Wall clock time and date at job start Tue Mar 31 2020 15:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.46869 * 2 1 4 4 C 1.53002 * 109.46678 * 119.99861 * 2 1 3 5 5 C 1.50704 * 109.46722 * 176.95870 * 4 2 1 6 6 O 1.21288 * 119.99835 * 5.36333 * 5 4 2 7 7 N 1.34770 * 120.00055 * 185.36979 * 5 4 2 8 8 C 1.46496 * 120.00205 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47187 * 180.02562 * 8 7 5 10 10 H 1.08995 * 108.57038 * 60.00286 * 9 8 7 11 11 C 1.46924 * 108.61825 * 177.94714 * 9 8 7 12 12 N 1.50109 * 106.78305 * 178.04375 * 11 9 8 13 13 C 1.36934 * 120.75155 * 111.21342 * 12 11 9 14 14 H 1.07998 * 119.99489 * 154.51121 * 13 12 11 15 15 C 1.38808 * 120.00131 * 334.51369 * 13 12 11 16 16 N 1.31615 * 120.00170 * 341.37656 * 15 13 12 17 17 Si 1.86800 * 119.99999 * 161.37889 * 15 13 12 18 18 H 1.48506 * 109.47239 * 359.97438 * 17 15 13 19 19 H 1.48507 * 109.47259 * 119.99921 * 17 15 13 20 20 H 1.48497 * 109.47118 * 239.99871 * 17 15 13 21 21 C 1.43421 * 118.60976 * 291.15348 * 12 11 9 22 22 C 1.55330 * 116.24252 * 89.40537 * 21 12 11 23 23 C 1.55190 * 108.87224 * 319.46611 * 22 21 12 24 24 O 1.39653 * 110.56587 * 322.13943 * 23 22 21 25 25 C 1.53000 * 109.46918 * 239.99733 * 2 1 3 26 26 C 1.53004 * 117.49361 * 128.62552 * 25 2 1 27 27 C 1.53001 * 117.50081 * 60.00379 * 25 2 1 28 28 H 1.09003 * 109.47408 * 174.62411 * 1 2 3 29 29 H 1.08995 * 109.47721 * 294.62563 * 1 2 3 30 30 H 1.09007 * 109.47168 * 54.62804 * 1 2 3 31 31 H 0.96703 * 113.99744 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.47262 * 296.95182 * 4 2 1 33 33 H 1.08993 * 109.47453 * 56.95771 * 4 2 1 34 34 H 0.97003 * 119.99898 * 359.97438 * 7 5 4 35 35 H 1.09006 * 109.47426 * 299.99875 * 8 7 5 36 36 H 1.08998 * 109.47245 * 60.00114 * 8 7 5 37 37 H 1.09002 * 109.98877 * 297.23233 * 11 9 8 38 38 H 1.08997 * 109.99187 * 58.60213 * 11 9 8 39 39 H 0.97000 * 120.00381 * 179.97438 * 16 15 13 40 40 H 1.08994 * 108.12860 * 327.64175 * 21 12 11 41 41 H 1.09007 * 107.96376 * 211.03178 * 21 12 11 42 42 H 1.09001 * 109.57133 * 199.64457 * 22 21 12 43 43 H 1.09003 * 109.56693 * 79.27693 * 22 21 12 44 44 H 1.09004 * 109.25709 * 201.86502 * 23 22 21 45 45 H 1.09001 * 109.26225 * 82.41984 * 23 22 21 46 46 H 1.08995 * 115.56261 * 274.30618 * 25 2 1 47 47 H 1.08993 * 117.50308 * 359.97438 * 26 25 2 48 48 H 1.09004 * 117.49374 * 145.02236 * 26 25 2 49 49 H 1.08999 * 117.49803 * 214.98074 * 27 25 2 50 50 H 1.09004 * 117.49651 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5451 -0.7869 1.2122 6 8 4.1552 -0.2207 0.3300 7 7 4.2131 -1.4747 2.1592 8 6 5.6762 -1.5390 2.1229 9 6 6.1794 -2.3756 3.3010 10 1 5.7615 -3.3788 3.2179 11 6 7.6434 -2.4689 3.2186 12 7 8.0957 -3.2537 4.4156 13 6 8.6195 -4.5107 4.2716 14 1 9.2985 -4.9011 5.0151 15 6 8.2778 -5.2830 3.1699 16 7 7.2036 -4.9897 2.4683 17 14 9.3425 -6.7386 2.6833 18 1 10.4838 -6.8544 3.6264 19 1 8.5324 -7.9823 2.7307 20 1 9.8582 -6.5360 1.3055 21 6 7.9691 -2.6590 5.7145 22 6 6.6268 -2.9071 6.4557 23 6 5.4629 -2.8030 5.4345 24 8 5.7111 -1.7865 4.5096 25 6 2.0400 -0.7213 -1.2492 26 6 3.0742 0.0051 -2.1116 27 6 1.6358 -0.1496 -2.6096 28 1 -0.3634 -1.0231 -0.0963 29 1 -0.3634 0.4282 0.9341 30 1 -0.3634 0.5949 -0.8380 31 1 2.9703 1.4237 -0.0004 32 1 1.7219 -0.1768 2.1384 33 1 1.6327 -1.7319 1.2770 34 1 3.7252 -1.9273 2.8649 35 1 5.9966 -1.9991 1.1880 36 1 6.0860 -0.5313 2.1911 37 1 7.9328 -2.9873 2.3045 38 1 8.0820 -1.4713 3.2374 39 1 6.9650 -5.5291 1.6982 40 1 8.1046 -1.5826 5.6094 41 1 8.7768 -3.0407 6.3392 42 1 6.4963 -2.1570 7.2357 43 1 6.6340 -3.9020 6.9009 44 1 4.5363 -2.5867 5.9662 45 1 5.3611 -3.7517 4.9073 46 1 2.1271 -1.8045 -1.1643 47 1 3.3909 0.9970 -1.7893 48 1 3.8416 -0.6003 -2.5941 49 1 1.4568 -0.8567 -3.4196 50 1 1.0061 0.7402 -2.6146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149607405.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:55 Heat of formation + Delta-G solvation = -80.039614 kcal Electronic energy + Delta-G solvation = -29773.331834 eV Core-core repulsion = 25802.436416 eV Total energy + Delta-G solvation = -3970.895418 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.31226 -39.12561 -37.98029 -35.06413 -34.94269 -34.46677 -32.49931 -31.98957 -31.16235 -29.00544 -28.01101 -25.42627 -25.23583 -23.41138 -22.50446 -22.15383 -20.83232 -20.35691 -19.73003 -19.60558 -17.25988 -17.04951 -16.73261 -16.20653 -15.96969 -15.44749 -15.09551 -14.88842 -14.51929 -14.25466 -14.14599 -13.91768 -13.47028 -13.11644 -12.83186 -12.80119 -12.67183 -12.49430 -12.39465 -12.19099 -11.98261 -11.85939 -11.44407 -11.26800 -11.24898 -11.07528 -10.89238 -10.78390 -10.49935 -10.40338 -10.21914 -10.14418 -10.01196 -9.83287 -9.72600 -9.54417 -9.41620 -8.83784 -8.69496 -8.55009 -6.84975 -5.96833 -3.36429 2.83813 3.29122 3.38582 3.40241 3.46058 3.87224 4.23756 4.39513 4.60055 4.65519 4.69965 4.84620 5.09405 5.12913 5.20221 5.24598 5.29573 5.37051 5.48400 5.52982 5.68735 5.69441 5.73805 5.78491 5.82397 5.88815 5.97076 6.06436 6.09483 6.11571 6.21386 6.29440 6.32046 6.37777 6.43994 6.53165 6.63657 6.67181 6.78339 6.88489 6.92332 7.08248 7.27013 7.68495 7.75560 7.79992 8.09461 8.28462 8.46734 9.02876 9.70698 10.25617 11.12283 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.016038 B = 0.003206 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.481617 B = 8732.541298 C = 9799.247791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.180 3.820 3 O -0.565 6.565 4 C -0.170 4.170 5 C 0.511 3.489 6 O -0.545 6.545 7 N -0.712 5.712 8 C 0.122 3.878 9 C 0.060 3.940 10 H 0.108 0.892 11 C 0.144 3.856 12 N -0.588 5.588 13 C -0.248 4.248 14 H 0.069 0.931 15 C 0.003 3.997 16 N -0.908 5.908 17 Si 0.904 3.096 18 H -0.278 1.278 19 H -0.291 1.291 20 H -0.288 1.288 21 C 0.160 3.840 22 C -0.172 4.172 23 C 0.067 3.933 24 O -0.370 6.370 25 C -0.175 4.175 26 C -0.139 4.139 27 C -0.184 4.184 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.387 0.613 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.400 0.600 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.101 0.899 38 H 0.019 0.981 39 H 0.254 0.746 40 H 0.031 0.969 41 H 0.033 0.967 42 H 0.049 0.951 43 H 0.056 0.944 44 H 0.050 0.950 45 H 0.063 0.937 46 H 0.100 0.900 47 H 0.098 0.902 48 H 0.087 0.913 49 H 0.086 0.914 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.168 7.107 -2.768 14.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.139 3.861 3 O -0.377 6.377 4 C -0.210 4.210 5 C 0.297 3.703 6 O -0.424 6.424 7 N -0.362 5.362 8 C -0.002 4.002 9 C 0.001 3.999 10 H 0.125 0.875 11 C 0.019 3.981 12 N -0.308 5.308 13 C -0.377 4.377 14 H 0.087 0.913 15 C -0.195 4.195 16 N -0.553 5.553 17 Si 0.734 3.266 18 H -0.203 1.203 19 H -0.218 1.218 20 H -0.215 1.215 21 C 0.031 3.969 22 C -0.213 4.213 23 C -0.011 4.011 24 O -0.288 6.288 25 C -0.193 4.193 26 C -0.176 4.176 27 C -0.221 4.221 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.241 0.759 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.234 0.766 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.119 0.881 38 H 0.037 0.963 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.081 0.919 46 H 0.118 0.882 47 H 0.116 0.884 48 H 0.106 0.894 49 H 0.105 0.895 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.355 7.742 -3.500 14.994 hybrid contribution 0.860 -1.689 0.234 1.910 sum -11.495 6.052 -3.266 13.395 Atomic orbital electron populations 1.21722 0.92375 1.02335 1.02790 1.20264 0.93657 0.81892 0.90322 1.86386 1.29212 1.25396 1.96703 1.22467 0.93463 1.03708 1.01375 1.20520 0.89636 0.78666 0.81492 1.90594 1.69999 1.46173 1.35658 1.45956 1.08324 1.52911 1.28964 1.21687 0.78579 1.00568 0.99411 1.22214 0.98326 0.97375 0.81991 0.87457 1.20713 0.90988 0.92970 0.93419 1.44104 1.72097 1.15116 0.99505 1.19300 1.19684 0.90859 1.07902 0.91290 1.24919 0.96513 0.97862 1.00190 1.69857 1.23347 1.41287 1.20835 0.86202 0.80118 0.82003 0.78305 1.20338 1.21813 1.21515 1.20384 0.93320 0.95861 0.87305 1.23576 0.99310 1.00188 0.98218 1.22347 0.95607 0.91608 0.91501 1.87514 1.85155 1.31830 1.24344 1.22837 1.05571 0.99132 0.91802 1.22684 0.91233 1.02119 1.01582 1.22977 0.99620 1.02946 0.96568 0.91166 0.92004 0.91565 0.75868 0.88150 0.88359 0.76627 0.90475 0.92067 0.88059 0.96259 0.93552 0.95021 0.94891 0.93181 0.92494 0.93139 0.91896 0.88167 0.88396 0.89450 0.89513 0.88939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 8.61 37.16 0.32 -0.92 16 2 C 0.18 2.04 0.92 -90.62 -0.08 1.96 16 3 O -0.57 -7.52 12.12 -53.00 -0.64 -8.16 16 4 C -0.17 -1.84 4.98 -27.88 -0.14 -1.98 16 5 C 0.51 7.23 7.32 -10.99 -0.08 7.15 16 6 O -0.54 -8.87 11.38 -12.22 -0.14 -9.00 16 7 N -0.71 -10.55 5.41 -60.29 -0.33 -10.88 16 8 C 0.12 2.14 5.25 -4.04 -0.02 2.12 16 9 C 0.06 1.17 1.98 -29.64 -0.06 1.11 16 10 H 0.11 2.38 5.17 -51.93 -0.27 2.12 16 11 C 0.14 3.19 4.71 -4.93 -0.02 3.17 16 12 N -0.59 -13.86 2.61 -174.51 -0.45 -14.32 16 13 C -0.25 -6.37 9.61 -15.06 -0.14 -6.51 16 14 H 0.07 1.78 7.87 -52.49 -0.41 1.37 16 15 C 0.00 0.07 4.93 -17.43 -0.09 -0.01 16 16 N -0.91 -23.26 9.56 55.49 0.53 -22.73 16 17 Si 0.90 20.60 29.59 -169.99 -5.03 15.57 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 21 C 0.16 3.33 5.33 -4.43 -0.02 3.31 16 22 C -0.17 -3.14 6.75 -24.34 -0.16 -3.31 16 23 C 0.07 1.22 6.38 38.32 0.24 1.46 16 24 O -0.37 -7.01 9.44 -31.97 -0.30 -7.31 16 25 C -0.17 -2.07 4.00 -90.62 -0.36 -2.44 16 26 C -0.14 -1.76 7.99 -26.73 -0.21 -1.97 16 27 C -0.18 -2.00 9.73 -26.73 -0.26 -2.26 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.62 7.48 -51.92 -0.39 0.23 16 31 H 0.39 5.36 5.29 45.56 0.24 5.60 16 32 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.40 5.40 8.26 -40.82 -0.34 5.06 16 35 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.10 2.47 6.10 -51.93 -0.32 2.15 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.25 6.44 8.31 -40.82 -0.34 6.10 16 40 H 0.03 0.64 7.98 -51.93 -0.41 0.23 16 41 H 0.03 0.68 7.96 -51.93 -0.41 0.26 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.06 1.29 6.66 -51.93 -0.35 0.94 16 46 H 0.10 1.21 8.11 -51.93 -0.42 0.79 16 47 H 0.10 1.30 6.29 -51.93 -0.33 0.97 16 48 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 49 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 50 H 0.09 0.99 7.67 -51.93 -0.40 0.59 16 LS Contribution 380.76 15.07 5.74 5.74 Total: -1.00 -27.11 380.76 -9.73 -36.84 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: -8.01 Total: 13.37 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -1.10 Total: 0.88 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: -0.25 Total: -47.92 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -1.08 Total: -24.48 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.57 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -27.11 -9.73 -36.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149607405.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.197 kcal (2) G-P(sol) polarization free energy of solvation -27.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds