Wall clock time and date at job start Tue Mar 31 2020 15:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.46972 * 2 1 4 4 C 1.53007 * 109.47144 * 179.97438 * 3 2 1 5 5 O 1.45203 * 109.47046 * 180.02562 * 4 3 2 6 6 C 1.34641 * 116.99751 * 180.02562 * 5 4 3 7 7 O 1.21513 * 119.99735 * 359.97438 * 6 5 4 8 8 N 1.34768 * 119.99891 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00056 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.47049 * 324.99889 * 9 8 6 11 11 C 1.50706 * 109.47187 * 205.00100 * 9 8 6 12 12 O 1.21282 * 119.99865 * 359.97438 * 11 9 8 13 13 N 1.34774 * 120.00164 * 179.97438 * 11 9 8 14 14 C 1.46496 * 120.00140 * 179.97438 * 13 11 9 15 15 C 1.52997 * 109.47079 * 180.02562 * 14 13 11 16 16 C 1.53006 * 109.47164 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.47180 * 179.97438 * 16 15 14 18 18 H 1.07995 * 119.99918 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99755 * 179.97438 * 17 16 15 20 20 N 1.31508 * 119.99915 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99825 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47419 * 89.99702 * 21 19 17 23 23 H 1.48499 * 109.47011 * 210.00264 * 21 19 17 24 24 H 1.48506 * 109.46838 * 329.99551 * 21 19 17 25 25 C 1.52997 * 109.47473 * 84.99704 * 9 8 6 26 26 C 1.52998 * 117.49757 * 8.75024 * 25 9 8 27 27 C 1.53003 * 117.49978 * 300.08838 * 25 9 8 28 28 H 1.08999 * 109.47142 * 299.99700 * 1 2 3 29 29 H 1.09001 * 109.46781 * 60.00485 * 1 2 3 30 30 H 1.09002 * 109.46802 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47482 * 239.99889 * 2 1 3 32 32 H 1.08999 * 109.47149 * 120.00191 * 2 1 3 33 33 H 1.09006 * 109.47330 * 60.00239 * 3 2 1 34 34 H 1.09001 * 109.47476 * 299.99552 * 3 2 1 35 35 H 1.08999 * 109.46699 * 60.00466 * 4 3 2 36 36 H 1.08999 * 109.47420 * 300.00462 * 4 3 2 37 37 H 0.97001 * 120.00396 * 0.02562 * 8 6 5 38 38 H 0.97005 * 119.99795 * 0.02562 * 13 11 9 39 39 H 1.08992 * 109.47635 * 300.00509 * 14 13 11 40 40 H 1.09000 * 109.46684 * 60.00301 * 14 13 11 41 41 H 1.08998 * 109.47624 * 300.00083 * 15 14 13 42 42 H 1.08996 * 109.47497 * 60.00236 * 15 14 13 43 43 H 1.09001 * 109.47002 * 300.00262 * 16 15 14 44 44 H 1.09000 * 109.47050 * 59.99996 * 16 15 14 45 45 H 0.97001 * 119.99839 * 180.02562 * 20 19 17 46 46 H 1.09001 * 115.55272 * 154.41725 * 25 9 8 47 47 H 1.09004 * 117.50171 * 359.97438 * 26 25 9 48 48 H 1.09001 * 117.50114 * 145.02267 * 26 25 9 49 49 H 1.08997 * 117.49922 * 214.97679 * 27 25 9 50 50 H 1.08996 * 117.49497 * 359.97438 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0540 2.8115 0.0013 6 6 5.3888 2.9879 0.0013 7 8 6.1289 2.0242 0.0014 8 7 5.9038 4.2333 0.0024 9 6 7.3562 4.4253 0.0019 10 1 7.8270 3.6377 0.5903 11 6 7.6858 5.7671 0.6037 12 8 6.7951 6.4919 0.9941 13 7 8.9702 6.1617 0.7081 14 6 9.2905 7.4663 1.2925 15 6 10.8073 7.6667 1.2921 16 6 11.1419 9.0290 1.9031 17 6 12.6360 9.2262 1.9033 18 1 13.2822 8.4570 1.5069 19 6 13.1778 10.3890 2.4086 20 7 12.3908 11.3258 2.8909 21 14 15.0297 10.6337 2.4082 22 1 15.4426 11.2860 1.1397 23 1 15.4156 11.4938 3.5556 24 1 15.7031 9.3157 2.5292 25 6 7.8777 4.3690 -1.4353 26 6 6.8427 4.3429 -2.5618 27 6 7.6384 3.0797 -2.2237 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9336 0.9286 -0.8892 36 1 3.9330 0.9288 0.8908 37 1 5.3130 5.0026 0.0035 38 1 9.6826 5.5822 0.3955 39 1 8.8202 8.2537 0.7037 40 1 8.9186 7.5069 2.3163 41 1 11.2781 6.8794 1.8809 42 1 11.1789 7.6263 0.2683 43 1 10.6711 9.8166 1.3148 44 1 10.7704 9.0691 2.9271 45 1 12.7720 12.1440 3.2461 46 1 8.8083 4.9059 -1.6192 47 1 5.7902 4.3655 -2.2790 48 1 7.0925 4.8624 -3.4869 49 1 8.4113 2.7687 -2.9264 50 1 7.1098 2.2715 -1.7182 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186302195.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:17 Heat of formation + Delta-G solvation = -139.088834 kcal Electronic energy + Delta-G solvation = -27247.642821 eV Core-core repulsion = 23274.186837 eV Total energy + Delta-G solvation = -3973.455984 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.10192 -40.86170 -38.87976 -37.42612 -37.04214 -35.92306 -35.29280 -34.98018 -33.13881 -30.75714 -29.80418 -28.04183 -25.10142 -24.64739 -23.36754 -22.89092 -22.36498 -22.20037 -22.03295 -20.95525 -20.08201 -18.61527 -18.32742 -18.04778 -17.71318 -17.11685 -16.95935 -16.51631 -16.46808 -15.89271 -15.74245 -15.56358 -15.16515 -14.78346 -14.55139 -14.34485 -14.22778 -14.06091 -13.75725 -13.50040 -13.11497 -13.06305 -12.89700 -12.74222 -12.54833 -12.46658 -12.37585 -12.23910 -12.00329 -11.83496 -11.79054 -11.70637 -11.66046 -11.45456 -11.41724 -11.28173 -11.19756 -10.75214 -10.54012 -10.38146 -10.16329 -8.18483 -6.29563 0.87854 1.38532 1.42918 1.43768 1.54667 1.59944 2.07559 2.43225 2.81146 3.00830 3.15725 3.44080 3.67885 3.88790 3.89302 3.91353 4.09678 4.13141 4.17719 4.22360 4.24476 4.30797 4.32761 4.39514 4.56817 4.57162 4.77095 4.84365 4.85539 4.89463 4.94392 4.96069 4.97004 5.09235 5.12420 5.19044 5.20285 5.28872 5.30557 5.36002 5.40199 5.46224 5.53850 5.72876 5.85968 6.20143 6.23457 6.41712 6.88195 7.06145 7.14361 7.40158 8.93434 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.029211 B = 0.001716 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.306993 B =16311.858928 C =16815.949251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.115 4.115 4 C 0.082 3.918 5 O -0.373 6.373 6 C 0.655 3.345 7 O -0.586 6.586 8 N -0.688 5.688 9 C 0.185 3.815 10 H 0.127 0.873 11 C 0.515 3.485 12 O -0.572 6.572 13 N -0.703 5.703 14 C 0.130 3.870 15 C -0.103 4.103 16 C 0.023 3.977 17 C -0.541 4.541 18 H 0.067 0.933 19 C -0.002 4.002 20 N -0.934 5.934 21 Si 0.965 3.035 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.261 1.261 25 C -0.177 4.177 26 C -0.171 4.171 27 C -0.171 4.171 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.418 0.582 38 H 0.418 0.582 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.068 0.932 42 H 0.071 0.929 43 H -0.007 1.007 44 H -0.008 1.008 45 H 0.262 0.738 46 H 0.135 0.865 47 H 0.087 0.913 48 H 0.108 0.892 49 H 0.110 0.890 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.047 -24.047 -10.947 32.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.153 4.153 4 C 0.008 3.992 5 O -0.286 6.286 6 C 0.408 3.592 7 O -0.477 6.477 8 N -0.348 5.348 9 C 0.077 3.923 10 H 0.144 0.856 11 C 0.301 3.699 12 O -0.452 6.452 13 N -0.355 5.355 14 C 0.007 3.993 15 C -0.141 4.141 16 C -0.015 4.015 17 C -0.579 4.579 18 H 0.085 0.915 19 C -0.200 4.200 20 N -0.575 5.575 21 Si 0.789 3.211 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.185 1.185 25 C -0.196 4.196 26 C -0.209 4.209 27 C -0.208 4.208 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.256 0.744 38 H 0.256 0.744 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.012 0.988 44 H 0.010 0.990 45 H 0.071 0.929 46 H 0.153 0.847 47 H 0.105 0.895 48 H 0.127 0.873 49 H 0.129 0.871 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -19.380 -23.890 -10.573 32.528 hybrid contribution 0.922 0.812 0.291 1.262 sum -18.458 -23.078 -10.282 31.289 Atomic orbital electron populations 1.21753 0.94594 1.02383 1.02194 1.21423 0.96803 0.94420 1.03010 1.21639 0.90686 0.98966 1.03975 1.23289 0.95619 0.77350 1.02973 1.86255 1.21009 1.34799 1.86584 1.17967 0.81559 0.83898 0.75760 1.90932 1.60084 1.40158 1.56506 1.44300 1.07165 1.06145 1.77214 1.20175 0.79831 0.95047 0.97206 0.85569 1.20612 0.83069 0.87935 0.78304 1.90710 1.47535 1.56297 1.50651 1.45836 1.07442 1.20131 1.62093 1.21293 0.96591 0.83799 0.97638 1.21611 0.92260 0.98552 1.01688 1.18952 0.95451 0.92489 0.94619 1.21695 0.93416 1.02734 1.40049 0.91523 1.25987 1.03225 0.95846 0.94896 1.70105 1.37094 1.08141 1.42127 0.85449 0.79429 0.78488 0.77686 1.19848 1.21163 1.18471 1.22687 1.02212 1.04908 0.89822 1.23022 0.96915 1.02041 0.98884 1.23339 1.03490 0.91509 1.02442 0.92577 0.92380 0.91785 0.91037 0.91318 0.90830 0.90447 0.90732 0.91247 0.74424 0.74423 0.92601 0.92955 0.91349 0.91063 0.98812 0.98957 0.92879 0.84701 0.89498 0.87336 0.87143 0.88066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 71.98 0.71 -0.38 16 2 C -0.12 -0.97 5.93 30.59 0.18 -0.78 16 3 C -0.12 -1.25 5.59 30.59 0.17 -1.08 16 4 C 0.08 1.25 5.47 71.98 0.39 1.64 16 5 O -0.37 -7.61 10.27 -55.50 -0.57 -8.18 16 6 C 0.65 15.01 7.58 129.79 0.98 15.99 16 7 O -0.59 -15.25 13.16 19.80 0.26 -14.99 16 8 N -0.69 -14.98 3.49 -573.73 -2.00 -16.99 16 9 C 0.19 3.86 2.84 44.25 0.13 3.98 16 10 H 0.13 2.57 7.58 -2.39 -0.02 2.55 16 11 C 0.52 13.49 7.22 87.66 0.63 14.12 16 12 O -0.57 -19.39 15.84 -3.04 -0.05 -19.43 16 13 N -0.70 -17.34 5.33 -463.08 -2.47 -19.81 16 14 C 0.13 4.26 5.67 86.38 0.49 4.75 16 15 C -0.10 -3.75 5.27 30.60 0.16 -3.59 16 16 C 0.02 1.14 4.97 29.85 0.15 1.29 16 17 C -0.54 -29.61 9.11 25.60 0.23 -29.37 16 18 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 19 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 20 N -0.93 -56.41 13.29 21.45 0.28 -56.13 16 21 Si 0.96 43.27 29.54 68.60 2.03 45.30 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 24 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 25 C -0.18 -3.07 5.60 -10.79 -0.06 -3.13 16 26 C -0.17 -2.93 9.74 30.62 0.30 -2.63 16 27 C -0.17 -2.94 9.83 30.62 0.30 -2.64 16 28 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.42 9.22 7.90 -92.71 -0.73 8.49 16 38 H 0.42 7.62 8.09 -92.70 -0.75 6.87 16 39 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 43 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 44 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 45 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 46 H 0.14 1.98 7.63 -2.39 -0.02 1.96 16 47 H 0.09 1.62 6.67 -2.38 -0.02 1.60 16 48 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 50 H 0.10 2.17 5.01 -2.39 -0.01 2.16 16 Total: -1.00 -69.48 409.78 2.17 -67.31 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: -0.55 Total: 24.39 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: 5.24 Total: -1.48 kcal Atomic # 7 Polarization: -88.73 SS G_CDS: -4.19 Total: -92.92 kcal Atomic # 8 Polarization: -42.25 SS G_CDS: -0.36 Total: -42.60 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -69.48 2.17 -67.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186302195.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.774 kcal (2) G-P(sol) polarization free energy of solvation -69.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds