Wall clock time and date at job start Tue Mar 31 2020 15:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47648 * 2 1 4 4 H 1.09006 * 110.53685 * 52.37930 * 3 2 1 5 5 C 1.55131 * 110.52390 * 289.60289 * 3 2 1 6 6 C 1.54996 * 102.09509 * 220.39135 * 5 3 2 7 7 O 1.44384 * 103.48695 * 37.10630 * 6 5 3 8 8 C 1.43745 * 106.97396 * 319.93903 * 7 6 5 9 9 H 1.08997 * 109.87492 * 266.93989 * 8 7 6 10 10 C 1.50699 * 109.87480 * 145.93939 * 8 7 6 11 11 O 1.21274 * 120.00401 * 356.70693 * 10 8 7 12 12 N 1.34785 * 119.99674 * 176.70335 * 10 8 7 13 13 C 1.46492 * 119.99911 * 180.02562 * 12 10 8 14 14 C 1.53004 * 109.47258 * 180.02562 * 13 12 10 15 15 H 1.08998 * 108.56696 * 57.94228 * 14 13 12 16 16 C 1.46915 * 108.62240 * 175.75371 * 14 13 12 17 17 N 1.50113 * 106.77935 * 177.92027 * 16 14 13 18 18 C 1.36940 * 120.63030 * 111.30880 * 17 16 14 19 19 H 1.08000 * 120.00209 * 320.43719 * 18 17 16 20 20 C 1.38819 * 119.99693 * 140.44344 * 18 17 16 21 21 N 1.31614 * 119.99783 * 156.58424 * 20 18 17 22 22 Si 1.86793 * 119.99905 * 336.57973 * 20 18 17 23 23 H 1.48496 * 109.47150 * 95.55602 * 22 20 18 24 24 H 1.48501 * 109.47317 * 215.55884 * 22 20 18 25 25 H 1.48508 * 109.47336 * 335.55643 * 22 20 18 26 26 C 1.43520 * 118.85120 * 291.33757 * 17 16 14 27 27 C 1.55330 * 116.18183 * 89.17626 * 26 17 16 28 28 C 1.55189 * 108.97257 * 319.66786 * 27 26 17 29 29 O 1.39641 * 110.56944 * 322.08226 * 28 27 26 30 30 H 1.08994 * 109.47312 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47034 * 300.00209 * 1 2 3 32 32 H 1.08998 * 109.47118 * 60.00317 * 1 2 3 33 33 H 1.08996 * 109.47435 * 239.99846 * 2 1 3 34 34 H 1.09007 * 109.47101 * 119.99948 * 2 1 3 35 35 H 1.09003 * 110.83894 * 102.22296 * 5 3 2 36 36 H 1.09008 * 110.97952 * 338.62557 * 5 3 2 37 37 H 1.08994 * 110.62333 * 278.60333 * 6 5 3 38 38 H 1.08999 * 110.74988 * 155.66572 * 6 5 3 39 39 H 0.96999 * 119.99913 * 0.02562 * 12 10 8 40 40 H 1.08998 * 109.47393 * 59.99857 * 13 12 10 41 41 H 1.09009 * 109.47481 * 300.00113 * 13 12 10 42 42 H 1.08996 * 109.99429 * 297.24404 * 16 14 13 43 43 H 1.09005 * 109.98577 * 58.51590 * 16 14 13 44 44 H 0.97006 * 119.99839 * 179.97438 * 21 20 18 45 45 H 1.09004 * 108.04563 * 327.51439 * 26 17 16 46 46 H 1.09003 * 108.26552 * 211.00641 * 26 17 16 47 47 H 1.08997 * 109.56330 * 199.78929 * 27 26 17 48 48 H 1.08997 * 109.57135 * 79.54791 * 27 26 17 49 49 H 1.08992 * 109.25431 * 82.36925 * 28 27 26 50 50 H 1.09003 * 109.25152 * 201.83837 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5801 2.0107 0.8085 5 6 1.7619 2.1177 -1.3686 6 6 3.0643 2.9245 -1.6034 7 8 4.0949 2.0605 -1.0782 8 6 3.5756 1.4716 0.1259 9 1 3.8655 2.0730 0.9874 10 6 4.1039 0.0686 0.2792 11 8 4.8049 -0.4133 -0.5851 12 7 3.7974 -0.6506 1.3772 13 6 4.3114 -2.0142 1.5266 14 6 3.8188 -2.6028 2.8502 15 1 2.7291 -2.5819 2.8551 16 6 4.2588 -4.0020 2.9340 17 7 3.7999 -4.5216 4.2655 18 6 2.8140 -5.4689 4.3426 19 1 1.9628 -5.4176 3.6799 20 6 2.9088 -6.4950 5.2728 21 7 1.8223 -7.1163 5.6801 22 14 4.5781 -6.9941 5.9460 23 1 4.8206 -6.2972 7.2347 24 1 4.6048 -8.4626 6.1647 25 1 5.6363 -6.6191 4.9738 26 6 4.4118 -4.0078 5.4577 27 6 3.7530 -2.7446 6.0766 28 6 3.3382 -1.7805 4.9334 29 8 4.2941 -1.7864 3.9155 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 0.8993 2.7812 -1.3055 36 1 1.6203 1.3714 -2.1505 37 1 3.0366 3.8662 -1.0552 38 1 3.2202 3.1053 -2.6669 39 1 3.2364 -0.2653 2.0684 40 1 5.4012 -1.9945 1.5205 41 1 3.9546 -2.6296 0.7006 42 1 3.8064 -4.5837 2.1309 43 1 5.3454 -4.0556 2.8660 44 1 1.8886 -7.8336 6.3298 45 1 5.4509 -3.7708 5.2287 46 1 4.4077 -4.7959 6.2107 47 1 4.4654 -2.2464 6.7340 48 1 2.8710 -3.0352 6.6472 49 1 2.3779 -2.0973 4.5268 50 1 3.2441 -0.7702 5.3317 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073645556.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:13 Heat of formation + Delta-G solvation = -89.440586 kcal Electronic energy + Delta-G solvation = -29842.941002 eV Core-core repulsion = 25871.637928 eV Total energy + Delta-G solvation = -3971.303074 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.89967 -39.53622 -38.31829 -35.51003 -35.22837 -34.47941 -32.32976 -31.78535 -30.65509 -29.91519 -28.70381 -26.02386 -25.44921 -24.04472 -23.14790 -22.37807 -21.33446 -21.24580 -20.20053 -19.81630 -17.43120 -17.09607 -17.01739 -16.41518 -15.98186 -15.78686 -15.45281 -15.17351 -14.91846 -14.62130 -14.45877 -14.20593 -14.07497 -13.72503 -13.30636 -13.18642 -13.02425 -12.73619 -12.50031 -12.43961 -12.32192 -11.93860 -11.89923 -11.68969 -11.56300 -11.40177 -11.26617 -10.97964 -10.90477 -10.80802 -10.55096 -10.43030 -10.29476 -10.22966 -9.77529 -9.68420 -9.55159 -9.06608 -8.91284 -8.54564 -6.87539 -6.09656 -3.54178 2.57613 2.87231 3.28894 3.43539 3.50799 3.76377 4.05006 4.20167 4.30356 4.45397 4.46663 4.68752 4.72423 4.83374 4.89107 5.03928 5.10984 5.15426 5.15654 5.29993 5.32732 5.33215 5.38461 5.49094 5.53715 5.57147 5.68516 5.71168 5.75854 5.81091 5.87178 5.89182 5.95717 6.00233 6.06041 6.11733 6.22041 6.40101 6.45316 6.50138 6.54759 6.58066 6.75874 6.82462 7.46505 7.59177 7.98998 8.20406 8.25368 8.90602 9.61582 10.06072 11.05247 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.022110 B = 0.002998 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.111162 B = 9336.601082 C = 9644.027045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C -0.112 4.112 4 H 0.094 0.906 5 C -0.148 4.148 6 C 0.043 3.957 7 O -0.347 6.347 8 C 0.061 3.939 9 H 0.093 0.907 10 C 0.518 3.482 11 O -0.524 6.524 12 N -0.718 5.718 13 C 0.116 3.884 14 C 0.063 3.937 15 H 0.069 0.931 16 C 0.113 3.887 17 N -0.599 5.599 18 C -0.276 4.276 19 H 0.076 0.924 20 C 0.043 3.957 21 N -0.895 5.895 22 Si 0.878 3.122 23 H -0.285 1.285 24 H -0.300 1.300 25 H -0.269 1.269 26 C 0.151 3.849 27 C -0.168 4.168 28 C 0.065 3.935 29 O -0.355 6.355 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.096 0.904 39 H 0.402 0.598 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.044 0.956 44 H 0.264 0.736 45 H 0.032 0.968 46 H 0.043 0.957 47 H 0.055 0.945 48 H 0.066 0.934 49 H 0.058 0.942 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.908 19.951 -9.235 22.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C -0.131 4.131 4 H 0.112 0.888 5 C -0.186 4.186 6 C -0.033 4.033 7 O -0.265 6.265 8 C -0.001 4.001 9 H 0.111 0.889 10 C 0.303 3.697 11 O -0.399 6.399 12 N -0.373 5.373 13 C -0.008 4.008 14 C 0.004 3.996 15 H 0.087 0.913 16 C -0.012 4.012 17 N -0.321 5.321 18 C -0.404 4.404 19 H 0.094 0.906 20 C -0.159 4.159 21 N -0.535 5.535 22 Si 0.708 3.292 23 H -0.213 1.213 24 H -0.228 1.228 25 H -0.193 1.193 26 C 0.024 3.976 27 C -0.209 4.209 28 C -0.012 4.012 29 O -0.274 6.274 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.114 0.886 39 H 0.238 0.762 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.050 0.950 46 H 0.061 0.939 47 H 0.073 0.927 48 H 0.084 0.916 49 H 0.076 0.924 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.067 19.475 -9.879 21.863 hybrid contribution 0.163 -0.246 1.110 1.149 sum -0.904 19.229 -8.768 21.153 Atomic orbital electron populations 1.21750 0.95078 1.02194 1.01630 1.22095 0.96804 0.94654 1.04094 1.22636 0.92994 0.98469 0.99014 0.88809 1.23291 0.98480 0.99865 0.96924 1.23631 0.86405 0.93195 1.00115 1.89016 1.37547 1.60984 1.38931 1.22739 0.93824 0.92885 0.90610 0.88916 1.20246 0.80432 0.87049 0.82016 1.90718 1.36826 1.71363 1.40961 1.46067 1.53230 1.16086 1.21889 1.21720 1.00206 0.81793 0.97104 1.21989 0.98757 0.93257 0.85638 0.91289 1.21036 0.98272 0.91581 0.90346 1.44119 1.44330 1.44973 0.98676 1.18698 0.97857 1.02692 1.21140 0.90641 1.25518 0.96470 0.95957 0.97908 1.69879 1.27321 1.25061 1.31189 0.86892 0.86899 0.76653 0.78743 1.21324 1.22836 1.19329 1.20643 0.94306 0.93240 0.89441 1.23490 1.01326 0.98206 0.97883 1.22427 0.91610 0.97779 0.89410 1.87609 1.44316 1.67318 1.28118 0.92241 0.92595 0.92877 0.91337 0.89707 0.89854 0.90012 0.91922 0.88599 0.76237 0.90757 0.90190 0.90036 0.93810 0.92570 0.94974 0.93881 0.92652 0.91570 0.92364 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.79 37.15 0.36 -0.80 16 2 C -0.14 -1.26 4.15 -26.74 -0.11 -1.37 16 3 C -0.11 -0.89 3.05 -88.92 -0.27 -1.16 16 4 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 5 C -0.15 -1.05 6.05 -24.55 -0.15 -1.20 16 6 C 0.04 0.34 7.72 38.21 0.29 0.64 16 7 O -0.35 -4.33 10.74 -54.80 -0.59 -4.92 16 8 C 0.06 0.64 3.84 -27.31 -0.10 0.54 16 9 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 10 C 0.52 7.02 5.68 -10.98 -0.06 6.96 16 11 O -0.52 -9.44 16.53 -14.01 -0.23 -9.68 16 12 N -0.72 -8.59 3.63 -60.29 -0.22 -8.81 16 13 C 0.12 1.59 5.24 -4.04 -0.02 1.57 16 14 C 0.06 0.97 2.10 -29.64 -0.06 0.91 16 15 H 0.07 1.07 6.77 -51.93 -0.35 0.72 16 16 C 0.11 2.09 5.59 -4.94 -0.03 2.06 16 17 N -0.60 -13.53 2.16 -174.43 -0.38 -13.91 16 18 C -0.28 -7.32 9.93 -15.06 -0.15 -7.47 16 19 H 0.08 2.15 8.06 -52.49 -0.42 1.72 16 20 C 0.04 1.21 5.27 -17.43 -0.09 1.11 16 21 N -0.89 -26.41 13.97 55.49 0.78 -25.64 16 22 Si 0.88 21.96 25.24 -169.99 -4.29 17.67 16 23 H -0.29 -6.99 6.73 56.52 0.38 -6.61 16 24 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 25 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 26 C 0.15 3.25 4.30 -4.38 -0.02 3.23 16 27 C -0.17 -3.03 6.74 -24.34 -0.16 -3.19 16 28 C 0.07 1.01 6.38 38.32 0.24 1.26 16 29 O -0.36 -5.67 9.54 -31.94 -0.30 -5.98 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 32 H 0.05 0.37 7.63 -51.93 -0.40 -0.02 16 33 H 0.07 0.76 7.70 -51.93 -0.40 0.36 16 34 H 0.08 0.81 4.83 -51.93 -0.25 0.56 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.65 7.78 -51.92 -0.40 0.25 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.40 4.01 7.39 -40.82 -0.30 3.71 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.08 1.09 8.14 -51.92 -0.42 0.67 16 42 H 0.08 1.47 8.00 -51.93 -0.42 1.05 16 43 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.03 0.67 7.99 -51.93 -0.42 0.25 16 46 H 0.04 1.02 3.46 -51.93 -0.18 0.84 16 47 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 49 H 0.06 0.94 6.66 -51.93 -0.35 0.59 16 50 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 378.99 15.07 5.71 5.71 Total: -1.00 -32.89 378.99 -8.39 -41.28 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -8.53 Total: 1.18 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -0.33 Total: 3.08 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: 0.18 Total: -48.35 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -1.12 Total: -20.58 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.29 Total: 17.67 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.89 -8.39 -41.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073645556.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.160 kcal (2) G-P(sol) polarization free energy of solvation -32.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds