Wall clock time and date at job start Tue Mar 31 2020 15:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46944 * 2 1 4 4 H 1.09000 * 109.52160 * 54.92083 * 3 2 1 5 5 C 1.53191 * 109.49978 * 294.83808 * 3 2 1 6 6 N 1.46920 * 108.77616 * 185.41207 * 5 3 2 7 7 C 1.34777 * 120.63240 * 233.63310 * 6 5 3 8 8 O 1.21285 * 120.00109 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00163 * 180.02562 * 7 6 5 10 10 C 1.53000 * 109.47019 * 180.02562 * 9 7 6 11 11 O 1.42972 * 109.46807 * 294.99500 * 10 9 7 12 12 C 1.43092 * 113.76721 * 181.20912 * 11 10 9 13 13 C 1.53254 * 108.94496 * 57.97058 * 12 11 10 14 14 C 1.53256 * 108.84799 * 305.47405 * 13 12 11 15 15 O 1.42969 * 109.47092 * 175.00073 * 10 9 7 16 16 C 1.46928 * 118.73706 * 53.61307 * 6 5 3 17 17 C 1.53184 * 108.77408 * 306.38660 * 16 6 5 18 18 C 1.53039 * 109.31381 * 54.63954 * 17 16 6 19 19 H 1.09003 * 109.45459 * 178.62011 * 18 17 16 20 20 N 1.46502 * 109.46009 * 58.65178 * 18 17 16 21 21 C 1.36930 * 120.00159 * 84.93455 * 20 18 17 22 22 H 1.08000 * 119.99841 * 0.02562 * 21 20 18 23 23 C 1.38810 * 120.00182 * 179.97438 * 21 20 18 24 24 N 1.31622 * 119.99887 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00212 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47297 * 89.99941 * 25 23 21 27 27 H 1.48503 * 109.47261 * 330.00122 * 25 23 21 28 28 H 1.48500 * 109.47454 * 210.00115 * 25 23 21 29 29 H 1.09002 * 109.47317 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47473 * 299.99525 * 1 2 3 31 31 H 1.09006 * 109.47343 * 60.00012 * 1 2 3 32 32 H 1.09005 * 109.47064 * 240.00606 * 2 1 3 33 33 H 1.08992 * 109.47831 * 120.00199 * 2 1 3 34 34 H 1.08999 * 109.58873 * 305.20441 * 5 3 2 35 35 H 1.09000 * 109.58114 * 65.48250 * 5 3 2 36 36 H 1.08998 * 109.46740 * 299.99406 * 9 7 6 37 37 H 1.08997 * 109.46916 * 59.99867 * 9 7 6 38 38 H 1.09000 * 109.47721 * 54.99717 * 10 9 7 39 39 H 1.09002 * 109.55755 * 298.13145 * 12 11 10 40 40 H 1.09005 * 109.64470 * 177.86347 * 12 11 10 41 41 H 1.09008 * 109.57814 * 185.66596 * 13 12 11 42 42 H 1.09000 * 109.68399 * 65.34857 * 13 12 11 43 43 H 1.09002 * 109.56054 * 294.69014 * 14 13 12 44 44 H 1.09005 * 109.65290 * 174.40993 * 14 13 12 45 45 H 1.09002 * 109.58595 * 66.17799 * 16 6 5 46 46 H 1.09006 * 109.58324 * 186.45689 * 16 6 5 47 47 H 1.09003 * 109.50550 * 294.68732 * 17 16 6 48 48 H 1.09000 * 109.49658 * 174.58754 * 17 16 6 49 49 H 0.97008 * 119.99482 * 264.93511 * 20 18 17 50 50 H 0.96993 * 120.00105 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6046 1.9828 0.8407 5 6 1.6385 2.1269 -1.3105 6 7 2.2449 3.4644 -1.3506 7 6 1.4855 4.5566 -1.5671 8 8 0.2894 4.4407 -1.7315 9 6 2.1225 5.9218 -1.6060 10 6 1.0473 6.9791 -1.8646 11 8 0.4908 6.7842 -3.1671 12 6 -0.5103 7.7452 -3.5162 13 6 0.0979 9.1495 -3.4340 14 6 0.7075 9.3443 -2.0415 15 8 1.6313 8.2817 -1.7860 16 6 3.6951 3.5889 -1.1498 17 6 4.0735 2.8883 0.1588 18 6 3.5652 1.4451 0.1257 19 1 3.8546 0.9371 1.0457 20 7 4.1507 0.7477 -1.0219 21 6 5.3884 0.1720 -0.9146 22 1 5.9329 0.2318 0.0162 23 6 5.9430 -0.4893 -2.0018 24 7 5.2792 -0.5626 -3.1360 25 14 7.6318 -1.2740 -1.8557 26 1 7.4872 -2.6774 -1.3918 27 1 8.4491 -0.5114 -0.8781 28 1 8.3019 -1.2573 -3.1808 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.9963 1.5378 -2.1549 35 1 0.5530 2.2138 -1.3596 36 1 2.6077 6.1236 -0.6511 37 1 2.8639 5.9541 -2.4044 38 1 0.2604 6.8879 -1.1159 39 1 -1.3472 7.6688 -2.8221 40 1 -0.8599 7.5577 -4.5315 41 1 -0.6802 9.8948 -3.5996 42 1 0.8746 9.2581 -4.1911 43 1 -0.0833 9.3284 -1.2915 44 1 1.2302 10.2999 -2.0006 45 1 4.2207 3.1190 -1.9812 46 1 3.9672 4.6430 -1.0944 47 1 3.6191 3.4148 0.9981 48 1 5.1576 2.8895 0.2718 49 1 3.6614 0.6937 -1.8578 50 1 4.4024 -0.1549 -3.2121 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037833262.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:52 Heat of formation + Delta-G solvation = -125.087727 kcal Electronic energy + Delta-G solvation = -29700.445029 eV Core-core repulsion = 25727.596178 eV Total energy + Delta-G solvation = -3972.848851 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.47186 -39.72813 -37.85560 -35.81693 -34.52778 -33.99840 -33.35926 -31.78856 -30.55285 -29.28765 -28.22080 -26.20765 -25.28363 -23.88307 -23.48329 -23.19422 -21.39365 -20.88956 -19.60899 -18.43001 -17.70286 -17.35707 -16.95076 -16.57822 -16.13364 -15.68474 -15.19313 -15.01820 -14.95272 -14.85804 -14.26917 -13.75053 -13.68202 -13.52276 -13.50611 -13.34697 -13.06683 -12.93189 -12.76940 -12.24239 -12.11781 -11.80141 -11.77433 -11.52788 -11.33136 -11.30061 -11.17173 -10.91830 -10.69713 -10.56713 -10.32427 -10.23043 -10.20451 -10.00908 -9.86673 -9.83957 -9.56690 -9.15902 -8.92224 -8.26804 -7.03769 -6.10024 -3.10482 2.80674 2.93390 3.49274 3.51084 3.55125 3.60759 3.69220 4.43233 4.44747 4.61349 4.66189 4.69378 4.79897 4.93911 5.04927 5.09125 5.11771 5.20395 5.28214 5.31338 5.40382 5.45823 5.48526 5.54006 5.58037 5.61856 5.64079 5.72140 5.74276 5.75602 5.85034 5.99369 6.08633 6.13419 6.27210 6.32000 6.35405 6.49645 6.57294 6.62294 6.63526 6.70795 6.84370 6.94908 7.00209 7.66513 7.81035 8.35773 8.74685 9.21315 10.07769 10.23351 11.37700 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.015707 B = 0.003120 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.205815 B = 8973.119726 C = 9891.762303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.105 4.105 4 H 0.067 0.933 5 C 0.121 3.879 6 N -0.602 5.602 7 C 0.521 3.479 8 O -0.544 6.544 9 C -0.127 4.127 10 C 0.266 3.734 11 O -0.376 6.376 12 C 0.058 3.942 13 C -0.194 4.194 14 C 0.059 3.941 15 O -0.395 6.395 16 C 0.112 3.888 17 C -0.150 4.150 18 C 0.184 3.816 19 H 0.051 0.949 20 N -0.730 5.730 21 C -0.328 4.328 22 H 0.064 0.936 23 C -0.044 4.044 24 N -0.944 5.944 25 Si 1.080 2.920 26 H -0.297 1.297 27 H -0.296 1.296 28 H -0.289 1.289 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.053 0.947 44 H 0.099 0.901 45 H 0.082 0.918 46 H 0.072 0.928 47 H 0.049 0.951 48 H 0.075 0.925 49 H 0.367 0.633 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.399 17.127 4.723 20.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.125 4.125 4 H 0.086 0.914 5 C -0.001 4.001 6 N -0.334 5.334 7 C 0.308 3.692 8 O -0.422 6.422 9 C -0.167 4.167 10 C 0.170 3.830 11 O -0.296 6.296 12 C -0.019 4.019 13 C -0.232 4.232 14 C -0.017 4.017 15 O -0.316 6.316 16 C -0.010 4.010 17 C -0.191 4.191 18 C 0.074 3.926 19 H 0.069 0.931 20 N -0.374 5.374 21 C -0.459 4.459 22 H 0.082 0.918 23 C -0.242 4.242 24 N -0.589 5.589 25 Si 0.912 3.088 26 H -0.225 1.225 27 H -0.222 1.222 28 H -0.215 1.215 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.132 0.868 37 H 0.128 0.872 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.116 0.884 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.071 0.929 44 H 0.117 0.883 45 H 0.100 0.900 46 H 0.090 0.910 47 H 0.068 0.932 48 H 0.094 0.906 49 H 0.201 0.799 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.463 16.056 3.929 19.047 hybrid contribution -1.452 1.136 0.707 1.974 sum -10.915 17.192 4.636 20.885 Atomic orbital electron populations 1.21853 0.96681 1.01105 1.01411 1.21402 0.94386 0.95718 1.03190 1.21780 0.97425 0.96128 0.97134 0.91440 1.21634 0.98909 0.81628 0.97954 1.48078 1.08706 1.06438 1.70194 1.20062 0.86852 0.85635 0.76614 1.90678 1.14803 1.86566 1.50105 1.21487 0.98609 0.91036 1.05577 1.22884 0.92286 0.82263 0.85521 1.88207 1.55026 1.51850 1.34473 1.22597 0.90200 0.87204 1.01855 1.22813 1.02309 0.98867 0.99181 1.22625 0.93101 0.90902 0.95083 1.88067 1.37827 1.15109 1.90641 1.21751 0.79091 1.00239 0.99928 1.22511 1.01929 0.99182 0.95446 1.20148 0.89525 0.90585 0.92331 0.93085 1.42486 1.19429 1.65158 1.10281 1.20032 0.94660 1.31601 0.99609 0.91831 1.25686 1.05562 1.00192 0.92737 1.70861 1.14500 1.47662 1.25877 0.83223 0.74784 0.75704 0.75132 1.22466 1.22240 1.21517 0.93098 0.93292 0.92774 0.90915 0.91954 0.91337 0.89449 0.86766 0.87222 0.91873 0.92867 0.88383 0.89811 0.89956 0.92854 0.88281 0.89986 0.90958 0.93194 0.90637 0.79862 0.93446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.67 37.15 0.36 -1.73 16 2 C -0.11 -1.74 5.19 -26.73 -0.14 -1.88 16 3 C -0.10 -1.70 2.14 -90.50 -0.19 -1.89 16 4 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 5 C 0.12 2.05 5.03 -3.71 -0.02 2.03 16 6 N -0.60 -9.71 2.97 -172.77 -0.51 -10.22 16 7 C 0.52 8.37 7.58 -10.98 -0.08 8.28 16 8 O -0.54 -10.22 14.84 -8.89 -0.13 -10.35 16 9 C -0.13 -1.65 4.13 -27.88 -0.12 -1.76 16 10 C 0.27 3.49 2.80 37.16 0.10 3.59 16 11 O -0.38 -5.42 9.77 -64.76 -0.63 -6.05 16 12 C 0.06 0.60 6.96 37.29 0.26 0.86 16 13 C -0.19 -1.57 6.35 -26.47 -0.17 -1.73 16 14 C 0.06 0.51 6.96 37.29 0.26 0.77 16 15 O -0.40 -4.75 10.54 -59.03 -0.62 -5.37 16 16 C 0.11 1.76 6.08 -3.71 -0.02 1.74 16 17 C -0.15 -2.44 5.78 -26.62 -0.15 -2.59 16 18 C 0.18 3.42 2.53 -67.89 -0.17 3.25 16 19 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 20 N -0.73 -16.67 3.72 -53.38 -0.20 -16.87 16 21 C -0.33 -8.63 9.93 -15.06 -0.15 -8.78 16 22 H 0.06 1.67 7.83 -52.49 -0.41 1.25 16 23 C -0.04 -1.23 5.50 -17.43 -0.10 -1.32 16 24 N -0.94 -28.25 13.70 55.49 0.76 -27.49 16 25 Si 1.08 25.34 29.92 -169.99 -5.09 20.26 16 26 H -0.30 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.30 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.75 6.70 -51.93 -0.35 0.40 16 32 H 0.07 1.35 7.70 -51.93 -0.40 0.95 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.28 6.64 -51.93 -0.34 0.94 16 35 H 0.09 1.49 5.73 -51.93 -0.30 1.20 16 36 H 0.11 1.23 7.69 -51.93 -0.40 0.83 16 37 H 0.11 1.39 7.94 -51.93 -0.41 0.98 16 38 H 0.06 0.83 7.96 -51.93 -0.41 0.42 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.08 0.47 8.14 -51.92 -0.42 0.04 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.08 1.53 7.74 -51.93 -0.40 1.13 16 46 H 0.07 0.92 5.93 -51.93 -0.31 0.62 16 47 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 49 H 0.37 8.82 4.77 -40.82 -0.19 8.62 16 50 H 0.25 7.52 6.77 -40.82 -0.28 7.24 16 LS Contribution 382.58 15.07 5.77 5.77 Total: -1.00 -32.08 382.58 -9.48 -41.57 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -8.50 Total: 9.94 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -0.33 Total: -1.17 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: 0.05 Total: -54.58 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -1.39 Total: -21.77 kcal Atomic # 14 Polarization: 25.34 SS G_CDS: -5.09 Total: 20.26 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.08 -9.48 -41.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037833262.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.521 kcal (2) G-P(sol) polarization free energy of solvation -32.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds