Wall clock time and date at job start Tue Mar 31 2020 15:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47234 * 2 1 4 4 H 1.09000 * 109.50002 * 305.06573 * 3 2 1 5 5 C 1.53627 * 109.43002 * 65.29121 * 3 2 1 6 6 N 1.46930 * 108.54130 * 174.72325 * 5 3 2 7 7 C 1.34771 * 120.63001 * 126.37079 * 6 5 3 8 8 O 1.21278 * 120.00224 * 359.71439 * 7 6 5 9 9 C 1.50696 * 120.00023 * 179.71894 * 7 6 5 10 10 C 1.53002 * 109.47344 * 179.97438 * 9 7 6 11 11 O 1.42973 * 109.46854 * 65.00046 * 10 9 7 12 12 C 1.43094 * 113.76697 * 178.79431 * 11 10 9 13 13 C 1.53259 * 108.94333 * 302.02950 * 12 11 10 14 14 C 1.53252 * 108.84559 * 54.52657 * 13 12 11 15 15 O 1.42965 * 109.47457 * 184.99815 * 10 9 7 16 16 C 1.46923 * 118.73655 * 306.09223 * 6 5 3 17 17 C 1.53191 * 108.77853 * 53.86286 * 16 6 5 18 18 C 1.53041 * 109.31048 * 305.36235 * 17 16 6 19 19 H 1.08999 * 109.46007 * 181.36532 * 18 17 16 20 20 N 1.46494 * 109.46325 * 301.34214 * 18 17 16 21 21 C 1.36936 * 120.00070 * 275.00131 * 20 18 17 22 22 H 1.07997 * 120.00030 * 0.02562 * 21 20 18 23 23 C 1.38815 * 119.99464 * 179.97438 * 21 20 18 24 24 N 1.31612 * 120.00707 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99484 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47354 * 0.02562 * 25 23 21 27 27 H 1.48509 * 109.47081 * 119.99980 * 25 23 21 28 28 H 1.48496 * 109.47449 * 239.99939 * 25 23 21 29 29 H 1.08994 * 109.47831 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46791 * 299.99984 * 1 2 3 31 31 H 1.09004 * 109.46936 * 59.99481 * 1 2 3 32 32 H 1.08999 * 109.46791 * 240.00015 * 2 1 3 33 33 H 1.09004 * 109.46936 * 120.00519 * 2 1 3 34 34 H 1.08999 * 109.74067 * 54.98663 * 5 3 2 35 35 H 1.08997 * 109.66266 * 294.41202 * 5 3 2 36 36 H 1.09008 * 109.47224 * 59.99699 * 9 7 6 37 37 H 1.08997 * 109.47214 * 299.99692 * 9 7 6 38 38 H 1.09002 * 109.47070 * 305.00057 * 10 9 7 39 39 H 1.08997 * 109.55679 * 182.18874 * 12 11 10 40 40 H 1.08999 * 109.64434 * 61.92599 * 12 11 10 41 41 H 1.08996 * 109.57421 * 294.71662 * 13 12 11 42 42 H 1.08994 * 109.57080 * 174.33591 * 13 12 11 43 43 H 1.09003 * 109.56250 * 185.63689 * 14 13 12 44 44 H 1.08999 * 109.56377 * 65.31288 * 14 13 12 45 45 H 1.09003 * 109.58651 * 173.64942 * 16 6 5 46 46 H 1.09004 * 109.58903 * 293.92753 * 16 6 5 47 47 H 1.09005 * 109.49551 * 65.31552 * 17 16 6 48 48 H 1.08999 * 109.50025 * 185.38084 * 17 16 6 49 49 H 0.97011 * 119.99817 * 94.99607 * 20 18 17 50 50 H 0.97000 * 120.00170 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9823 -0.8410 5 6 1.6394 2.1261 1.3161 6 7 2.2452 3.4643 1.3508 7 6 1.4860 4.5563 1.5683 8 8 0.2900 4.4405 1.7326 9 6 2.1231 5.9214 1.6073 10 6 1.0482 6.9788 1.8671 11 8 0.4927 6.7833 3.1700 12 6 -0.5081 7.7442 3.5202 13 6 0.1002 9.1486 3.4382 14 6 0.7087 9.3439 2.0452 15 8 1.6321 8.2814 1.7886 16 6 3.6954 3.5886 1.1499 17 6 4.0738 2.8880 -0.1588 18 6 3.5653 1.4449 -0.1257 19 1 3.8544 0.9369 -1.0457 20 7 4.1507 0.7473 1.0217 21 6 5.3879 0.1703 0.9139 22 1 5.9323 0.2299 -0.0170 23 6 5.9428 -0.4902 2.0014 24 7 5.2801 -0.5616 3.1363 25 14 7.6302 -1.2779 1.8541 26 1 8.1615 -1.0577 0.4850 27 1 8.5505 -0.6659 2.8460 28 1 7.5205 -2.7358 2.1144 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.0009 1.5394 2.1607 35 1 0.5543 2.2149 1.3678 36 1 2.6078 6.1236 0.6520 37 1 2.8651 5.9535 2.4050 38 1 0.2608 6.8879 1.1190 39 1 -0.8552 7.5557 4.5361 40 1 -1.3468 7.6687 2.8282 41 1 0.8778 9.2545 4.1945 42 1 -0.6777 9.8937 3.6047 43 1 1.2318 10.2994 2.0062 44 1 -0.0827 9.3284 1.2958 45 1 3.9672 4.6426 1.0920 46 1 4.2210 3.1210 1.9825 47 1 3.6194 3.4148 -0.9980 48 1 5.1579 2.8897 -0.2722 49 1 3.6620 0.6941 1.8580 50 1 5.6678 -1.0235 3.8961 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037833265.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:55 Heat of formation + Delta-G solvation = -144.299617 kcal Electronic energy + Delta-G solvation = -29641.859298 eV Core-core repulsion = 25668.177357 eV Total energy + Delta-G solvation = -3973.681941 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.55828 -40.72293 -39.12538 -36.68067 -35.85781 -35.35486 -34.16691 -33.37545 -31.51072 -30.96732 -29.68757 -26.93026 -26.64208 -25.50228 -25.02746 -24.23859 -22.14966 -22.09507 -20.79379 -19.63833 -19.21604 -18.68019 -17.97427 -17.47229 -17.13978 -16.69438 -16.60807 -16.13715 -15.87278 -15.72680 -15.70683 -15.49366 -14.89841 -14.75505 -14.59514 -14.29298 -14.27144 -14.05799 -13.84648 -13.58452 -13.16655 -13.05621 -12.87646 -12.82971 -12.61482 -12.42015 -12.34876 -12.18940 -12.07296 -12.04325 -11.96886 -11.81652 -11.55582 -11.43303 -11.09811 -11.00430 -10.90427 -10.72218 -10.66575 -9.56152 -8.89335 -7.86506 -5.12449 1.49900 1.51295 1.59796 1.61691 1.87079 2.61382 2.65935 2.66958 3.47420 3.55556 3.74898 3.79313 3.80205 3.85541 3.88917 4.03563 4.07737 4.12468 4.23675 4.29213 4.38319 4.40789 4.44580 4.46320 4.48818 4.50896 4.63670 4.67585 4.74408 4.83165 4.84964 4.88072 4.92253 5.03617 5.08042 5.11674 5.19762 5.25240 5.28077 5.34826 5.42430 5.54021 5.63464 5.69966 5.85540 6.16715 6.35378 6.47161 7.15273 7.42792 8.19869 8.42780 9.37042 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.015647 B = 0.003112 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.056353 B = 8996.550530 C = 9913.536416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.090 4.090 4 H 0.087 0.913 5 C 0.126 3.874 6 N -0.601 5.601 7 C 0.519 3.481 8 O -0.575 6.575 9 C -0.123 4.123 10 C 0.267 3.733 11 O -0.408 6.408 12 C 0.046 3.954 13 C -0.186 4.186 14 C 0.049 3.951 15 O -0.407 6.407 16 C 0.117 3.883 17 C -0.142 4.142 18 C 0.171 3.829 19 H 0.048 0.952 20 N -0.725 5.725 21 C -0.222 4.222 22 H 0.076 0.924 23 C -0.075 4.075 24 N -0.970 5.970 25 Si 0.962 3.038 26 H -0.266 1.266 27 H -0.299 1.299 28 H -0.302 1.302 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.042 0.958 34 H 0.044 0.956 35 H 0.084 0.916 36 H 0.143 0.857 37 H 0.113 0.887 38 H 0.059 0.941 39 H 0.104 0.896 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.112 0.888 43 H 0.121 0.879 44 H 0.065 0.935 45 H 0.107 0.893 46 H 0.050 0.950 47 H 0.080 0.920 48 H 0.068 0.932 49 H 0.373 0.627 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.741 19.181 -6.192 22.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.144 4.144 3 C -0.110 4.110 4 H 0.105 0.895 5 C 0.003 3.997 6 N -0.333 5.333 7 C 0.308 3.692 8 O -0.455 6.455 9 C -0.162 4.162 10 C 0.172 3.828 11 O -0.330 6.330 12 C -0.030 4.030 13 C -0.223 4.223 14 C -0.027 4.027 15 O -0.328 6.328 16 C -0.005 4.005 17 C -0.182 4.182 18 C 0.062 3.938 19 H 0.066 0.934 20 N -0.366 5.366 21 C -0.354 4.354 22 H 0.094 0.906 23 C -0.267 4.267 24 N -0.621 5.621 25 Si 0.793 3.207 26 H -0.190 1.190 27 H -0.227 1.227 28 H -0.230 1.230 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.102 0.898 36 H 0.160 0.840 37 H 0.131 0.869 38 H 0.077 0.923 39 H 0.122 0.878 40 H 0.076 0.924 41 H 0.093 0.907 42 H 0.131 0.869 43 H 0.139 0.861 44 H 0.083 0.917 45 H 0.125 0.875 46 H 0.069 0.931 47 H 0.098 0.902 48 H 0.087 0.913 49 H 0.206 0.794 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -10.944 18.942 -6.131 22.719 hybrid contribution 0.631 -0.836 0.788 1.311 sum -10.313 18.106 -5.343 21.511 Atomic orbital electron populations 1.21781 0.94815 1.01864 1.01833 1.21345 0.96024 0.95365 1.01688 1.21732 0.95878 0.96318 0.97088 0.89478 1.21571 0.98519 0.82017 0.97548 1.48121 1.08988 1.06190 1.70003 1.20578 0.86493 0.86553 0.75538 1.90656 1.16293 1.87118 1.51446 1.21511 0.98525 0.89017 1.07141 1.22793 0.92105 0.82913 0.85025 1.88167 1.56116 1.53536 1.35135 1.22855 0.89876 0.87993 1.02281 1.22768 1.02761 0.98030 0.98763 1.22943 0.93447 0.90722 0.95583 1.88032 1.38872 1.15169 1.90732 1.21723 0.78387 1.01940 0.98497 1.22400 1.01546 0.97594 0.96697 1.20470 0.90995 0.91649 0.90654 0.93414 1.42622 1.18341 1.64244 1.11441 1.19605 0.94262 1.24846 0.96679 0.90568 1.25385 1.01803 1.03398 0.96138 1.69813 1.39574 1.49908 1.02854 0.85220 0.80744 0.77274 0.77415 1.19007 1.22694 1.22954 0.92240 0.93370 0.91720 0.91865 0.93907 0.93759 0.89803 0.83956 0.86929 0.92318 0.87822 0.92417 0.90709 0.86920 0.86130 0.91666 0.87530 0.93147 0.90185 0.91306 0.79403 0.94489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 9.68 71.98 0.70 -3.15 16 2 C -0.11 -3.38 5.19 30.59 0.16 -3.22 16 3 C -0.09 -2.86 2.15 -10.57 -0.02 -2.88 16 4 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 5 C 0.13 4.35 5.05 86.51 0.44 4.79 16 6 N -0.60 -19.07 2.97 -818.07 -2.43 -21.49 16 7 C 0.52 16.26 7.58 87.66 0.66 16.93 16 8 O -0.57 -21.58 14.83 10.76 0.16 -21.42 16 9 C -0.12 -2.96 4.13 29.85 0.12 -2.84 16 10 C 0.27 6.67 2.80 71.98 0.20 6.87 16 11 O -0.41 -11.64 9.77 -120.75 -1.18 -12.82 16 12 C 0.05 0.91 6.96 72.07 0.50 1.41 16 13 C -0.19 -2.62 6.35 30.77 0.20 -2.43 16 14 C 0.05 0.72 6.96 72.07 0.50 1.22 16 15 O -0.41 -8.95 10.54 -126.22 -1.33 -10.28 16 16 C 0.12 3.50 6.08 86.36 0.52 4.03 16 17 C -0.14 -4.25 5.78 30.67 0.18 -4.08 16 18 C 0.17 6.11 2.53 45.02 0.11 6.22 16 19 H 0.05 1.75 8.08 -2.39 -0.02 1.73 16 20 N -0.73 -33.49 3.72 -322.82 -1.20 -34.70 16 21 C -0.22 -11.51 9.93 84.03 0.83 -10.67 16 22 H 0.08 3.80 7.83 -2.91 -0.02 3.78 16 23 C -0.08 -4.17 5.50 84.86 0.47 -3.70 16 24 N -0.97 -58.18 13.06 21.65 0.28 -57.89 16 25 Si 0.96 45.31 29.55 68.60 2.03 47.33 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 27 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 28 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.05 1.32 6.70 -2.39 -0.02 1.31 16 31 H 0.06 1.49 8.14 -2.39 -0.02 1.48 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.04 1.65 7.70 -2.39 -0.02 1.64 16 34 H 0.04 1.79 6.63 -2.39 -0.02 1.78 16 35 H 0.08 2.92 5.73 -2.39 -0.01 2.91 16 36 H 0.14 2.57 7.69 -2.38 -0.02 2.55 16 37 H 0.11 2.68 7.94 -2.39 -0.02 2.66 16 38 H 0.06 1.49 7.96 -2.39 -0.02 1.47 16 39 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.11 2.42 5.93 -2.39 -0.01 2.40 16 46 H 0.05 1.90 7.75 -2.39 -0.02 1.88 16 47 H 0.08 1.95 8.14 -2.38 -0.02 1.94 16 48 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 49 H 0.37 19.05 5.93 -92.70 -0.55 18.50 16 50 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -68.69 384.32 2.28 -66.41 By element: Atomic # 1 Polarization: 36.00 SS G_CDS: 0.37 Total: 36.37 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 5.57 Total: 8.50 kcal Atomic # 7 Polarization: -110.74 SS G_CDS: -3.35 Total: -114.08 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -2.35 Total: -44.53 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -68.69 2.28 -66.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037833265.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.890 kcal (2) G-P(sol) polarization free energy of solvation -68.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds