Wall clock time and date at job start Tue Mar 31 2020 15:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.46972 * 2 1 4 4 C 1.53007 * 109.47144 * 179.97438 * 3 2 1 5 5 O 1.45203 * 109.47046 * 180.02562 * 4 3 2 6 6 C 1.34641 * 116.99751 * 180.02562 * 5 4 3 7 7 O 1.21513 * 119.99735 * 359.97438 * 6 5 4 8 8 N 1.34768 * 119.99891 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00056 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.47049 * 324.99889 * 9 8 6 11 11 C 1.50706 * 109.47187 * 205.00100 * 9 8 6 12 12 O 1.21282 * 119.99865 * 359.97438 * 11 9 8 13 13 N 1.34774 * 120.00164 * 179.97438 * 11 9 8 14 14 C 1.46496 * 120.00140 * 179.97438 * 13 11 9 15 15 C 1.52997 * 109.47079 * 180.02562 * 14 13 11 16 16 C 1.53006 * 109.47164 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.47180 * 179.97438 * 16 15 14 18 18 H 1.07995 * 119.99918 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99755 * 179.97438 * 17 16 15 20 20 N 1.31508 * 119.99915 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99825 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47419 * 89.99702 * 21 19 17 23 23 H 1.48499 * 109.47011 * 210.00264 * 21 19 17 24 24 H 1.48506 * 109.46838 * 329.99551 * 21 19 17 25 25 C 1.52997 * 109.47473 * 84.99704 * 9 8 6 26 26 C 1.52998 * 117.49757 * 8.75024 * 25 9 8 27 27 C 1.53003 * 117.49978 * 300.08838 * 25 9 8 28 28 H 1.08999 * 109.47142 * 299.99700 * 1 2 3 29 29 H 1.09001 * 109.46781 * 60.00485 * 1 2 3 30 30 H 1.09002 * 109.46802 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47482 * 239.99889 * 2 1 3 32 32 H 1.08999 * 109.47149 * 120.00191 * 2 1 3 33 33 H 1.09006 * 109.47330 * 60.00239 * 3 2 1 34 34 H 1.09001 * 109.47476 * 299.99552 * 3 2 1 35 35 H 1.08999 * 109.46699 * 60.00466 * 4 3 2 36 36 H 1.08999 * 109.47420 * 300.00462 * 4 3 2 37 37 H 0.97001 * 120.00396 * 0.02562 * 8 6 5 38 38 H 0.97005 * 119.99795 * 0.02562 * 13 11 9 39 39 H 1.08992 * 109.47635 * 300.00509 * 14 13 11 40 40 H 1.09000 * 109.46684 * 60.00301 * 14 13 11 41 41 H 1.08998 * 109.47624 * 300.00083 * 15 14 13 42 42 H 1.08996 * 109.47497 * 60.00236 * 15 14 13 43 43 H 1.09001 * 109.47002 * 300.00262 * 16 15 14 44 44 H 1.09000 * 109.47050 * 59.99996 * 16 15 14 45 45 H 0.97001 * 119.99839 * 180.02562 * 20 19 17 46 46 H 1.09001 * 115.55272 * 154.41725 * 25 9 8 47 47 H 1.09004 * 117.50171 * 359.97438 * 26 25 9 48 48 H 1.09001 * 117.50114 * 145.02267 * 26 25 9 49 49 H 1.08997 * 117.49922 * 214.97679 * 27 25 9 50 50 H 1.08996 * 117.49497 * 359.97438 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0540 2.8115 0.0013 6 6 5.3888 2.9879 0.0013 7 8 6.1289 2.0242 0.0014 8 7 5.9038 4.2333 0.0024 9 6 7.3562 4.4253 0.0019 10 1 7.8270 3.6377 0.5903 11 6 7.6858 5.7671 0.6037 12 8 6.7951 6.4919 0.9941 13 7 8.9702 6.1617 0.7081 14 6 9.2905 7.4663 1.2925 15 6 10.8073 7.6667 1.2921 16 6 11.1419 9.0290 1.9031 17 6 12.6360 9.2262 1.9033 18 1 13.2822 8.4570 1.5069 19 6 13.1778 10.3890 2.4086 20 7 12.3908 11.3258 2.8909 21 14 15.0297 10.6337 2.4082 22 1 15.4426 11.2860 1.1397 23 1 15.4156 11.4938 3.5556 24 1 15.7031 9.3157 2.5292 25 6 7.8777 4.3690 -1.4353 26 6 6.8427 4.3429 -2.5618 27 6 7.6384 3.0797 -2.2237 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9336 0.9286 -0.8892 36 1 3.9330 0.9288 0.8908 37 1 5.3130 5.0026 0.0035 38 1 9.6826 5.5822 0.3955 39 1 8.8202 8.2537 0.7037 40 1 8.9186 7.5069 2.3163 41 1 11.2781 6.8794 1.8809 42 1 11.1789 7.6263 0.2683 43 1 10.6711 9.8166 1.3148 44 1 10.7704 9.0691 2.9271 45 1 12.7720 12.1440 3.2461 46 1 8.8083 4.9059 -1.6192 47 1 5.7902 4.3655 -2.2790 48 1 7.0925 4.8624 -3.4869 49 1 8.4113 2.7687 -2.9264 50 1 7.1098 2.2715 -1.7182 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186302195.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:18 Heat of formation + Delta-G solvation = -119.356702 kcal Electronic energy + Delta-G solvation = -27246.787172 eV Core-core repulsion = 23274.186837 eV Total energy + Delta-G solvation = -3972.600335 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.17928 -39.81869 -37.99443 -36.64384 -35.61492 -35.36413 -34.15626 -33.39257 -31.42365 -30.10233 -28.72967 -26.41998 -24.28099 -23.15698 -22.61174 -22.07981 -21.65189 -21.22071 -20.62715 -20.00160 -19.09036 -17.51881 -17.20779 -16.88775 -16.40530 -16.10801 -15.93414 -15.42929 -15.19864 -14.76918 -14.51783 -14.44835 -14.35662 -13.85988 -13.81521 -13.50872 -13.11842 -12.59536 -12.34432 -12.31594 -12.29144 -11.88659 -11.82525 -11.72869 -11.67273 -11.57674 -11.24598 -10.94281 -10.92871 -10.86522 -10.77075 -10.74073 -10.61274 -10.49316 -9.91782 -9.89072 -9.56378 -9.36575 -9.14710 -8.92943 -8.39723 -6.04325 -4.07582 1.72124 2.43720 2.56313 3.15847 3.29368 3.36019 3.38755 3.58688 3.79559 4.35172 4.38215 4.42405 4.42909 4.53629 4.60517 4.69331 4.77948 4.88468 4.95101 5.00279 5.05572 5.14938 5.28161 5.28769 5.31686 5.39073 5.49586 5.57316 5.59724 5.65694 5.69858 5.70626 5.77309 5.84809 5.92521 6.04606 6.09052 6.17773 6.33869 6.53514 6.73938 6.94358 7.10911 7.49778 7.60107 7.71968 7.93947 8.03353 8.14340 8.35056 8.99005 9.56906 11.06901 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.029211 B = 0.001716 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.306993 B =16311.858928 C =16815.949251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.122 4.122 4 C 0.087 3.913 5 O -0.368 6.368 6 C 0.654 3.346 7 O -0.569 6.569 8 N -0.689 5.689 9 C 0.176 3.824 10 H 0.122 0.878 11 C 0.512 3.488 12 O -0.537 6.537 13 N -0.716 5.716 14 C 0.116 3.884 15 C -0.121 4.121 16 C 0.024 3.976 17 C -0.524 4.524 18 H 0.056 0.944 19 C 0.057 3.943 20 N -0.893 5.893 21 Si 0.893 3.107 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.175 4.175 26 C -0.171 4.171 27 C -0.177 4.177 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.418 0.582 38 H 0.402 0.598 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.261 0.739 46 H 0.121 0.879 47 H 0.094 0.906 48 H 0.096 0.904 49 H 0.094 0.906 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.884 -22.437 -9.747 31.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.159 4.159 4 C 0.012 3.988 5 O -0.282 6.282 6 C 0.407 3.593 7 O -0.458 6.458 8 N -0.349 5.349 9 C 0.068 3.932 10 H 0.139 0.861 11 C 0.296 3.704 12 O -0.414 6.414 13 N -0.367 5.367 14 C -0.006 4.006 15 C -0.160 4.160 16 C -0.014 4.014 17 C -0.562 4.562 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.532 5.532 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.195 4.195 26 C -0.208 4.208 27 C -0.213 4.213 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.256 0.744 38 H 0.236 0.764 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.037 0.963 44 H 0.038 0.962 45 H 0.071 0.929 46 H 0.139 0.861 47 H 0.112 0.888 48 H 0.114 0.886 49 H 0.113 0.887 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -20.223 -22.239 -9.352 31.480 hybrid contribution 1.258 0.330 -0.094 1.304 sum -18.965 -21.908 -9.445 30.477 Atomic orbital electron populations 1.21749 0.95051 1.01948 1.02166 1.21424 0.96476 0.95354 1.02640 1.21648 0.92286 0.98028 1.03985 1.23053 0.94392 0.78431 1.02912 1.86238 1.21801 1.33321 1.86860 1.17926 0.81236 0.84100 0.76035 1.90945 1.59594 1.39670 1.55629 1.44290 1.07062 1.06210 1.77385 1.20244 0.79724 0.96952 0.96261 0.86056 1.20230 0.83648 0.87431 0.79140 1.90719 1.46502 1.55007 1.49171 1.46114 1.06811 1.21201 1.62544 1.21720 0.98216 0.82341 0.98321 1.21904 0.90818 1.01949 1.01281 1.19033 0.96610 0.89638 0.96111 1.21197 0.92009 1.02451 1.40526 0.92616 1.25022 0.98042 0.96050 0.95284 1.69962 1.34792 1.07507 1.40965 0.86583 0.85612 0.78119 0.77610 1.20653 1.21195 1.19877 1.22656 1.01603 1.04346 0.90867 1.22965 0.97305 1.01983 0.98552 1.23395 1.03300 0.92135 1.02512 0.92471 0.92508 0.92409 0.91538 0.91512 0.90612 0.90658 0.91048 0.91033 0.74417 0.76397 0.91471 0.91507 0.92585 0.92601 0.96253 0.96242 0.92913 0.86117 0.88786 0.88565 0.88728 0.86398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.91 37.16 0.37 -0.26 16 2 C -0.12 -0.56 5.93 -26.73 -0.16 -0.72 16 3 C -0.12 -0.71 5.59 -26.73 -0.15 -0.86 16 4 C 0.09 0.69 5.47 37.16 0.20 0.89 16 5 O -0.37 -3.83 10.27 -40.33 -0.41 -4.24 16 6 C 0.65 7.66 7.58 54.05 0.41 8.07 16 7 O -0.57 -7.58 13.16 -19.28 -0.25 -7.84 16 8 N -0.69 -7.70 3.49 -59.86 -0.21 -7.91 16 9 C 0.18 1.95 2.84 -69.08 -0.20 1.75 16 10 H 0.12 1.33 7.58 -51.93 -0.39 0.93 16 11 C 0.51 6.94 7.22 -10.98 -0.08 6.86 16 12 O -0.54 -9.12 15.84 5.56 0.09 -9.03 16 13 N -0.72 -9.37 5.33 -60.30 -0.32 -9.69 16 14 C 0.12 1.92 5.67 -4.05 -0.02 1.90 16 15 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 16 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 17 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 18 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 21 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 C -0.18 -1.70 5.60 -90.62 -0.51 -2.20 16 26 C -0.17 -1.61 9.74 -26.69 -0.26 -1.87 16 27 C -0.18 -1.69 9.83 -26.69 -0.26 -1.95 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.42 4.65 7.90 -40.82 -0.32 4.33 16 38 H 0.40 4.18 8.09 -40.82 -0.33 3.85 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 46 H 0.12 1.06 7.63 -51.93 -0.40 0.67 16 47 H 0.09 0.93 6.67 -51.93 -0.35 0.58 16 48 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 49 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 50 H 0.12 1.34 5.01 -51.93 -0.26 1.08 16 LS Contribution 409.78 15.07 6.18 6.18 Total: -1.00 -32.25 409.78 -9.34 -41.60 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -8.78 Total: 4.00 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -1.35 Total: -3.54 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: 0.21 Total: -43.37 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.58 Total: -21.11 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.25 -9.34 -41.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186302195.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.761 kcal (2) G-P(sol) polarization free energy of solvation -32.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds