 249.24829 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5994 1.9837 -0.8374 5 8 1.6706 2.0784 1.2253 6 6 0.7696 3.1755 1.0622 7 6 3.5409 1.4448 -0.1344 8 8 4.2358 1.6860 0.8299 9 7 4.1112 1.1785 -1.3263 10 6 3.2952 0.7817 -2.4848 11 6 3.8992 -0.4915 -3.0879 12 8 5.2915 -0.2809 -3.3352 13 6 6.0623 -0.0195 -2.1608 14 6 5.9027 -1.1784 -1.1749 15 6 6.3709 -2.4774 -1.8383 16 7 7.7419 -2.2888 -2.3322 17 6 8.7386 -3.1565 -1.9734 18 1 8.6705 -3.7027 -1.0442 19 6 9.8366 -3.3339 -2.8038 20 7 9.7627 -2.9960 -4.0738 21 14 11.4193 -4.0521 -2.1191 22 1 12.3362 -2.9500 -1.7321 23 1 11.1111 -4.8815 -0.9264 24 1 12.0686 -4.8958 -3.1544 25 6 8.0238 -1.1475 -3.2137 26 6 7.5367 0.1338 -2.5396 27 6 5.5683 1.2760 -1.5077 28 1 -0.3633 0.4354 0.9308 29 1 -0.3633 0.5884 -0.8425 30 1 -0.3633 -1.0239 -0.0884 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.2357 3.9390 0.4393 34 1 -0.1457 2.8261 0.5845 35 1 0.5315 3.5984 2.0382 36 1 3.3012 1.5788 -3.2283 37 1 2.2721 0.5863 -2.1636 38 1 3.3943 -0.7254 -4.0252 39 1 3.7747 -1.3195 -2.3901 40 1 4.8547 -1.2724 -0.8906 41 1 6.5046 -0.9862 -0.2867 42 1 5.7122 -2.7199 -2.6723 43 1 6.3531 -3.2888 -1.1107 44 1 10.5301 -3.1197 -4.6540 45 1 9.0970 -1.0798 -3.3919 46 1 7.5015 -1.2799 -4.1612 47 1 7.6505 0.9731 -3.2257 48 1 8.1260 0.3162 -1.6410 49 1 6.0508 1.4059 -0.5390 50 1 5.8020 2.1239 -2.1515 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949048167.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:58 Heat of formation + Delta-G solvation = -90.183658 kcal Electronic energy + Delta-G solvation = -30509.216699 eV Core-core repulsion = 26537.881403 eV Total energy + Delta-G solvation = -3971.335297 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.88277 -39.29637 -37.64972 -36.25015 -34.76096 -33.67983 -32.91355 -31.18559 -29.85579 -28.96252 -28.62763 -27.03643 -25.73002 -24.09583 -23.51777 -22.40882 -22.06027 -21.00859 -19.31462 -18.93159 -17.83171 -17.07935 -16.89833 -16.07768 -15.77307 -15.38547 -15.26576 -14.97458 -14.80723 -14.55800 -14.36049 -14.17353 -13.72112 -13.59833 -13.42007 -13.29691 -13.00745 -12.77276 -12.46097 -12.34614 -12.05574 -11.76789 -11.75777 -11.62671 -11.48256 -11.34994 -11.14622 -11.04466 -10.81294 -10.66241 -10.46768 -10.33713 -10.23952 -10.00553 -9.82400 -9.57825 -9.44637 -9.29015 -8.42755 -8.40324 -6.63478 -5.74451 -3.13927 2.47586 2.61209 3.41254 3.48647 3.49954 3.52688 3.96367 4.19319 4.45844 4.52751 4.54077 4.72733 4.79012 4.88185 4.93506 5.01987 5.04914 5.06785 5.15571 5.26751 5.31939 5.36635 5.37882 5.41540 5.51981 5.58279 5.66712 5.68182 5.73827 5.78338 5.88336 5.91806 6.05854 6.27709 6.29942 6.34505 6.53305 6.56987 6.68006 6.74015 6.76860 7.02583 7.26370 7.42441 7.55917 7.74893 7.84657 8.07914 8.48559 9.26059 9.90286 10.47436 11.34089 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.024499 B = 0.003107 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.643657 B = 9010.197247 C = 9088.744185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.137 4.137 3 C 0.076 3.924 4 H 0.085 0.915 5 O -0.356 6.356 6 C 0.027 3.973 7 C 0.504 3.496 8 O -0.519 6.519 9 N -0.610 5.610 10 C 0.065 3.935 11 C 0.044 3.956 12 O -0.355 6.355 13 C 0.118 3.882 14 C -0.152 4.152 15 C 0.153 3.847 16 N -0.591 5.591 17 C -0.252 4.252 18 H 0.065 0.935 19 C 0.002 3.998 20 N -0.900 5.900 21 Si 0.899 3.101 22 H -0.288 1.288 23 H -0.279 1.279 24 H -0.292 1.292 25 C 0.177 3.823 26 C -0.126 4.126 27 C 0.089 3.911 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.041 0.959 34 H 0.044 0.956 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.068 0.932 42 H 0.020 0.980 43 H 0.050 0.950 44 H 0.253 0.747 45 H 0.086 0.914 46 H 0.027 0.973 47 H 0.058 0.942 48 H 0.070 0.930 49 H 0.098 0.902 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.497 11.003 3.251 23.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.175 4.175 3 C 0.014 3.986 4 H 0.103 0.897 5 O -0.273 6.273 6 C -0.069 4.069 7 C 0.291 3.709 8 O -0.393 6.393 9 N -0.346 5.346 10 C -0.058 4.058 11 C -0.034 4.034 12 O -0.273 6.273 13 C 0.078 3.922 14 C -0.191 4.191 15 C 0.026 3.974 16 N -0.313 5.313 17 C -0.381 4.381 18 H 0.083 0.917 19 C -0.197 4.197 20 N -0.544 5.544 21 Si 0.730 3.270 22 H -0.215 1.215 23 H -0.204 1.204 24 H -0.219 1.219 25 C 0.052 3.948 26 C -0.166 4.166 27 C -0.033 4.033 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.120 0.880 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.038 0.962 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.104 0.896 46 H 0.045 0.955 47 H 0.077 0.923 48 H 0.089 0.911 49 H 0.117 0.883 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.844 11.036 3.674 23.002 hybrid contribution 0.484 -0.112 0.214 0.541 sum -19.361 10.924 3.889 22.567 Atomic orbital electron populations 1.21753 0.94460 1.02375 1.02093 1.21961 0.97231 0.94151 1.04148 1.22070 0.91765 0.95875 0.88852 0.89692 1.88046 1.64783 1.46888 1.27558 1.22944 0.92258 0.88771 1.02971 1.20827 0.90475 0.77107 0.82472 1.90712 1.64099 1.47488 1.37006 1.48138 1.08027 1.68475 1.09939 1.22655 0.95430 0.99052 0.88692 1.22890 0.84024 0.95133 1.01403 1.88083 1.17015 1.91304 1.30914 1.21768 0.92825 0.92106 0.85482 1.22513 0.99967 0.97876 0.98778 1.20763 0.87682 0.93133 0.95796 1.44045 1.03173 1.27526 1.56588 1.19205 0.98309 1.19525 1.01081 0.91709 1.24976 0.99963 1.00114 0.94627 1.70077 1.29505 1.51936 1.02903 0.86313 0.84083 0.78528 0.78123 1.21509 1.20442 1.21864 1.20590 1.00984 0.82334 0.90927 1.22131 0.91006 1.01844 1.01612 1.22493 0.79188 0.98823 1.02819 0.92014 0.92791 0.91851 0.89922 0.89984 0.93996 0.93727 0.89151 0.90494 0.89041 0.88025 0.92191 0.93091 0.91340 0.96171 0.93111 0.93716 0.89573 0.95469 0.92304 0.91123 0.88331 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.72 37.16 0.36 -0.62 16 2 C -0.14 -1.22 5.20 -26.73 -0.14 -1.36 16 3 C 0.08 0.79 1.80 -27.88 -0.05 0.74 16 4 H 0.09 0.66 6.89 -51.93 -0.36 0.30 16 5 O -0.36 -4.21 9.56 -54.68 -0.52 -4.73 16 6 C 0.03 0.21 10.70 101.05 1.08 1.29 16 7 C 0.50 7.16 7.02 -10.98 -0.08 7.08 16 8 O -0.52 -9.66 16.04 -13.90 -0.22 -9.88 16 9 N -0.61 -7.95 2.52 -172.30 -0.43 -8.38 16 10 C 0.06 0.64 5.86 -3.53 -0.02 0.62 16 11 C 0.04 0.52 6.60 37.31 0.25 0.77 16 12 O -0.35 -5.93 9.01 -35.23 -0.32 -6.24 16 13 C 0.12 2.02 0.68 -90.49 -0.06 1.96 16 14 C -0.15 -2.77 4.33 -26.64 -0.12 -2.88 16 15 C 0.15 3.29 6.29 -3.70 -0.02 3.26 16 16 N -0.59 -15.01 3.00 -172.57 -0.52 -15.53 16 17 C -0.25 -7.00 9.58 -15.07 -0.14 -7.15 16 18 H 0.07 1.79 7.90 -52.49 -0.41 1.37 16 19 C 0.00 0.05 4.86 -17.43 -0.08 -0.04 16 20 N -0.90 -26.33 11.26 55.49 0.62 -25.70 16 21 Si 0.90 21.94 29.60 -169.99 -5.03 16.91 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 C 0.18 4.28 5.08 -3.93 -0.02 4.26 16 26 C -0.13 -2.43 5.09 -26.86 -0.14 -2.57 16 27 C 0.09 1.34 5.31 -3.55 -0.02 1.32 16 28 H 0.06 0.43 7.97 -51.93 -0.41 0.02 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.66 5.98 -51.93 -0.31 0.35 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.04 0.25 8.10 -51.93 -0.42 -0.17 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.64 4.41 -51.93 -0.23 0.42 16 38 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.06 0.75 6.29 -51.93 -0.33 0.43 16 40 H 0.05 0.84 6.16 -51.93 -0.32 0.52 16 41 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 42 H 0.02 0.44 7.83 -51.92 -0.41 0.04 16 43 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 44 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.09 2.32 6.02 -51.93 -0.31 2.00 16 46 H 0.03 0.70 7.83 -51.93 -0.41 0.30 16 47 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 49 H 0.10 1.64 7.06 -51.93 -0.37 1.27 16 50 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 378.63 15.07 5.71 5.71 Total: -1.00 -33.95 378.63 -8.40 -42.35 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -8.48 Total: -1.18 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: 0.80 Total: 6.68 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: -0.33 Total: -49.61 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -1.06 Total: -20.86 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.95 -8.40 -42.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949048167.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.831 kcal (2) G-P(sol) polarization free energy of solvation -33.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds