Wall clock time and date at job start Tue Mar 31 2020 15:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.46869 * 2 1 4 4 C 1.53002 * 109.46678 * 119.99861 * 2 1 3 5 5 C 1.50704 * 109.46722 * 176.95870 * 4 2 1 6 6 O 1.21288 * 119.99835 * 5.36333 * 5 4 2 7 7 N 1.34770 * 120.00055 * 185.36979 * 5 4 2 8 8 C 1.46496 * 120.00205 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47187 * 180.02562 * 8 7 5 10 10 H 1.08995 * 108.57038 * 60.00286 * 9 8 7 11 11 C 1.46924 * 108.61825 * 177.94714 * 9 8 7 12 12 N 1.50109 * 106.78305 * 178.04375 * 11 9 8 13 13 C 1.36934 * 120.75155 * 111.21342 * 12 11 9 14 14 H 1.07998 * 119.99489 * 154.51121 * 13 12 11 15 15 C 1.38808 * 120.00131 * 334.51369 * 13 12 11 16 16 N 1.31615 * 120.00170 * 341.37656 * 15 13 12 17 17 Si 1.86800 * 119.99999 * 161.37889 * 15 13 12 18 18 H 1.48506 * 109.47239 * 359.97438 * 17 15 13 19 19 H 1.48507 * 109.47259 * 119.99921 * 17 15 13 20 20 H 1.48497 * 109.47118 * 239.99871 * 17 15 13 21 21 C 1.43421 * 118.60976 * 291.15348 * 12 11 9 22 22 C 1.55330 * 116.24252 * 89.40537 * 21 12 11 23 23 C 1.55190 * 108.87224 * 319.46611 * 22 21 12 24 24 O 1.39653 * 110.56587 * 322.13943 * 23 22 21 25 25 C 1.53000 * 109.46918 * 239.99733 * 2 1 3 26 26 C 1.53004 * 117.49361 * 128.62552 * 25 2 1 27 27 C 1.53001 * 117.50081 * 60.00379 * 25 2 1 28 28 H 1.09003 * 109.47408 * 174.62411 * 1 2 3 29 29 H 1.08995 * 109.47721 * 294.62563 * 1 2 3 30 30 H 1.09007 * 109.47168 * 54.62804 * 1 2 3 31 31 H 0.96703 * 113.99744 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.47262 * 296.95182 * 4 2 1 33 33 H 1.08993 * 109.47453 * 56.95771 * 4 2 1 34 34 H 0.97003 * 119.99898 * 359.97438 * 7 5 4 35 35 H 1.09006 * 109.47426 * 299.99875 * 8 7 5 36 36 H 1.08998 * 109.47245 * 60.00114 * 8 7 5 37 37 H 1.09002 * 109.98877 * 297.23233 * 11 9 8 38 38 H 1.08997 * 109.99187 * 58.60213 * 11 9 8 39 39 H 0.97000 * 120.00381 * 179.97438 * 16 15 13 40 40 H 1.08994 * 108.12860 * 327.64175 * 21 12 11 41 41 H 1.09007 * 107.96376 * 211.03178 * 21 12 11 42 42 H 1.09001 * 109.57133 * 199.64457 * 22 21 12 43 43 H 1.09003 * 109.56693 * 79.27693 * 22 21 12 44 44 H 1.09004 * 109.25709 * 201.86502 * 23 22 21 45 45 H 1.09001 * 109.26225 * 82.41984 * 23 22 21 46 46 H 1.08995 * 115.56261 * 274.30618 * 25 2 1 47 47 H 1.08993 * 117.50308 * 359.97438 * 26 25 2 48 48 H 1.09004 * 117.49374 * 145.02236 * 26 25 2 49 49 H 1.08999 * 117.49803 * 214.98074 * 27 25 2 50 50 H 1.09004 * 117.49651 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5451 -0.7869 1.2122 6 8 4.1552 -0.2207 0.3300 7 7 4.2131 -1.4747 2.1592 8 6 5.6762 -1.5390 2.1229 9 6 6.1794 -2.3756 3.3010 10 1 5.7615 -3.3788 3.2179 11 6 7.6434 -2.4689 3.2186 12 7 8.0957 -3.2537 4.4156 13 6 8.6195 -4.5107 4.2716 14 1 9.2985 -4.9011 5.0151 15 6 8.2778 -5.2830 3.1699 16 7 7.2036 -4.9897 2.4683 17 14 9.3425 -6.7386 2.6833 18 1 10.4838 -6.8544 3.6264 19 1 8.5324 -7.9823 2.7307 20 1 9.8582 -6.5360 1.3055 21 6 7.9691 -2.6590 5.7145 22 6 6.6268 -2.9071 6.4557 23 6 5.4629 -2.8030 5.4345 24 8 5.7111 -1.7865 4.5096 25 6 2.0400 -0.7213 -1.2492 26 6 3.0742 0.0051 -2.1116 27 6 1.6358 -0.1496 -2.6096 28 1 -0.3634 -1.0231 -0.0963 29 1 -0.3634 0.4282 0.9341 30 1 -0.3634 0.5949 -0.8380 31 1 2.9703 1.4237 -0.0004 32 1 1.7219 -0.1768 2.1384 33 1 1.6327 -1.7319 1.2770 34 1 3.7252 -1.9273 2.8649 35 1 5.9966 -1.9991 1.1880 36 1 6.0860 -0.5313 2.1911 37 1 7.9328 -2.9873 2.3045 38 1 8.0820 -1.4713 3.2374 39 1 6.9650 -5.5291 1.6982 40 1 8.1046 -1.5826 5.6094 41 1 8.7768 -3.0407 6.3392 42 1 6.4963 -2.1570 7.2357 43 1 6.6340 -3.9020 6.9009 44 1 4.5363 -2.5867 5.9662 45 1 5.3611 -3.7517 4.9073 46 1 2.1271 -1.8045 -1.1643 47 1 3.3909 0.9970 -1.7893 48 1 3.8416 -0.6003 -2.5941 49 1 1.4568 -0.8567 -3.4196 50 1 1.0061 0.7402 -2.6146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149607405.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:54 Heat of formation + Delta-G solvation = -96.422548 kcal Electronic energy + Delta-G solvation = -29774.042252 eV Core-core repulsion = 25802.436416 eV Total energy + Delta-G solvation = -3971.605835 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.41046 -40.60734 -39.09264 -36.79165 -35.96933 -35.75710 -33.89907 -33.31059 -32.70698 -30.43715 -29.15094 -27.07326 -26.80996 -24.54547 -23.92270 -23.09533 -22.37955 -21.52615 -21.28601 -20.68346 -18.95550 -18.18541 -17.82801 -17.67253 -17.24041 -16.68347 -16.54898 -16.27200 -16.10926 -15.61829 -15.46969 -15.23729 -14.82246 -14.68288 -14.22939 -14.01057 -13.79029 -13.65269 -13.55864 -13.31175 -13.22194 -13.03991 -12.94938 -12.78125 -12.63208 -12.49938 -12.27168 -12.21141 -11.96618 -11.94061 -11.77810 -11.37846 -11.33993 -11.20371 -11.13739 -10.75325 -10.57990 -10.51795 -10.25293 -9.97414 -8.71120 -7.90866 -5.32522 1.45395 1.50828 1.58096 1.72371 2.28838 2.51267 2.95878 3.12558 3.26997 3.34618 3.51057 3.68626 3.83566 3.87954 4.12618 4.18426 4.21714 4.28326 4.37570 4.42172 4.44467 4.53575 4.59094 4.69269 4.73808 4.78403 4.79606 4.80649 4.83149 4.93168 4.98508 5.01774 5.08378 5.17598 5.18183 5.18706 5.31623 5.32722 5.34185 5.38944 5.41029 5.45403 5.54059 5.67946 6.35998 6.52485 6.63602 6.75984 7.10199 7.34028 7.81952 8.35401 9.15057 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.016038 B = 0.003206 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.481617 B = 8732.541298 C = 9799.247791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.174 3.826 3 O -0.576 6.576 4 C -0.161 4.161 5 C 0.506 3.494 6 O -0.568 6.568 7 N -0.709 5.709 8 C 0.137 3.863 9 C 0.079 3.921 10 H 0.085 0.915 11 C 0.146 3.854 12 N -0.602 5.602 13 C -0.263 4.263 14 H 0.062 0.938 15 C -0.034 4.034 16 N -0.916 5.916 17 Si 0.957 3.043 18 H -0.275 1.275 19 H -0.292 1.292 20 H -0.293 1.293 21 C 0.153 3.847 22 C -0.165 4.165 23 C 0.068 3.932 24 O -0.367 6.367 25 C -0.177 4.177 26 C -0.157 4.157 27 C -0.166 4.166 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.382 0.618 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.408 0.592 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.023 0.977 39 H 0.251 0.749 40 H 0.034 0.966 41 H 0.029 0.971 42 H 0.078 0.922 43 H 0.053 0.947 44 H 0.087 0.913 45 H 0.036 0.964 46 H 0.098 0.902 47 H 0.087 0.913 48 H 0.076 0.924 49 H 0.099 0.901 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.129 7.219 -1.969 15.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.133 3.867 3 O -0.387 6.387 4 C -0.201 4.201 5 C 0.294 3.706 6 O -0.449 6.449 7 N -0.360 5.360 8 C 0.011 3.989 9 C 0.020 3.980 10 H 0.103 0.897 11 C 0.021 3.979 12 N -0.324 5.324 13 C -0.393 4.393 14 H 0.079 0.921 15 C -0.230 4.230 16 N -0.562 5.562 17 Si 0.787 3.213 18 H -0.200 1.200 19 H -0.220 1.220 20 H -0.220 1.220 21 C 0.025 3.975 22 C -0.206 4.206 23 C -0.009 4.009 24 O -0.285 6.285 25 C -0.196 4.196 26 C -0.195 4.195 27 C -0.203 4.203 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.235 0.765 32 H 0.136 0.864 33 H 0.141 0.859 34 H 0.244 0.756 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.041 0.959 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.048 0.952 42 H 0.096 0.904 43 H 0.072 0.928 44 H 0.105 0.895 45 H 0.055 0.945 46 H 0.117 0.883 47 H 0.105 0.895 48 H 0.094 0.906 49 H 0.118 0.882 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.342 7.862 -2.676 16.573 hybrid contribution 1.519 -1.690 0.001 2.272 sum -12.823 6.172 -2.675 14.481 Atomic orbital electron populations 1.21745 0.90344 1.03636 1.03201 1.20516 0.95055 0.81027 0.90136 1.86384 1.28770 1.26790 1.96763 1.22492 0.90357 1.05388 1.01860 1.21179 0.91115 0.77671 0.80595 1.90600 1.70880 1.46935 1.36465 1.45861 1.06985 1.53429 1.29718 1.21282 0.80574 0.99445 0.97571 1.21754 0.96548 0.96623 0.83083 0.89702 1.20641 0.92754 0.92407 0.92107 1.44224 1.72649 1.14709 1.00794 1.19414 1.19969 0.91798 1.08121 0.92060 1.25473 0.97412 0.99858 1.00307 1.69981 1.23847 1.41705 1.20655 0.85369 0.78830 0.79586 0.77513 1.20028 1.21951 1.21992 1.20500 0.94870 0.95698 0.86383 1.23493 0.97583 1.00961 0.98542 1.22398 0.97106 0.90281 0.91143 1.87512 1.84974 1.31921 1.24119 1.22907 1.05023 0.98990 0.92632 1.22602 0.92081 1.01653 1.03116 1.23001 0.97830 1.03086 0.96403 0.89289 0.91142 0.91798 0.76487 0.86439 0.85911 0.75623 0.92315 0.92600 0.90691 0.95909 0.94001 0.94754 0.95213 0.90358 0.92801 0.89501 0.94525 0.88343 0.89494 0.90591 0.88222 0.88551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 8.61 71.98 0.62 -1.43 16 2 C 0.17 3.61 0.92 -10.79 -0.01 3.60 16 3 O -0.58 -14.74 12.12 -131.99 -1.60 -16.34 16 4 C -0.16 -3.09 4.98 29.85 0.15 -2.94 16 5 C 0.51 13.81 7.32 87.66 0.64 14.45 16 6 O -0.57 -18.53 11.38 13.93 0.16 -18.37 16 7 N -0.71 -20.38 5.41 -463.06 -2.51 -22.89 16 8 C 0.14 4.84 5.25 86.38 0.45 5.30 16 9 C 0.08 3.11 1.98 28.71 0.06 3.16 16 10 H 0.09 3.82 5.17 -2.39 -0.01 3.80 16 11 C 0.15 6.57 4.71 83.79 0.39 6.97 16 12 N -0.60 -28.64 2.61 -706.03 -1.84 -30.48 16 13 C -0.26 -13.67 9.61 84.03 0.81 -12.86 16 14 H 0.06 3.21 7.87 -2.91 -0.02 3.19 16 15 C -0.03 -1.75 4.93 84.86 0.42 -1.33 16 16 N -0.92 -47.71 9.56 21.65 0.21 -47.50 16 17 Si 0.96 42.72 29.59 68.60 2.03 44.75 16 18 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 19 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 21 C 0.15 6.28 5.33 87.75 0.47 6.75 16 22 C -0.16 -5.71 6.75 32.15 0.22 -5.49 16 23 C 0.07 2.35 6.38 72.73 0.46 2.81 16 24 O -0.37 -13.37 9.44 -137.32 -1.30 -14.67 16 25 C -0.18 -3.98 4.00 -10.79 -0.04 -4.03 16 26 C -0.16 -3.99 7.99 30.60 0.24 -3.75 16 27 C -0.17 -3.39 9.73 30.60 0.30 -3.09 16 28 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 1.03 7.48 -2.38 -0.02 1.01 16 31 H 0.38 10.58 5.29 -74.06 -0.39 10.18 16 32 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.41 10.33 8.26 -92.71 -0.77 9.57 16 35 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 36 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.07 3.78 6.10 -2.39 -0.01 3.77 16 38 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.25 12.86 8.31 -92.71 -0.77 12.09 16 40 H 0.03 1.36 7.98 -2.39 -0.02 1.34 16 41 H 0.03 1.21 7.96 -2.38 -0.02 1.19 16 42 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 45 H 0.04 1.47 6.66 -2.39 -0.02 1.45 16 46 H 0.10 2.24 8.11 -2.39 -0.02 2.23 16 47 H 0.09 2.38 6.29 -2.39 -0.02 2.36 16 48 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 49 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 50 H 0.10 1.90 7.67 -2.38 -0.02 1.88 16 Total: -1.00 -58.41 380.76 0.12 -58.30 By element: Atomic # 1 Polarization: 39.32 SS G_CDS: -0.21 Total: 39.11 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 5.18 Total: 8.10 kcal Atomic # 7 Polarization: -96.74 SS G_CDS: -4.14 Total: -100.88 kcal Atomic # 8 Polarization: -46.64 SS G_CDS: -2.74 Total: -49.38 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -58.41 0.12 -58.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149607405.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.127 kcal (2) G-P(sol) polarization free energy of solvation -58.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds