Wall clock time and date at job start Tue Mar 31 2020 15:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.46819 * 2 1 4 4 H 1.09001 * 109.47140 * 305.43059 * 3 2 1 5 5 O 1.42896 * 109.47131 * 65.43183 * 3 2 1 6 6 C 1.42903 * 113.99991 * 243.95672 * 5 3 2 7 7 C 1.50697 * 109.46878 * 185.42924 * 3 2 1 8 8 O 1.21279 * 119.99899 * 254.96063 * 7 3 2 9 9 N 1.34781 * 120.00203 * 74.95861 * 7 3 2 10 10 C 1.47157 * 120.98676 * 355.25348 * 9 7 3 11 11 C 1.53289 * 108.37264 * 230.59760 * 10 9 7 12 12 O 1.42969 * 109.23367 * 307.64976 * 11 10 9 13 13 C 1.42892 * 114.20762 * 62.48222 * 12 11 10 14 14 C 1.52990 * 109.56146 * 57.48693 * 13 12 11 15 15 C 1.53190 * 109.35603 * 59.05065 * 14 13 12 16 16 N 1.46939 * 108.77579 * 54.57070 * 15 14 13 17 17 C 1.36930 * 120.64637 * 126.30341 * 16 15 14 18 18 H 1.08001 * 119.99741 * 333.68010 * 17 16 15 19 19 C 1.38804 * 120.00280 * 153.68947 * 17 16 15 20 20 N 1.31623 * 120.00002 * 340.35934 * 19 17 16 21 21 Si 1.86802 * 120.00388 * 160.35816 * 19 17 16 22 22 H 1.48494 * 109.47237 * 265.01523 * 21 19 17 23 23 H 1.48506 * 109.46884 * 25.01139 * 21 19 17 24 24 H 1.48499 * 109.47194 * 145.00833 * 21 19 17 25 25 C 1.46940 * 118.70718 * 306.57423 * 16 15 14 26 26 C 1.52754 * 109.00121 * 53.39088 * 25 16 15 27 27 C 1.47154 * 120.98894 * 175.25019 * 9 7 3 28 28 H 1.08995 * 109.47168 * 295.06636 * 1 2 3 29 29 H 1.09002 * 109.47020 * 55.06865 * 1 2 3 30 30 H 1.09004 * 109.46969 * 175.06582 * 1 2 3 31 31 H 1.09000 * 109.47352 * 240.00382 * 2 1 3 32 32 H 1.08997 * 109.47302 * 119.99736 * 2 1 3 33 33 H 1.09004 * 109.47045 * 299.52831 * 6 5 3 34 34 H 1.09000 * 109.47138 * 59.51848 * 6 5 3 35 35 H 1.08994 * 109.47485 * 179.52202 * 6 5 3 36 36 H 1.09000 * 109.68609 * 110.87413 * 10 9 7 37 37 H 1.09004 * 109.68305 * 350.31882 * 10 9 7 38 38 H 1.09006 * 109.51125 * 187.72429 * 11 10 9 39 39 H 1.08994 * 109.51598 * 67.57818 * 11 10 9 40 40 H 1.08996 * 109.49174 * 299.08452 * 14 13 12 41 41 H 1.08998 * 109.50825 * 179.02938 * 14 13 12 42 42 H 1.09007 * 109.58813 * 294.78533 * 15 14 13 43 43 H 1.08992 * 109.70476 * 174.42755 * 15 14 13 44 44 H 0.96997 * 120.00076 * 179.97438 * 20 19 17 45 45 H 1.08999 * 109.58177 * 173.22271 * 25 16 15 46 46 H 1.08998 * 109.58730 * 293.65021 * 25 16 15 47 47 H 1.09002 * 109.56003 * 185.58949 * 26 25 16 48 48 H 1.08997 * 109.38029 * 65.56659 * 26 25 16 49 49 H 1.08991 * 109.67470 * 9.79301 * 27 9 7 50 50 H 1.09001 * 109.67546 * 249.24829 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5994 1.9837 -0.8374 5 8 1.6706 2.0784 1.2253 6 6 0.7696 3.1755 1.0622 7 6 3.5409 1.4448 -0.1344 8 8 4.2358 1.6860 0.8299 9 7 4.1112 1.1785 -1.3263 10 6 3.2952 0.7817 -2.4848 11 6 3.8992 -0.4915 -3.0879 12 8 5.2915 -0.2809 -3.3352 13 6 6.0623 -0.0195 -2.1608 14 6 5.9027 -1.1784 -1.1749 15 6 6.3709 -2.4774 -1.8383 16 7 7.7419 -2.2888 -2.3322 17 6 8.7386 -3.1565 -1.9734 18 1 8.6705 -3.7027 -1.0442 19 6 9.8366 -3.3339 -2.8038 20 7 9.7627 -2.9960 -4.0738 21 14 11.4193 -4.0521 -2.1191 22 1 12.3362 -2.9500 -1.7321 23 1 11.1111 -4.8815 -0.9264 24 1 12.0686 -4.8958 -3.1544 25 6 8.0238 -1.1475 -3.2137 26 6 7.5367 0.1338 -2.5396 27 6 5.5683 1.2760 -1.5077 28 1 -0.3633 0.4354 0.9308 29 1 -0.3633 0.5884 -0.8425 30 1 -0.3633 -1.0239 -0.0884 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.2357 3.9390 0.4393 34 1 -0.1457 2.8261 0.5845 35 1 0.5315 3.5984 2.0382 36 1 3.3012 1.5788 -3.2283 37 1 2.2721 0.5863 -2.1636 38 1 3.3943 -0.7254 -4.0252 39 1 3.7747 -1.3195 -2.3901 40 1 4.8547 -1.2724 -0.8906 41 1 6.5046 -0.9862 -0.2867 42 1 5.7122 -2.7199 -2.6723 43 1 6.3531 -3.2888 -1.1107 44 1 10.5301 -3.1197 -4.6540 45 1 9.0970 -1.0798 -3.3919 46 1 7.5015 -1.2799 -4.1612 47 1 7.6505 0.9731 -3.2257 48 1 8.1260 0.3162 -1.6410 49 1 6.0508 1.4059 -0.5390 50 1 5.8020 2.1239 -2.1515 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949048167.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:57 Heat of formation + Delta-G solvation = -112.256157 kcal Electronic energy + Delta-G solvation = -30510.173835 eV Core-core repulsion = 26537.881403 eV Total energy + Delta-G solvation = -3972.292432 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.00135 -40.44557 -38.61341 -37.82134 -35.95080 -34.75671 -34.26185 -32.89449 -31.57499 -30.12227 -29.63546 -28.09490 -26.81197 -25.61866 -24.72228 -23.83411 -23.10624 -22.41721 -20.68722 -20.13709 -18.95027 -18.62674 -17.96364 -17.06787 -16.93246 -16.76670 -16.54287 -16.20466 -16.03014 -15.86076 -15.43565 -15.22465 -15.16760 -14.97028 -14.86208 -14.45830 -14.28276 -13.81946 -13.47530 -13.29363 -13.22802 -13.14806 -13.06606 -12.93794 -12.72794 -12.64090 -12.38074 -12.29574 -12.25337 -12.09367 -11.88023 -11.79484 -11.73214 -11.50105 -11.36949 -11.07304 -10.83412 -10.53028 -10.36507 -9.56335 -8.69885 -7.88010 -5.30762 1.43651 1.45668 1.47675 1.56632 1.64978 2.50695 2.78297 2.82270 3.25447 3.32924 3.57896 3.72995 3.78048 3.79290 3.83985 3.90647 3.99574 4.14074 4.27362 4.27830 4.39643 4.41474 4.42587 4.50680 4.56454 4.60978 4.67068 4.68310 4.72120 4.81830 4.85289 4.89562 4.92038 4.96238 5.03386 5.08109 5.11149 5.16189 5.24985 5.31536 5.39607 5.45537 5.63888 5.78092 6.01188 6.29996 6.34253 6.37703 7.03759 7.14384 7.85854 8.38217 9.18524 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.024499 B = 0.003107 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.643657 B = 9010.197247 C = 9088.744185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.135 4.135 3 C 0.081 3.919 4 H 0.121 0.879 5 O -0.388 6.388 6 C 0.020 3.980 7 C 0.498 3.502 8 O -0.574 6.574 9 N -0.607 5.607 10 C 0.068 3.932 11 C 0.033 3.967 12 O -0.377 6.377 13 C 0.128 3.872 14 C -0.138 4.138 15 C 0.153 3.847 16 N -0.609 5.609 17 C -0.266 4.266 18 H 0.062 0.938 19 C -0.047 4.047 20 N -0.930 5.930 21 Si 0.964 3.036 22 H -0.286 1.286 23 H -0.270 1.270 24 H -0.293 1.293 25 C 0.189 3.811 26 C -0.119 4.119 27 C 0.097 3.903 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.055 0.945 33 H 0.045 0.955 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.053 0.947 40 H 0.071 0.929 41 H 0.051 0.949 42 H 0.019 0.981 43 H 0.046 0.954 44 H 0.251 0.749 45 H 0.052 0.948 46 H 0.003 0.997 47 H 0.078 0.922 48 H 0.065 0.935 49 H 0.078 0.922 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.186 11.938 2.883 26.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.173 4.173 3 C 0.020 3.980 4 H 0.139 0.861 5 O -0.306 6.306 6 C -0.076 4.076 7 C 0.287 3.713 8 O -0.452 6.452 9 N -0.342 5.342 10 C -0.054 4.054 11 C -0.044 4.044 12 O -0.296 6.296 13 C 0.088 3.912 14 C -0.177 4.177 15 C 0.028 3.972 16 N -0.332 5.332 17 C -0.396 4.396 18 H 0.080 0.920 19 C -0.243 4.243 20 N -0.576 5.576 21 Si 0.793 3.207 22 H -0.213 1.213 23 H -0.195 1.195 24 H -0.219 1.219 25 C 0.063 3.937 26 C -0.158 4.158 27 C -0.026 4.026 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.112 0.888 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.070 0.930 42 H 0.037 0.963 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.071 0.929 46 H 0.021 0.979 47 H 0.097 0.903 48 H 0.084 0.916 49 H 0.097 0.903 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -22.586 11.973 3.297 25.775 hybrid contribution 1.241 -0.434 0.298 1.348 sum -21.345 11.539 3.595 24.529 Atomic orbital electron populations 1.21734 0.92338 1.03306 1.02801 1.21974 0.98975 0.92889 1.03449 1.22184 0.88827 0.97218 0.89792 0.86135 1.88017 1.65772 1.48129 1.28680 1.23167 0.92603 0.87960 1.03867 1.21681 0.92131 0.75754 0.81743 1.90685 1.65615 1.50034 1.38860 1.48234 1.07315 1.67867 1.10806 1.22881 0.96231 0.98453 0.87816 1.23235 0.81867 0.96162 1.03093 1.88049 1.19531 1.91540 1.30526 1.21465 0.91723 0.92567 0.85493 1.22320 1.00557 0.96722 0.98099 1.20831 0.85927 0.94841 0.95615 1.44300 1.04360 1.27772 1.56807 1.19488 0.99404 1.19738 1.00989 0.91994 1.25711 1.02717 1.01052 0.94837 1.70216 1.30070 1.53325 1.03969 0.85298 0.80138 0.77775 0.77533 1.21276 1.19513 1.21927 1.20311 0.98659 0.84281 0.90408 1.21946 0.92864 0.99741 1.01291 1.22194 0.80835 0.97879 1.01705 0.92645 0.90446 0.91149 0.88802 0.92588 0.93586 0.91136 0.88632 0.88359 0.85566 0.85183 0.92861 0.91096 0.93031 0.96280 0.93586 0.94024 0.92943 0.97917 0.90310 0.91640 0.90336 0.89476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.72 71.98 0.70 -0.67 16 2 C -0.14 -2.02 5.20 30.60 0.16 -1.86 16 3 C 0.08 1.47 1.80 29.85 0.05 1.52 16 4 H 0.12 1.28 6.89 -2.39 -0.02 1.26 16 5 O -0.39 -8.51 9.56 -130.38 -1.25 -9.76 16 6 C 0.02 0.25 10.70 113.37 1.21 1.46 16 7 C 0.50 13.37 7.02 87.66 0.62 13.98 16 8 O -0.57 -21.49 16.04 15.57 0.25 -21.24 16 9 N -0.61 -14.42 2.52 -817.43 -2.06 -16.48 16 10 C 0.07 1.05 5.86 86.35 0.51 1.55 16 11 C 0.03 0.70 6.60 72.08 0.48 1.17 16 12 O -0.38 -11.99 9.01 -148.98 -1.34 -13.34 16 13 C 0.13 4.28 0.68 -10.71 -0.01 4.27 16 14 C -0.14 -5.01 4.33 30.65 0.13 -4.88 16 15 C 0.15 6.69 6.29 86.36 0.54 7.24 16 16 N -0.61 -31.81 3.00 -699.89 -2.10 -33.91 16 17 C -0.27 -15.18 9.58 84.03 0.81 -14.38 16 18 H 0.06 3.49 7.90 -2.91 -0.02 3.47 16 19 C -0.05 -2.71 4.86 84.86 0.41 -2.30 16 20 N -0.93 -55.99 11.26 21.65 0.24 -55.75 16 21 Si 0.96 45.95 29.60 68.60 2.03 47.98 16 22 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 23 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 25 C 0.19 9.41 5.08 86.21 0.44 9.85 16 26 C -0.12 -4.63 5.09 30.51 0.16 -4.47 16 27 C 0.10 2.81 5.31 86.34 0.46 3.27 16 28 H 0.05 0.61 7.97 -2.39 -0.02 0.60 16 29 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.09 1.15 5.98 -2.39 -0.01 1.14 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 34 H 0.07 0.51 8.10 -2.39 -0.02 0.49 16 35 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.13 1.10 4.41 -2.38 -0.01 1.08 16 38 H 0.13 2.01 8.14 -2.38 -0.02 1.99 16 39 H 0.05 1.19 6.29 -2.39 -0.02 1.18 16 40 H 0.07 2.28 6.16 -2.39 -0.01 2.27 16 41 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.02 0.84 7.83 -2.38 -0.02 0.82 16 43 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 44 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 45 H 0.05 2.94 6.02 -2.39 -0.01 2.93 16 46 H 0.00 0.15 7.83 -2.39 -0.02 0.13 16 47 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 48 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 49 H 0.08 2.62 7.06 -2.39 -0.02 2.61 16 50 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -77.59 378.63 3.35 -74.24 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 0.92 Total: 12.50 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: 6.66 Total: 15.76 kcal Atomic # 7 Polarization: -102.23 SS G_CDS: -3.92 Total: -106.15 kcal Atomic # 8 Polarization: -41.99 SS G_CDS: -2.34 Total: -44.33 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -77.59 3.35 -74.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949048167.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.018 kcal (2) G-P(sol) polarization free energy of solvation -77.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds