Wall clock time and date at job start Tue Mar 31 2020 15:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46944 * 2 1 4 4 H 1.09000 * 109.52160 * 54.92083 * 3 2 1 5 5 C 1.53191 * 109.49978 * 294.83808 * 3 2 1 6 6 N 1.46920 * 108.77616 * 185.41207 * 5 3 2 7 7 C 1.34777 * 120.63240 * 233.63310 * 6 5 3 8 8 O 1.21285 * 120.00109 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00163 * 180.02562 * 7 6 5 10 10 C 1.53000 * 109.47019 * 180.02562 * 9 7 6 11 11 O 1.42972 * 109.46807 * 294.99500 * 10 9 7 12 12 C 1.43092 * 113.76721 * 181.20912 * 11 10 9 13 13 C 1.53254 * 108.94496 * 57.97058 * 12 11 10 14 14 C 1.53256 * 108.84799 * 305.47405 * 13 12 11 15 15 O 1.42969 * 109.47092 * 175.00073 * 10 9 7 16 16 C 1.46928 * 118.73706 * 53.61307 * 6 5 3 17 17 C 1.53184 * 108.77408 * 306.38660 * 16 6 5 18 18 C 1.53039 * 109.31381 * 54.63954 * 17 16 6 19 19 H 1.09003 * 109.45459 * 178.62011 * 18 17 16 20 20 N 1.46502 * 109.46009 * 58.65178 * 18 17 16 21 21 C 1.36930 * 120.00159 * 84.93455 * 20 18 17 22 22 H 1.08000 * 119.99841 * 0.02562 * 21 20 18 23 23 C 1.38810 * 120.00182 * 179.97438 * 21 20 18 24 24 N 1.31622 * 119.99887 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00212 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47297 * 89.99941 * 25 23 21 27 27 H 1.48503 * 109.47261 * 330.00122 * 25 23 21 28 28 H 1.48500 * 109.47454 * 210.00115 * 25 23 21 29 29 H 1.09002 * 109.47317 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47473 * 299.99525 * 1 2 3 31 31 H 1.09006 * 109.47343 * 60.00012 * 1 2 3 32 32 H 1.09005 * 109.47064 * 240.00606 * 2 1 3 33 33 H 1.08992 * 109.47831 * 120.00199 * 2 1 3 34 34 H 1.08999 * 109.58873 * 305.20441 * 5 3 2 35 35 H 1.09000 * 109.58114 * 65.48250 * 5 3 2 36 36 H 1.08998 * 109.46740 * 299.99406 * 9 7 6 37 37 H 1.08997 * 109.46916 * 59.99867 * 9 7 6 38 38 H 1.09000 * 109.47721 * 54.99717 * 10 9 7 39 39 H 1.09002 * 109.55755 * 298.13145 * 12 11 10 40 40 H 1.09005 * 109.64470 * 177.86347 * 12 11 10 41 41 H 1.09008 * 109.57814 * 185.66596 * 13 12 11 42 42 H 1.09000 * 109.68399 * 65.34857 * 13 12 11 43 43 H 1.09002 * 109.56054 * 294.69014 * 14 13 12 44 44 H 1.09005 * 109.65290 * 174.40993 * 14 13 12 45 45 H 1.09002 * 109.58595 * 66.17799 * 16 6 5 46 46 H 1.09006 * 109.58324 * 186.45689 * 16 6 5 47 47 H 1.09003 * 109.50550 * 294.68732 * 17 16 6 48 48 H 1.09000 * 109.49658 * 174.58754 * 17 16 6 49 49 H 0.97008 * 119.99482 * 264.93511 * 20 18 17 50 50 H 0.96993 * 120.00105 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6046 1.9828 0.8407 5 6 1.6385 2.1269 -1.3105 6 7 2.2449 3.4644 -1.3506 7 6 1.4855 4.5566 -1.5671 8 8 0.2894 4.4407 -1.7315 9 6 2.1225 5.9218 -1.6060 10 6 1.0473 6.9791 -1.8646 11 8 0.4908 6.7842 -3.1671 12 6 -0.5103 7.7452 -3.5162 13 6 0.0979 9.1495 -3.4340 14 6 0.7075 9.3443 -2.0415 15 8 1.6313 8.2817 -1.7860 16 6 3.6951 3.5889 -1.1498 17 6 4.0735 2.8883 0.1588 18 6 3.5652 1.4451 0.1257 19 1 3.8546 0.9371 1.0457 20 7 4.1507 0.7477 -1.0219 21 6 5.3884 0.1720 -0.9146 22 1 5.9329 0.2318 0.0162 23 6 5.9430 -0.4893 -2.0018 24 7 5.2792 -0.5626 -3.1360 25 14 7.6318 -1.2740 -1.8557 26 1 7.4872 -2.6774 -1.3918 27 1 8.4491 -0.5114 -0.8781 28 1 8.3019 -1.2573 -3.1808 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.9963 1.5378 -2.1549 35 1 0.5530 2.2138 -1.3596 36 1 2.6077 6.1236 -0.6511 37 1 2.8639 5.9541 -2.4044 38 1 0.2604 6.8879 -1.1159 39 1 -1.3472 7.6688 -2.8221 40 1 -0.8599 7.5577 -4.5315 41 1 -0.6802 9.8948 -3.5996 42 1 0.8746 9.2581 -4.1911 43 1 -0.0833 9.3284 -1.2915 44 1 1.2302 10.2999 -2.0006 45 1 4.2207 3.1190 -1.9812 46 1 3.9672 4.6430 -1.0944 47 1 3.6191 3.4148 0.9981 48 1 5.1576 2.8895 0.2718 49 1 3.6614 0.6937 -1.8578 50 1 4.4024 -0.1549 -3.2121 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037833262.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:51 Heat of formation + Delta-G solvation = -144.537903 kcal Electronic energy + Delta-G solvation = -29701.288452 eV Core-core repulsion = 25727.596178 eV Total energy + Delta-G solvation = -3973.692273 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.63922 -40.78230 -39.24246 -36.71095 -36.08769 -35.54833 -34.20212 -33.45968 -31.56451 -30.84561 -29.67391 -26.95272 -26.61575 -25.45983 -25.16032 -24.30755 -22.26137 -22.14276 -20.92336 -19.88738 -19.19047 -18.77228 -18.02880 -17.52450 -17.28479 -16.90779 -16.57886 -16.30777 -15.96594 -15.73559 -15.72002 -15.46795 -15.09356 -14.84276 -14.70066 -14.36014 -14.31047 -14.21146 -13.89788 -13.61393 -13.26344 -13.15248 -12.94907 -12.69858 -12.56426 -12.43865 -12.26471 -12.18366 -12.09687 -12.03170 -11.87549 -11.66431 -11.63232 -11.43033 -11.04981 -11.03269 -10.93696 -10.76454 -10.69499 -9.65933 -9.00692 -8.28889 -5.22015 1.54716 1.61157 1.70742 1.79284 1.84312 2.61535 2.62787 2.76026 3.47325 3.49541 3.68717 3.74349 3.75253 3.77408 3.81471 3.93372 3.98828 4.00353 4.19497 4.20881 4.27558 4.35312 4.37073 4.39424 4.42440 4.45638 4.53708 4.60676 4.66508 4.77541 4.80952 4.81938 4.83909 4.92636 4.98615 5.09612 5.10346 5.15630 5.17929 5.24376 5.33268 5.43899 5.60104 5.71116 5.82656 6.13568 6.38322 6.57532 7.07822 7.17942 8.09272 8.21837 9.22397 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.015707 B = 0.003120 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.205815 B = 8973.119726 C = 9891.762303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.092 4.092 4 H 0.088 0.912 5 C 0.127 3.873 6 N -0.602 5.602 7 C 0.520 3.480 8 O -0.573 6.573 9 C -0.123 4.123 10 C 0.267 3.733 11 O -0.409 6.409 12 C 0.046 3.954 13 C -0.186 4.186 14 C 0.049 3.951 15 O -0.407 6.407 16 C 0.118 3.882 17 C -0.141 4.141 18 C 0.177 3.823 19 H 0.045 0.955 20 N -0.737 5.737 21 C -0.313 4.313 22 H 0.067 0.933 23 C -0.106 4.106 24 N -0.980 5.980 25 Si 1.125 2.875 26 H -0.291 1.291 27 H -0.272 1.272 28 H -0.300 1.300 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.039 0.961 33 H 0.062 0.938 34 H 0.041 0.959 35 H 0.086 0.914 36 H 0.143 0.857 37 H 0.113 0.887 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.104 0.896 41 H 0.113 0.887 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.121 0.879 45 H 0.047 0.953 46 H 0.109 0.891 47 H 0.081 0.919 48 H 0.066 0.934 49 H 0.358 0.642 50 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.563 19.315 6.574 22.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.112 4.112 4 H 0.107 0.893 5 C 0.004 3.996 6 N -0.334 5.334 7 C 0.309 3.691 8 O -0.453 6.453 9 C -0.162 4.162 10 C 0.172 3.828 11 O -0.330 6.330 12 C -0.030 4.030 13 C -0.223 4.223 14 C -0.027 4.027 15 O -0.328 6.328 16 C -0.004 4.004 17 C -0.182 4.182 18 C 0.068 3.932 19 H 0.063 0.937 20 N -0.380 5.380 21 C -0.445 4.445 22 H 0.085 0.915 23 C -0.297 4.297 24 N -0.629 5.629 25 Si 0.951 3.049 26 H -0.219 1.219 27 H -0.197 1.197 28 H -0.226 1.226 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.105 0.895 36 H 0.160 0.840 37 H 0.131 0.869 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.122 0.878 41 H 0.131 0.869 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.139 0.861 45 H 0.065 0.935 46 H 0.127 0.873 47 H 0.099 0.901 48 H 0.085 0.915 49 H 0.192 0.808 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -9.640 18.288 5.835 21.481 hybrid contribution -1.498 0.519 0.169 1.595 sum -11.139 18.808 6.004 22.668 Atomic orbital electron populations 1.21781 0.94526 1.02001 1.01966 1.21335 0.96259 0.95240 1.01487 1.21677 0.95752 0.96399 0.97352 0.89337 1.21462 0.98741 0.82096 0.97319 1.48112 1.08885 1.06200 1.70213 1.20599 0.86488 0.86526 0.75456 1.90662 1.16237 1.87090 1.51274 1.21512 0.98568 0.88963 1.07166 1.22783 0.92054 0.82923 0.85059 1.88161 1.56110 1.53569 1.35147 1.22857 0.89841 0.87971 1.02316 1.22765 1.02783 0.98027 0.98748 1.22949 0.93439 0.90708 0.95605 1.88034 1.38858 1.15152 1.90759 1.21700 0.78415 1.02032 0.98249 1.22383 1.01462 0.97519 0.96846 1.20394 0.90949 0.91558 0.90274 0.93745 1.42608 1.18593 1.65546 1.11226 1.20331 0.95422 1.29607 0.99098 0.91542 1.26930 1.08483 1.01670 0.92656 1.70970 1.14583 1.50003 1.27358 0.82631 0.71665 0.75513 0.75049 1.21853 1.19700 1.22646 0.92129 0.91583 0.93253 0.94233 0.91953 0.94078 0.89524 0.83951 0.86903 0.92288 0.92414 0.87773 0.86900 0.90695 0.91664 0.86102 0.93490 0.87306 0.90051 0.91529 0.80838 0.94831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 9.67 71.98 0.70 -3.12 16 2 C -0.10 -3.36 5.19 30.59 0.16 -3.20 16 3 C -0.09 -2.92 2.14 -10.71 -0.02 -2.95 16 4 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 5 C 0.13 4.32 5.03 86.36 0.43 4.76 16 6 N -0.60 -18.99 2.97 -818.92 -2.43 -21.42 16 7 C 0.52 16.16 7.58 87.66 0.66 16.82 16 8 O -0.57 -21.30 14.84 10.76 0.16 -21.14 16 9 C -0.12 -2.94 4.13 29.85 0.12 -2.82 16 10 C 0.27 6.63 2.80 71.98 0.20 6.83 16 11 O -0.41 -11.56 9.77 -120.74 -1.18 -12.74 16 12 C 0.05 0.90 6.96 72.07 0.50 1.41 16 13 C -0.19 -2.59 6.35 30.76 0.20 -2.40 16 14 C 0.05 0.71 6.96 72.07 0.50 1.21 16 15 O -0.41 -8.90 10.54 -126.22 -1.33 -10.23 16 16 C 0.12 3.57 6.08 86.36 0.53 4.09 16 17 C -0.14 -4.34 5.78 30.67 0.18 -4.17 16 18 C 0.18 6.45 2.53 45.02 0.11 6.56 16 19 H 0.04 1.69 8.08 -2.39 -0.02 1.67 16 20 N -0.74 -34.36 3.72 -322.81 -1.20 -35.56 16 21 C -0.31 -16.59 9.93 84.03 0.83 -15.76 16 22 H 0.07 3.44 7.83 -2.91 -0.02 3.42 16 23 C -0.11 -6.01 5.50 84.86 0.47 -5.54 16 24 N -0.98 -60.67 13.70 21.65 0.30 -60.38 16 25 Si 1.12 51.46 29.92 68.60 2.05 53.51 16 26 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 27 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 28 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 29 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.05 1.34 6.70 -2.38 -0.02 1.32 16 32 H 0.04 1.52 7.70 -2.38 -0.02 1.50 16 33 H 0.06 1.97 8.14 -2.39 -0.02 1.96 16 34 H 0.04 1.63 6.64 -2.39 -0.02 1.61 16 35 H 0.09 2.98 5.73 -2.39 -0.01 2.97 16 36 H 0.14 2.56 7.69 -2.39 -0.02 2.54 16 37 H 0.11 2.66 7.94 -2.39 -0.02 2.65 16 38 H 0.06 1.49 7.96 -2.39 -0.02 1.47 16 39 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 41 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 42 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.12 1.23 8.14 -2.38 -0.02 1.21 16 45 H 0.05 1.77 7.74 -2.39 -0.02 1.75 16 46 H 0.11 2.48 5.93 -2.38 -0.01 2.47 16 47 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 48 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 49 H 0.36 18.06 4.77 -92.70 -0.44 17.61 16 50 H 0.24 15.00 6.77 -92.71 -0.63 14.37 16 Total: -1.00 -71.17 382.58 2.56 -68.61 By element: Atomic # 1 Polarization: 37.00 SS G_CDS: 0.62 Total: 37.62 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: 5.57 Total: 1.73 kcal Atomic # 7 Polarization: -114.02 SS G_CDS: -3.34 Total: -117.36 kcal Atomic # 8 Polarization: -41.76 SS G_CDS: -2.35 Total: -44.11 kcal Atomic # 14 Polarization: 51.46 SS G_CDS: 2.05 Total: 53.51 kcal Total: -71.17 2.56 -68.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037833262.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.929 kcal (2) G-P(sol) polarization free energy of solvation -71.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds