Wall clock time and date at job start Tue Mar 31 2020 15:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42892 * 109.47509 * 2 1 4 4 C 1.52997 * 109.46758 * 239.99362 * 2 1 3 5 5 C 1.50698 * 109.47138 * 60.00844 * 4 2 1 6 6 O 1.21279 * 119.99989 * 359.97438 * 5 4 2 7 7 N 1.34778 * 120.00217 * 179.97438 * 5 4 2 8 8 C 1.46498 * 120.00195 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.47303 * 180.02562 * 8 7 5 10 10 H 1.09001 * 108.56710 * 60.00452 * 9 8 7 11 11 C 1.46920 * 108.61930 * 177.94617 * 9 8 7 12 12 N 1.50109 * 106.78144 * 178.04338 * 11 9 8 13 13 C 1.36939 * 120.74706 * 111.22973 * 12 11 9 14 14 H 1.08001 * 119.99382 * 155.67074 * 13 12 11 15 15 C 1.38806 * 120.00129 * 335.67523 * 13 12 11 16 16 N 1.31612 * 120.00413 * 340.85861 * 15 13 12 17 17 Si 1.86806 * 119.99853 * 160.86142 * 15 13 12 18 18 H 1.48500 * 109.46889 * 59.99653 * 17 15 13 19 19 H 1.48494 * 109.46989 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46946 * 299.99706 * 17 15 13 21 21 C 1.43424 * 118.61319 * 291.15484 * 12 11 9 22 22 C 1.55321 * 116.23867 * 89.40335 * 21 12 11 23 23 C 1.55185 * 108.87544 * 319.46543 * 22 21 12 24 24 O 1.39645 * 110.57206 * 322.14175 * 23 22 21 25 25 C 1.52995 * 109.46771 * 120.00039 * 2 1 3 26 26 C 1.53007 * 117.50330 * 13.61896 * 25 2 1 27 27 C 1.53001 * 117.50024 * 304.99360 * 25 2 1 28 28 H 1.09002 * 109.46654 * 60.00123 * 1 2 3 29 29 H 1.09000 * 109.47574 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47219 * 300.00763 * 1 2 3 31 31 H 0.96699 * 114.00363 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46962 * 180.02562 * 4 2 1 33 33 H 1.08999 * 109.47956 * 300.00611 * 4 2 1 34 34 H 0.97006 * 120.00097 * 0.02562 * 7 5 4 35 35 H 1.09001 * 109.47306 * 300.00028 * 8 7 5 36 36 H 1.09003 * 109.47251 * 60.00079 * 8 7 5 37 37 H 1.09000 * 109.99071 * 297.23351 * 11 9 8 38 38 H 1.08998 * 109.99093 * 58.60062 * 11 9 8 39 39 H 0.97004 * 120.00603 * 180.02562 * 16 15 13 40 40 H 1.09000 * 108.12477 * 327.64896 * 21 12 11 41 41 H 1.09003 * 108.12182 * 211.16598 * 21 12 11 42 42 H 1.09005 * 109.57265 * 199.64684 * 22 21 12 43 43 H 1.09007 * 109.56713 * 79.28158 * 22 21 12 44 44 H 1.09006 * 109.25698 * 201.85994 * 23 22 21 45 45 H 1.09009 * 109.25937 * 82.42598 * 23 22 21 46 46 H 1.09003 * 115.55092 * 159.32591 * 25 2 1 47 47 H 1.08996 * 117.49495 * 359.97438 * 26 25 2 48 48 H 1.08995 * 117.49888 * 145.02207 * 26 25 2 49 49 H 1.09003 * 117.50321 * 214.98158 * 27 25 2 50 50 H 1.09004 * 117.49441 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 8 0.8402 0.9749 -2.3685 7 7 1.8637 -0.4712 -3.7038 8 6 1.3750 0.2190 -4.9000 9 6 1.8850 -0.5023 -6.1492 10 1 1.5138 -1.5270 -6.1342 11 6 1.3443 0.1751 -7.3356 12 7 1.9073 -0.5333 -8.5333 13 6 1.0998 -1.2812 -9.3480 14 1 1.3828 -1.4561 -10.3754 15 6 -0.0824 -1.8144 -8.8532 16 7 -0.2566 -1.9363 -7.5544 17 14 -1.4262 -2.3591 -10.0309 18 1 -0.9000 -3.4215 -10.9252 19 1 -2.5774 -2.8893 -9.2572 20 1 -1.8692 -1.2000 -10.8467 21 6 3.3095 -0.4093 -8.8083 22 6 4.2354 -1.4652 -8.1448 23 6 3.7457 -1.7220 -6.6949 24 8 3.3078 -0.5334 -6.1071 25 6 2.0399 -0.7213 1.2492 26 6 1.0318 -1.5509 2.0471 27 6 1.5416 -0.2212 2.6066 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 2.9704 1.4235 -0.0004 32 1 3.1300 -0.7218 -1.2490 33 1 1.6765 -1.7490 -1.2492 34 1 2.4212 -1.2600 -3.7928 35 1 0.2850 0.2184 -4.9001 36 1 1.7377 1.2469 -4.9000 37 1 0.2566 0.1054 -7.3411 38 1 1.6518 1.2208 -7.3401 39 1 -1.0826 -2.3093 -7.2086 40 1 3.6331 0.5788 -8.4813 41 1 3.4495 -0.4658 -9.8879 42 1 5.2591 -1.0913 -8.1236 43 1 4.1958 -2.3943 -8.7136 44 1 4.5655 -2.1335 -6.1061 45 1 2.9235 -2.4376 -6.7145 46 1 3.0641 -1.0902 1.1939 47 1 0.0052 -1.5825 1.6822 48 1 1.3927 -2.4659 2.5167 49 1 2.2377 -0.2615 3.4444 50 1 0.8507 0.6220 2.6096 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149607415.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:10 Heat of formation + Delta-G solvation = -73.222586 kcal Electronic energy + Delta-G solvation = -29454.428101 eV Core-core repulsion = 25483.828292 eV Total energy + Delta-G solvation = -3970.599809 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.16488 -39.12548 -38.20222 -35.54851 -35.01088 -34.40155 -32.24911 -31.71575 -31.08864 -28.87001 -27.83230 -25.45604 -25.28812 -23.93518 -22.62015 -22.41477 -20.77717 -20.02610 -19.69386 -19.58631 -17.42066 -17.04649 -16.29333 -16.26483 -15.97500 -15.43958 -15.16957 -14.91726 -14.57104 -14.30518 -14.10819 -13.92667 -13.75637 -13.14335 -13.05217 -12.88881 -12.67426 -12.45763 -12.36430 -11.95017 -11.81294 -11.66548 -11.41810 -11.31688 -11.16247 -10.96232 -10.84187 -10.74564 -10.69635 -10.50713 -10.37950 -10.17851 -10.03043 -9.97387 -9.69482 -9.51875 -9.30499 -8.80711 -8.57871 -8.50664 -6.83377 -5.93453 -3.32134 2.97808 3.32878 3.38513 3.39564 3.41697 3.59038 4.34580 4.37862 4.42636 4.56940 4.69756 4.75899 4.80950 4.93264 5.12653 5.23405 5.27126 5.27465 5.38880 5.47386 5.59678 5.68658 5.72297 5.79314 5.80376 5.87366 5.91353 5.95414 6.02709 6.05599 6.14681 6.32321 6.41463 6.44091 6.49053 6.61938 6.65820 6.71439 6.81003 6.93668 6.98382 7.11720 7.32241 7.70139 7.70817 7.89853 8.12758 8.30969 8.61368 9.05774 9.73908 10.28446 11.15626 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.017662 B = 0.002885 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.951655 B = 9703.409966 C =10538.585399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.183 3.817 3 O -0.537 6.537 4 C -0.167 4.167 5 C 0.508 3.492 6 O -0.527 6.527 7 N -0.718 5.718 8 C 0.123 3.877 9 C 0.061 3.939 10 H 0.106 0.894 11 C 0.143 3.857 12 N -0.588 5.588 13 C -0.249 4.249 14 H 0.069 0.931 15 C 0.002 3.998 16 N -0.908 5.908 17 Si 0.904 3.096 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.284 1.284 21 C 0.161 3.839 22 C -0.172 4.172 23 C 0.068 3.932 24 O -0.370 6.370 25 C -0.189 4.189 26 C -0.178 4.178 27 C -0.166 4.166 28 H 0.095 0.905 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.367 0.633 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.398 0.602 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.104 0.896 38 H 0.019 0.981 39 H 0.256 0.744 40 H 0.031 0.969 41 H 0.032 0.968 42 H 0.049 0.951 43 H 0.056 0.944 44 H 0.050 0.950 45 H 0.062 0.938 46 H 0.104 0.896 47 H 0.103 0.897 48 H 0.092 0.908 49 H 0.091 0.909 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.347 -0.830 15.750 17.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.141 3.859 3 O -0.341 6.341 4 C -0.208 4.208 5 C 0.294 3.706 6 O -0.404 6.404 7 N -0.368 5.368 8 C -0.002 4.002 9 C 0.002 3.998 10 H 0.124 0.876 11 C 0.018 3.982 12 N -0.308 5.308 13 C -0.379 4.379 14 H 0.087 0.913 15 C -0.195 4.195 16 N -0.553 5.553 17 Si 0.734 3.266 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.211 1.211 21 C 0.032 3.968 22 C -0.213 4.213 23 C -0.010 4.010 24 O -0.288 6.288 25 C -0.207 4.207 26 C -0.215 4.215 27 C -0.203 4.203 28 H 0.114 0.886 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.213 0.787 32 H 0.110 0.890 33 H 0.117 0.883 34 H 0.231 0.769 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.122 0.878 38 H 0.037 0.963 39 H 0.066 0.934 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.122 0.878 47 H 0.121 0.879 48 H 0.111 0.889 49 H 0.110 0.890 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.132 0.118 15.940 16.746 hybrid contribution 0.305 -1.360 -0.734 1.575 sum 5.437 -1.242 15.205 16.196 Atomic orbital electron populations 1.22113 0.92438 1.01921 1.04777 1.20250 0.95101 0.81521 0.89000 1.86713 1.25604 1.25076 1.96728 1.22404 1.02588 1.01608 0.94182 1.20331 0.80956 0.84932 0.84402 1.90661 1.37470 1.25931 1.86348 1.45968 1.53272 1.31928 1.05666 1.21657 0.99152 0.96155 0.83211 1.22193 0.80062 1.03810 0.93696 0.87607 1.20749 1.00946 0.91565 0.84962 1.44097 1.01721 1.55330 1.29650 1.19220 1.01371 1.25285 0.91985 0.91347 1.24895 1.00133 0.98779 0.95725 1.69851 1.26246 1.48367 1.10833 0.86332 0.81601 0.78353 0.80268 1.21051 1.21628 1.21072 1.20368 0.84638 0.95182 0.96653 1.23580 0.99029 1.01477 0.97235 1.22339 0.98504 0.87349 0.92841 1.87513 1.21611 1.40581 1.79132 1.23070 0.99410 1.04756 0.93487 1.23127 0.99711 0.95040 1.03616 1.22863 1.03745 0.97996 0.95672 0.88648 0.91735 0.92422 0.78690 0.89033 0.88276 0.76858 0.90558 0.92166 0.87837 0.96260 0.93424 0.95043 0.94928 0.93202 0.92513 0.93185 0.91944 0.87820 0.87854 0.88920 0.89027 0.88343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 7.18 37.16 0.27 -1.65 16 2 C 0.18 2.03 0.80 -90.62 -0.07 1.96 16 3 O -0.54 -6.87 11.85 -53.48 -0.63 -7.50 16 4 C -0.17 -1.81 4.95 -27.89 -0.14 -1.95 16 5 C 0.51 7.74 7.39 -10.99 -0.08 7.66 16 6 O -0.53 -9.93 12.96 -12.69 -0.16 -10.10 16 7 N -0.72 -11.17 5.41 -60.29 -0.33 -11.50 16 8 C 0.12 2.25 5.25 -4.04 -0.02 2.23 16 9 C 0.06 1.23 1.98 -29.64 -0.06 1.17 16 10 H 0.11 2.39 5.24 -51.93 -0.27 2.12 16 11 C 0.14 3.22 4.71 -4.94 -0.02 3.20 16 12 N -0.59 -14.02 2.61 -174.51 -0.46 -14.48 16 13 C -0.25 -6.46 9.62 -15.06 -0.14 -6.60 16 14 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 15 C 0.00 0.06 4.93 -17.44 -0.09 -0.02 16 16 N -0.91 -23.51 9.57 55.49 0.53 -22.98 16 17 Si 0.90 20.79 29.60 -169.99 -5.03 15.75 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 21 C 0.16 3.37 5.32 -4.44 -0.02 3.35 16 22 C -0.17 -3.17 6.75 -24.34 -0.16 -3.34 16 23 C 0.07 1.24 6.38 38.31 0.24 1.48 16 24 O -0.37 -7.12 9.44 -31.95 -0.30 -7.42 16 25 C -0.19 -1.64 5.32 -90.62 -0.48 -2.12 16 26 C -0.18 -1.42 9.65 -26.72 -0.26 -1.68 16 27 C -0.17 -1.39 9.85 -26.73 -0.26 -1.65 16 28 H 0.09 1.49 5.51 -51.93 -0.29 1.21 16 29 H 0.06 0.68 6.74 -51.93 -0.35 0.33 16 30 H 0.06 0.68 6.96 -51.93 -0.36 0.31 16 31 H 0.37 3.37 9.05 45.56 0.41 3.78 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.40 5.54 8.26 -40.82 -0.34 5.20 16 35 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.10 2.57 6.03 -51.93 -0.31 2.26 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 40 H 0.03 0.65 7.98 -51.93 -0.41 0.23 16 41 H 0.03 0.67 7.96 -51.93 -0.41 0.26 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 44 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 1.29 6.66 -51.92 -0.35 0.94 16 46 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.10 0.84 5.89 -51.93 -0.31 0.54 16 48 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.10 0.92 7.29 -51.93 -0.38 0.54 16 LS Contribution 382.15 15.07 5.76 5.76 Total: -1.00 -29.42 382.15 -9.49 -38.92 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -7.56 Total: 11.52 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -1.31 Total: 2.03 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: -0.25 Total: -48.95 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -1.10 Total: -25.02 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.42 -9.49 -38.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149607415.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.304 kcal (2) G-P(sol) polarization free energy of solvation -29.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds