Wall clock time and date at job start Tue Mar 31 2020 15:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42892 * 109.47509 * 2 1 4 4 C 1.52997 * 109.46758 * 239.99362 * 2 1 3 5 5 C 1.50698 * 109.47138 * 60.00844 * 4 2 1 6 6 O 1.21279 * 119.99989 * 359.97438 * 5 4 2 7 7 N 1.34778 * 120.00217 * 179.97438 * 5 4 2 8 8 C 1.46498 * 120.00195 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.47303 * 180.02562 * 8 7 5 10 10 H 1.09001 * 108.56710 * 60.00452 * 9 8 7 11 11 C 1.46920 * 108.61930 * 177.94617 * 9 8 7 12 12 N 1.50109 * 106.78144 * 178.04338 * 11 9 8 13 13 C 1.36939 * 120.74706 * 111.22973 * 12 11 9 14 14 H 1.08001 * 119.99382 * 155.67074 * 13 12 11 15 15 C 1.38806 * 120.00129 * 335.67523 * 13 12 11 16 16 N 1.31612 * 120.00413 * 340.85861 * 15 13 12 17 17 Si 1.86806 * 119.99853 * 160.86142 * 15 13 12 18 18 H 1.48500 * 109.46889 * 59.99653 * 17 15 13 19 19 H 1.48494 * 109.46989 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46946 * 299.99706 * 17 15 13 21 21 C 1.43424 * 118.61319 * 291.15484 * 12 11 9 22 22 C 1.55321 * 116.23867 * 89.40335 * 21 12 11 23 23 C 1.55185 * 108.87544 * 319.46543 * 22 21 12 24 24 O 1.39645 * 110.57206 * 322.14175 * 23 22 21 25 25 C 1.52995 * 109.46771 * 120.00039 * 2 1 3 26 26 C 1.53007 * 117.50330 * 13.61896 * 25 2 1 27 27 C 1.53001 * 117.50024 * 304.99360 * 25 2 1 28 28 H 1.09002 * 109.46654 * 60.00123 * 1 2 3 29 29 H 1.09000 * 109.47574 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47219 * 300.00763 * 1 2 3 31 31 H 0.96699 * 114.00363 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46962 * 180.02562 * 4 2 1 33 33 H 1.08999 * 109.47956 * 300.00611 * 4 2 1 34 34 H 0.97006 * 120.00097 * 0.02562 * 7 5 4 35 35 H 1.09001 * 109.47306 * 300.00028 * 8 7 5 36 36 H 1.09003 * 109.47251 * 60.00079 * 8 7 5 37 37 H 1.09000 * 109.99071 * 297.23351 * 11 9 8 38 38 H 1.08998 * 109.99093 * 58.60062 * 11 9 8 39 39 H 0.97004 * 120.00603 * 180.02562 * 16 15 13 40 40 H 1.09000 * 108.12477 * 327.64896 * 21 12 11 41 41 H 1.09003 * 108.12182 * 211.16598 * 21 12 11 42 42 H 1.09005 * 109.57265 * 199.64684 * 22 21 12 43 43 H 1.09007 * 109.56713 * 79.28158 * 22 21 12 44 44 H 1.09006 * 109.25698 * 201.85994 * 23 22 21 45 45 H 1.09009 * 109.25937 * 82.42598 * 23 22 21 46 46 H 1.09003 * 115.55092 * 159.32591 * 25 2 1 47 47 H 1.08996 * 117.49495 * 359.97438 * 26 25 2 48 48 H 1.08995 * 117.49888 * 145.02207 * 26 25 2 49 49 H 1.09003 * 117.50321 * 214.98158 * 27 25 2 50 50 H 1.09004 * 117.49441 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 8 0.8402 0.9749 -2.3685 7 7 1.8637 -0.4712 -3.7038 8 6 1.3750 0.2190 -4.9000 9 6 1.8850 -0.5023 -6.1492 10 1 1.5138 -1.5270 -6.1342 11 6 1.3443 0.1751 -7.3356 12 7 1.9073 -0.5333 -8.5333 13 6 1.0998 -1.2812 -9.3480 14 1 1.3828 -1.4561 -10.3754 15 6 -0.0824 -1.8144 -8.8532 16 7 -0.2566 -1.9363 -7.5544 17 14 -1.4262 -2.3591 -10.0309 18 1 -0.9000 -3.4215 -10.9252 19 1 -2.5774 -2.8893 -9.2572 20 1 -1.8692 -1.2000 -10.8467 21 6 3.3095 -0.4093 -8.8083 22 6 4.2354 -1.4652 -8.1448 23 6 3.7457 -1.7220 -6.6949 24 8 3.3078 -0.5334 -6.1071 25 6 2.0399 -0.7213 1.2492 26 6 1.0318 -1.5509 2.0471 27 6 1.5416 -0.2212 2.6066 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 2.9704 1.4235 -0.0004 32 1 3.1300 -0.7218 -1.2490 33 1 1.6765 -1.7490 -1.2492 34 1 2.4212 -1.2600 -3.7928 35 1 0.2850 0.2184 -4.9001 36 1 1.7377 1.2469 -4.9000 37 1 0.2566 0.1054 -7.3411 38 1 1.6518 1.2208 -7.3401 39 1 -1.0826 -2.3093 -7.2086 40 1 3.6331 0.5788 -8.4813 41 1 3.4495 -0.4658 -9.8879 42 1 5.2591 -1.0913 -8.1236 43 1 4.1958 -2.3943 -8.7136 44 1 4.5655 -2.1335 -6.1061 45 1 2.9235 -2.4376 -6.7145 46 1 3.0641 -1.0902 1.1939 47 1 0.0052 -1.5825 1.6822 48 1 1.3927 -2.4659 2.5167 49 1 2.2377 -0.2615 3.4444 50 1 0.8507 0.6220 2.6096 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149607415.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:09 Heat of formation + Delta-G solvation = -92.647117 kcal Electronic energy + Delta-G solvation = -29455.270412 eV Core-core repulsion = 25483.828292 eV Total energy + Delta-G solvation = -3971.442120 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.28884 -40.57068 -39.28466 -36.79721 -36.36898 -35.80358 -33.85505 -33.09047 -32.46772 -30.39466 -29.00808 -27.06601 -26.90218 -24.98227 -23.99026 -23.19590 -22.37603 -21.36462 -21.17326 -20.53669 -18.95309 -18.32903 -17.70991 -17.37083 -17.18161 -16.71810 -16.47789 -16.30012 -16.16871 -15.59000 -15.43017 -15.32654 -14.96889 -14.77091 -14.22094 -14.12194 -13.95949 -13.90364 -13.55618 -13.30398 -13.28129 -12.99751 -12.74161 -12.65044 -12.54903 -12.47358 -12.31033 -12.04341 -11.92867 -11.79838 -11.74400 -11.38061 -11.37367 -11.18201 -11.06018 -10.91559 -10.56402 -10.49946 -10.23557 -9.94222 -8.71912 -7.89675 -5.30383 1.47762 1.51713 1.56551 1.79309 2.28183 2.52193 2.84268 3.12772 3.27618 3.50103 3.55899 3.62345 3.72186 4.01412 4.08315 4.16920 4.20631 4.27137 4.34374 4.38725 4.40462 4.44675 4.57732 4.63294 4.74014 4.78762 4.79898 4.80188 4.85884 4.94911 5.00147 5.03570 5.06659 5.08576 5.18479 5.19149 5.29175 5.31676 5.34812 5.40362 5.43068 5.49542 5.62554 5.67920 6.36080 6.52915 6.69434 6.98612 7.10514 7.41609 7.82863 8.36109 9.16113 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.017662 B = 0.002885 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.951655 B = 9703.409966 C =10538.585399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.180 3.820 3 O -0.563 6.563 4 C -0.157 4.157 5 C 0.504 3.496 6 O -0.567 6.567 7 N -0.713 5.713 8 C 0.136 3.864 9 C 0.082 3.918 10 H 0.085 0.915 11 C 0.144 3.856 12 N -0.602 5.602 13 C -0.265 4.265 14 H 0.063 0.937 15 C -0.036 4.036 16 N -0.917 5.917 17 Si 0.959 3.041 18 H -0.280 1.280 19 H -0.294 1.294 20 H -0.287 1.287 21 C 0.153 3.847 22 C -0.165 4.165 23 C 0.068 3.932 24 O -0.367 6.367 25 C -0.185 4.185 26 C -0.174 4.174 27 C -0.171 4.171 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.381 0.619 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.408 0.592 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.077 0.923 38 H 0.022 0.978 39 H 0.251 0.749 40 H 0.033 0.967 41 H 0.030 0.970 42 H 0.078 0.922 43 H 0.054 0.946 44 H 0.088 0.912 45 H 0.036 0.964 46 H 0.125 0.875 47 H 0.097 0.903 48 H 0.110 0.890 49 H 0.106 0.894 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.322 -2.227 17.025 19.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.139 3.861 3 O -0.370 6.370 4 C -0.197 4.197 5 C 0.292 3.708 6 O -0.447 6.447 7 N -0.364 5.364 8 C 0.010 3.990 9 C 0.023 3.977 10 H 0.103 0.897 11 C 0.019 3.981 12 N -0.323 5.323 13 C -0.394 4.394 14 H 0.081 0.919 15 C -0.232 4.232 16 N -0.562 5.562 17 Si 0.788 3.212 18 H -0.206 1.206 19 H -0.220 1.220 20 H -0.213 1.213 21 C 0.025 3.975 22 C -0.206 4.206 23 C -0.010 4.010 24 O -0.285 6.285 25 C -0.203 4.203 26 C -0.211 4.211 27 C -0.208 4.208 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.229 0.771 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.244 0.756 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.040 0.960 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.048 0.952 42 H 0.097 0.903 43 H 0.073 0.927 44 H 0.106 0.894 45 H 0.054 0.946 46 H 0.143 0.857 47 H 0.116 0.884 48 H 0.128 0.872 49 H 0.125 0.875 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.152 -1.295 17.217 18.689 hybrid contribution -0.304 -0.861 -1.162 1.478 sum 6.849 -2.157 16.055 17.587 Atomic orbital electron populations 1.22091 0.94054 1.02342 1.02796 1.20286 0.94052 0.81312 0.90416 1.86682 1.27085 1.26337 1.96884 1.22433 1.04337 1.01753 0.91180 1.21171 0.79945 0.84487 0.85209 1.90663 1.39155 1.27938 1.86900 1.45881 1.53398 1.32106 1.05043 1.21262 0.97860 0.95804 0.84033 1.21717 0.80582 1.02139 0.93268 0.89740 1.20670 0.99539 0.91920 0.85979 1.44210 1.02879 1.55347 1.29885 1.19365 1.02292 1.25599 0.92179 0.91921 1.25471 1.01504 0.99289 0.96968 1.69980 1.26023 1.48575 1.11630 0.85481 0.79315 0.77767 0.78620 1.20601 1.21978 1.21327 1.20492 0.83767 0.96276 0.96932 1.23494 0.99732 1.00456 0.96899 1.22405 0.98715 0.86367 0.93465 1.87511 1.20630 1.41224 1.79132 1.22973 1.00474 1.04761 0.92093 1.23198 0.99345 0.95462 1.03079 1.22889 1.03903 0.97823 0.96140 0.92348 0.90154 0.92564 0.77085 0.85942 0.86158 0.75604 0.92593 0.92991 0.90497 0.96027 0.93977 0.94840 0.95153 0.90303 0.92744 0.89363 0.94557 0.85687 0.88438 0.87193 0.87538 0.89952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.83 7.18 71.98 0.52 -3.31 16 2 C 0.18 3.71 0.80 -10.80 -0.01 3.70 16 3 O -0.56 -13.93 11.85 -131.53 -1.56 -15.49 16 4 C -0.16 -3.00 4.95 29.85 0.15 -2.85 16 5 C 0.50 15.00 7.39 87.66 0.65 15.65 16 6 O -0.57 -21.84 12.96 14.43 0.19 -21.65 16 7 N -0.71 -21.67 5.41 -463.06 -2.51 -24.18 16 8 C 0.14 5.09 5.25 86.38 0.45 5.55 16 9 C 0.08 3.31 1.98 28.71 0.06 3.37 16 10 H 0.08 3.87 5.24 -2.39 -0.01 3.85 16 11 C 0.14 6.64 4.71 83.79 0.39 7.03 16 12 N -0.60 -28.97 2.61 -706.04 -1.84 -30.81 16 13 C -0.26 -13.86 9.62 84.03 0.81 -13.05 16 14 H 0.06 3.28 7.88 -2.91 -0.02 3.26 16 15 C -0.04 -1.87 4.93 84.86 0.42 -1.45 16 16 N -0.92 -48.38 9.57 21.65 0.21 -48.17 16 17 Si 0.96 43.13 29.60 68.60 2.03 45.16 16 18 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 19 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 20 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 21 C 0.15 6.33 5.32 87.75 0.47 6.79 16 22 C -0.16 -5.73 6.75 32.14 0.22 -5.51 16 23 C 0.07 2.35 6.38 72.73 0.46 2.81 16 24 O -0.37 -13.56 9.44 -137.24 -1.30 -14.86 16 25 C -0.18 -2.67 5.32 -10.79 -0.06 -2.73 16 26 C -0.17 -2.32 9.65 30.60 0.30 -2.02 16 27 C -0.17 -2.51 9.85 30.60 0.30 -2.21 16 28 H 0.06 1.90 5.51 -2.39 -0.01 1.88 16 29 H 0.08 1.63 6.74 -2.39 -0.02 1.62 16 30 H 0.06 1.34 6.96 -2.39 -0.02 1.32 16 31 H 0.38 6.40 9.05 -74.06 -0.67 5.73 16 32 H 0.12 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.41 10.65 8.26 -92.70 -0.77 9.89 16 35 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.08 3.97 6.03 -2.39 -0.01 3.95 16 38 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.25 13.12 8.31 -92.71 -0.77 12.35 16 40 H 0.03 1.34 7.98 -2.39 -0.02 1.33 16 41 H 0.03 1.24 7.96 -2.39 -0.02 1.22 16 42 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 43 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 44 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 45 H 0.04 1.46 6.66 -2.38 -0.02 1.45 16 46 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.10 1.41 5.89 -2.39 -0.01 1.40 16 48 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 50 H 0.08 1.48 7.29 -2.39 -0.02 1.46 16 Total: -1.00 -64.90 382.15 -0.14 -65.04 By element: Atomic # 1 Polarization: 33.67 SS G_CDS: -0.48 Total: 33.19 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 5.12 Total: 11.77 kcal Atomic # 7 Polarization: -99.02 SS G_CDS: -4.14 Total: -103.16 kcal Atomic # 8 Polarization: -49.33 SS G_CDS: -2.67 Total: -52.00 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -64.90 -0.14 -65.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149607415.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.607 kcal (2) G-P(sol) polarization free energy of solvation -64.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds