Wall clock time and date at job start Tue Mar 31 2020 15:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47043 * 2 1 4 4 C 1.53001 * 109.47043 * 179.97438 * 3 2 1 5 5 O 1.45196 * 109.46898 * 179.97438 * 4 3 2 6 6 C 1.34639 * 117.00289 * 179.97438 * 5 4 3 7 7 O 1.21514 * 119.99524 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00361 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00050 * 180.02562 * 8 6 5 10 10 H 1.09004 * 109.47042 * 34.99926 * 9 8 6 11 11 C 1.50696 * 109.47324 * 154.99905 * 9 8 6 12 12 O 1.21284 * 120.00109 * 359.97438 * 11 9 8 13 13 N 1.34777 * 120.00137 * 179.97438 * 11 9 8 14 14 C 1.46506 * 119.99873 * 179.97438 * 13 11 9 15 15 H 1.09000 * 109.47131 * 35.00870 * 14 13 11 16 16 C 1.50703 * 109.46762 * 155.00210 * 14 13 11 17 17 H 1.08004 * 120.00026 * 0.02562 * 16 14 13 18 18 C 1.37878 * 119.99838 * 180.02562 * 16 14 13 19 19 N 1.31516 * 119.99766 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99954 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47247 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47322 * 119.99797 * 20 18 16 23 23 H 1.48506 * 109.47093 * 239.99745 * 20 18 16 24 24 C 1.52998 * 109.47262 * 275.00296 * 14 13 11 25 25 C 1.52999 * 109.47021 * 65.00206 * 24 14 13 26 26 C 1.53002 * 109.47317 * 274.99997 * 9 8 6 27 27 C 1.53002 * 117.50090 * 128.74367 * 26 9 8 28 28 C 1.53003 * 117.49922 * 60.08474 * 26 9 8 29 29 H 1.08999 * 109.47160 * 60.00670 * 1 2 3 30 30 H 1.09003 * 109.46885 * 180.02562 * 1 2 3 31 31 H 1.08990 * 109.47330 * 300.00089 * 1 2 3 32 32 H 1.08994 * 109.47682 * 239.99241 * 2 1 3 33 33 H 1.09006 * 109.46908 * 119.99651 * 2 1 3 34 34 H 1.08994 * 109.47502 * 59.99130 * 3 2 1 35 35 H 1.08999 * 109.46596 * 299.99675 * 3 2 1 36 36 H 1.09000 * 109.47179 * 59.99965 * 4 3 2 37 37 H 1.08999 * 109.47160 * 299.99330 * 4 3 2 38 38 H 0.96994 * 120.00306 * 0.02562 * 8 6 5 39 39 H 0.96995 * 120.00018 * 0.27749 * 13 11 9 40 40 H 0.97005 * 119.99620 * 180.02562 * 19 18 16 41 41 H 1.08994 * 109.46883 * 185.00369 * 24 14 13 42 42 H 1.09004 * 109.46862 * 304.99987 * 24 14 13 43 43 H 1.08997 * 109.47126 * 60.00157 * 25 24 14 44 44 H 1.09007 * 109.46942 * 179.97438 * 25 24 14 45 45 H 1.09004 * 109.46916 * 299.99584 * 25 24 14 46 46 H 1.09002 * 115.54829 * 274.42142 * 26 9 8 47 47 H 1.09000 * 117.49453 * 0.02562 * 27 26 9 48 48 H 1.09002 * 117.49659 * 145.02001 * 27 26 9 49 49 H 1.08997 * 117.49859 * 214.98634 * 28 26 9 50 50 H 1.09004 * 117.49855 * 0.02562 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0539 2.8114 0.0000 6 6 5.3887 2.9880 0.0010 7 8 6.1289 2.0243 0.0028 8 7 5.9038 4.2334 0.0011 9 6 7.3562 4.4254 0.0016 10 1 7.8269 3.6383 -0.5876 11 6 7.6857 5.7677 -0.5989 12 8 6.7950 6.4924 -0.9894 13 7 8.9701 6.1628 -0.7021 14 6 9.2904 7.4675 -1.2865 15 1 8.5166 8.1863 -1.0167 16 6 10.6209 7.9406 -0.7601 17 1 11.1729 7.3302 -0.0607 18 6 11.1335 9.1526 -1.1715 19 7 10.4615 9.8956 -2.0236 20 14 12.7830 9.7387 -0.5197 21 1 13.3326 8.7268 0.4180 22 1 13.7244 9.9272 -1.6526 23 1 12.6032 11.0284 0.1944 24 6 9.3602 7.3409 -2.8096 25 6 7.9768 6.9817 -3.3554 26 6 7.8778 4.3678 1.4388 27 6 9.0476 3.4252 1.7286 28 6 7.6421 3.0763 2.2246 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8898 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9564 0.8898 35 1 1.6766 1.9562 -0.8900 36 1 3.9337 0.9285 -0.8891 37 1 3.9330 0.9289 0.8909 38 1 5.3130 5.0026 0.0007 39 1 9.6826 5.5815 -0.3935 40 1 10.8224 10.7482 -2.3133 41 1 9.6851 8.2889 -3.2384 42 1 10.0708 6.5587 -3.0769 43 1 7.2664 7.7639 -3.0881 44 1 8.0265 6.8919 -4.4407 45 1 7.6520 6.0336 -2.9266 46 1 7.8394 5.3069 1.9908 47 1 9.4458 2.8464 0.8952 48 1 9.7787 3.7440 2.4715 49 1 7.4491 3.1658 3.2937 50 1 7.1158 2.2675 1.7176 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186307003.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:23 Heat of formation + Delta-G solvation = -114.459803 kcal Electronic energy + Delta-G solvation = -28564.391962 eV Core-core repulsion = 24592.003973 eV Total energy + Delta-G solvation = -3972.387989 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.73568 -39.39954 -37.58235 -36.47161 -35.27203 -35.18595 -33.97517 -32.44030 -31.05880 -29.90213 -28.18209 -26.59392 -24.07674 -23.07644 -22.29315 -21.67990 -21.50757 -21.13191 -20.14055 -19.48880 -18.90760 -17.14141 -16.99427 -16.89324 -15.89052 -15.59032 -15.52567 -15.19849 -14.93903 -14.65843 -14.31189 -14.06317 -13.76971 -13.61935 -13.28485 -12.76799 -12.71058 -12.42648 -12.22418 -12.17486 -11.78449 -11.61894 -11.48869 -11.43798 -11.42233 -11.29395 -11.10080 -11.00309 -10.87480 -10.66099 -10.52874 -10.43372 -10.30622 -10.26081 -10.20861 -9.67109 -9.31462 -9.08820 -8.95043 -8.53973 -7.91607 -6.15776 -4.25092 2.02881 2.78033 3.18639 3.21875 3.30173 3.32570 3.75802 3.86418 4.25237 4.34427 4.51690 4.58772 4.73450 4.78454 4.91656 4.98672 5.06422 5.09010 5.13506 5.15936 5.19228 5.40057 5.41798 5.48367 5.50916 5.63197 5.69400 5.75779 5.82533 5.89222 5.94896 6.13769 6.18826 6.35769 6.36653 6.41541 6.44697 6.61692 6.99885 7.14348 7.29615 7.35994 7.46274 7.57438 7.67735 7.84918 8.13445 8.33046 8.56542 8.71454 8.99622 9.42005 10.89552 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.022141 B = 0.002481 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.334797 B =11281.137067 C =12177.644584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.122 4.122 4 C 0.087 3.913 5 O -0.369 6.369 6 C 0.654 3.346 7 O -0.576 6.576 8 N -0.683 5.683 9 C 0.173 3.827 10 H 0.110 0.890 11 C 0.503 3.497 12 O -0.544 6.544 13 N -0.695 5.695 14 C 0.271 3.729 15 H 0.051 0.949 16 C -0.533 4.533 17 H 0.063 0.937 18 C 0.066 3.934 19 N -0.882 5.882 20 Si 0.901 3.099 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.129 4.129 25 C -0.137 4.137 26 C -0.171 4.171 27 C -0.163 4.163 28 C -0.180 4.180 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.416 0.584 39 H 0.392 0.608 40 H 0.264 0.736 41 H 0.100 0.900 42 H 0.032 0.968 43 H 0.050 0.950 44 H 0.023 0.977 45 H 0.036 0.964 46 H 0.112 0.888 47 H 0.098 0.902 48 H 0.098 0.902 49 H 0.088 0.912 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.541 -17.042 5.604 21.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.159 4.159 4 C 0.012 3.988 5 O -0.283 6.283 6 C 0.407 3.593 7 O -0.466 6.466 8 N -0.342 5.342 9 C 0.065 3.935 10 H 0.128 0.872 11 C 0.286 3.714 12 O -0.423 6.423 13 N -0.342 5.342 14 C 0.169 3.831 15 H 0.069 0.931 16 C -0.571 4.571 17 H 0.081 0.919 18 C -0.137 4.137 19 N -0.519 5.519 20 Si 0.729 3.271 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.167 4.167 25 C -0.195 4.195 26 C -0.190 4.190 27 C -0.201 4.201 28 C -0.217 4.217 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.254 0.746 39 H 0.225 0.775 40 H 0.074 0.926 41 H 0.118 0.882 42 H 0.051 0.949 43 H 0.069 0.931 44 H 0.042 0.958 45 H 0.055 0.945 46 H 0.130 0.870 47 H 0.116 0.884 48 H 0.116 0.884 49 H 0.106 0.894 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.852 -16.814 5.199 21.793 hybrid contribution 1.062 0.412 0.442 1.222 sum -11.790 -16.402 5.641 20.973 Atomic orbital electron populations 1.21748 0.95137 1.01855 1.02152 1.21425 0.96393 0.95486 1.02591 1.21639 0.92490 0.97876 1.03943 1.22994 0.94229 0.78783 1.02754 1.86233 1.22128 1.32951 1.87032 1.17931 0.81005 0.84294 0.76060 1.90913 1.59581 1.39835 1.56268 1.44292 1.07255 1.05900 1.76773 1.20394 0.79323 0.98131 0.95605 0.87179 1.20018 0.84572 0.86990 0.79788 1.90686 1.46714 1.54939 1.49918 1.46410 1.05482 1.21753 1.60568 1.18852 0.96496 0.78286 0.89448 0.93141 1.21253 1.04123 1.04526 1.27248 0.91904 1.24886 0.97723 0.96288 0.94803 1.69904 1.38034 1.12364 1.31601 0.86399 0.83281 0.78721 0.78737 1.19707 1.20886 1.20921 1.21951 0.93985 1.02526 0.98288 1.21839 0.99289 1.00735 0.97591 1.22536 1.04642 0.96220 0.95630 1.22980 0.91298 1.02098 1.03716 1.23290 0.99830 0.98907 0.99682 0.92489 0.92481 0.92527 0.91547 0.91578 0.90702 0.90645 0.91187 0.91191 0.74597 0.77530 0.92596 0.88157 0.94930 0.93102 0.95780 0.94455 0.86977 0.88375 0.88361 0.89352 0.86464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.91 37.16 0.37 -0.44 16 2 C -0.12 -0.73 5.93 -26.73 -0.16 -0.88 16 3 C -0.12 -0.91 5.59 -26.73 -0.15 -1.06 16 4 C 0.09 0.86 5.47 37.16 0.20 1.07 16 5 O -0.37 -4.76 10.27 -40.32 -0.41 -5.17 16 6 C 0.65 9.57 8.08 54.05 0.44 10.01 16 7 O -0.58 -9.21 13.15 -19.28 -0.25 -9.47 16 8 N -0.68 -10.04 4.94 -59.86 -0.30 -10.34 16 9 C 0.17 2.62 2.68 -69.08 -0.19 2.44 16 10 H 0.11 1.67 7.34 -51.93 -0.38 1.29 16 11 C 0.50 9.36 5.77 -10.99 -0.06 9.30 16 12 O -0.54 -11.68 12.98 5.55 0.07 -11.61 16 13 N -0.69 -13.62 4.92 -54.93 -0.27 -13.89 16 14 C 0.27 6.52 2.24 -69.08 -0.15 6.37 16 15 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 16 C -0.53 -13.59 8.73 -34.44 -0.30 -13.89 16 17 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 18 C 0.07 1.73 5.29 -17.82 -0.09 1.64 16 19 N -0.88 -24.13 11.29 55.43 0.63 -23.50 16 20 Si 0.90 20.22 29.54 -169.99 -5.02 15.19 16 21 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 C -0.13 -3.04 5.45 -26.73 -0.15 -3.19 16 25 C -0.14 -3.00 8.51 37.16 0.32 -2.68 16 26 C -0.17 -2.30 5.16 -90.62 -0.47 -2.77 16 27 C -0.16 -1.94 10.18 -26.69 -0.27 -2.21 16 28 C -0.18 -2.25 9.73 -26.69 -0.26 -2.51 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.42 6.11 7.90 -40.82 -0.32 5.79 16 39 H 0.39 6.80 8.45 -40.82 -0.34 6.46 16 40 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 41 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 42 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.04 0.79 5.65 -51.93 -0.29 0.50 16 46 H 0.11 1.58 8.11 -51.93 -0.42 1.16 16 47 H 0.10 1.13 8.05 -51.93 -0.42 0.71 16 48 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 49 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 50 H 0.12 1.65 5.02 -51.93 -0.26 1.39 16 LS Contribution 400.93 15.07 6.04 6.04 Total: -1.00 -29.10 400.93 -9.03 -38.13 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: -8.59 Total: 13.43 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -0.93 Total: 1.18 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: 0.06 Total: -47.73 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.60 Total: -26.25 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.10 -9.03 -38.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186307003.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.334 kcal (2) G-P(sol) polarization free energy of solvation -29.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds