Wall clock time and date at job start Tue Mar 31 2020 15:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47043 * 2 1 4 4 C 1.53001 * 109.47043 * 179.97438 * 3 2 1 5 5 O 1.45196 * 109.46898 * 179.97438 * 4 3 2 6 6 C 1.34639 * 117.00289 * 179.97438 * 5 4 3 7 7 O 1.21514 * 119.99524 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00361 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00050 * 180.02562 * 8 6 5 10 10 H 1.09004 * 109.47042 * 34.99926 * 9 8 6 11 11 C 1.50696 * 109.47324 * 154.99905 * 9 8 6 12 12 O 1.21284 * 120.00109 * 359.97438 * 11 9 8 13 13 N 1.34777 * 120.00137 * 179.97438 * 11 9 8 14 14 C 1.46506 * 119.99873 * 179.97438 * 13 11 9 15 15 H 1.09000 * 109.47131 * 35.00870 * 14 13 11 16 16 C 1.50703 * 109.46762 * 155.00210 * 14 13 11 17 17 H 1.08004 * 120.00026 * 0.02562 * 16 14 13 18 18 C 1.37878 * 119.99838 * 180.02562 * 16 14 13 19 19 N 1.31516 * 119.99766 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99954 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47247 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47322 * 119.99797 * 20 18 16 23 23 H 1.48506 * 109.47093 * 239.99745 * 20 18 16 24 24 C 1.52998 * 109.47262 * 275.00296 * 14 13 11 25 25 C 1.52999 * 109.47021 * 65.00206 * 24 14 13 26 26 C 1.53002 * 109.47317 * 274.99997 * 9 8 6 27 27 C 1.53002 * 117.50090 * 128.74367 * 26 9 8 28 28 C 1.53003 * 117.49922 * 60.08474 * 26 9 8 29 29 H 1.08999 * 109.47160 * 60.00670 * 1 2 3 30 30 H 1.09003 * 109.46885 * 180.02562 * 1 2 3 31 31 H 1.08990 * 109.47330 * 300.00089 * 1 2 3 32 32 H 1.08994 * 109.47682 * 239.99241 * 2 1 3 33 33 H 1.09006 * 109.46908 * 119.99651 * 2 1 3 34 34 H 1.08994 * 109.47502 * 59.99130 * 3 2 1 35 35 H 1.08999 * 109.46596 * 299.99675 * 3 2 1 36 36 H 1.09000 * 109.47179 * 59.99965 * 4 3 2 37 37 H 1.08999 * 109.47160 * 299.99330 * 4 3 2 38 38 H 0.96994 * 120.00306 * 0.02562 * 8 6 5 39 39 H 0.96995 * 120.00018 * 0.27749 * 13 11 9 40 40 H 0.97005 * 119.99620 * 180.02562 * 19 18 16 41 41 H 1.08994 * 109.46883 * 185.00369 * 24 14 13 42 42 H 1.09004 * 109.46862 * 304.99987 * 24 14 13 43 43 H 1.08997 * 109.47126 * 60.00157 * 25 24 14 44 44 H 1.09007 * 109.46942 * 179.97438 * 25 24 14 45 45 H 1.09004 * 109.46916 * 299.99584 * 25 24 14 46 46 H 1.09002 * 115.54829 * 274.42142 * 26 9 8 47 47 H 1.09000 * 117.49453 * 0.02562 * 27 26 9 48 48 H 1.09002 * 117.49659 * 145.02001 * 27 26 9 49 49 H 1.08997 * 117.49859 * 214.98634 * 28 26 9 50 50 H 1.09004 * 117.49855 * 0.02562 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0539 2.8114 0.0000 6 6 5.3887 2.9880 0.0010 7 8 6.1289 2.0243 0.0028 8 7 5.9038 4.2334 0.0011 9 6 7.3562 4.4254 0.0016 10 1 7.8269 3.6383 -0.5876 11 6 7.6857 5.7677 -0.5989 12 8 6.7950 6.4924 -0.9894 13 7 8.9701 6.1628 -0.7021 14 6 9.2904 7.4675 -1.2865 15 1 8.5166 8.1863 -1.0167 16 6 10.6209 7.9406 -0.7601 17 1 11.1729 7.3302 -0.0607 18 6 11.1335 9.1526 -1.1715 19 7 10.4615 9.8956 -2.0236 20 14 12.7830 9.7387 -0.5197 21 1 13.3326 8.7268 0.4180 22 1 13.7244 9.9272 -1.6526 23 1 12.6032 11.0284 0.1944 24 6 9.3602 7.3409 -2.8096 25 6 7.9768 6.9817 -3.3554 26 6 7.8778 4.3678 1.4388 27 6 9.0476 3.4252 1.7286 28 6 7.6421 3.0763 2.2246 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8898 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9564 0.8898 35 1 1.6766 1.9562 -0.8900 36 1 3.9337 0.9285 -0.8891 37 1 3.9330 0.9289 0.8909 38 1 5.3130 5.0026 0.0007 39 1 9.6826 5.5815 -0.3935 40 1 10.8224 10.7482 -2.3133 41 1 9.6851 8.2889 -3.2384 42 1 10.0708 6.5587 -3.0769 43 1 7.2664 7.7639 -3.0881 44 1 8.0265 6.8919 -4.4407 45 1 7.6520 6.0336 -2.9266 46 1 7.8394 5.3069 1.9908 47 1 9.4458 2.8464 0.8952 48 1 9.7787 3.7440 2.4715 49 1 7.4491 3.1658 3.2937 50 1 7.1158 2.2675 1.7176 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186307003.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:22 Heat of formation + Delta-G solvation = -132.054794 kcal Electronic energy + Delta-G solvation = -28565.154938 eV Core-core repulsion = 24592.003973 eV Total energy + Delta-G solvation = -3973.150965 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.92405 -40.80462 -38.76648 -37.45822 -37.01240 -35.89534 -35.19386 -34.29095 -32.86161 -30.64641 -29.61371 -28.26601 -25.08421 -24.66982 -23.26612 -22.79027 -22.56472 -22.06939 -21.51400 -21.13772 -20.20877 -18.71145 -18.18034 -17.92145 -17.30569 -17.19719 -16.61548 -16.45231 -16.30339 -16.05208 -15.43365 -15.10135 -15.03456 -14.58279 -14.42335 -14.29936 -14.13645 -13.67737 -13.49396 -13.17098 -13.09661 -13.00912 -12.88265 -12.86203 -12.69125 -12.37645 -12.19900 -12.15180 -12.06241 -11.98939 -11.76909 -11.66041 -11.58492 -11.47980 -11.38716 -11.28399 -11.03097 -10.71217 -10.52396 -10.25783 -9.66374 -8.14485 -6.30755 0.95466 1.45299 1.47514 1.58321 1.59472 1.71415 2.33990 2.53735 2.76850 3.15568 3.23570 3.59988 3.78729 3.90476 3.91929 3.95892 4.06144 4.17428 4.23405 4.34065 4.36772 4.49860 4.53607 4.57291 4.58534 4.75772 4.81540 4.85606 4.90314 4.92830 4.99181 5.05232 5.07997 5.17351 5.21755 5.26825 5.31592 5.34221 5.41656 5.43520 5.47765 5.55216 5.62468 5.79631 5.91445 6.17755 6.28722 6.76598 6.88596 7.20550 7.32834 7.48902 8.90904 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.022141 B = 0.002481 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.334797 B =11281.137067 C =12177.644584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.115 4.115 4 C 0.081 3.919 5 O -0.373 6.373 6 C 0.656 3.344 7 O -0.589 6.589 8 N -0.685 5.685 9 C 0.188 3.812 10 H 0.115 0.885 11 C 0.505 3.495 12 O -0.574 6.574 13 N -0.691 5.691 14 C 0.280 3.720 15 H 0.004 0.996 16 C -0.543 4.543 17 H 0.073 0.927 18 C 0.016 3.984 19 N -0.914 5.914 20 Si 0.967 3.033 21 H -0.260 1.260 22 H -0.281 1.281 23 H -0.286 1.286 24 C -0.123 4.123 25 C -0.123 4.123 26 C -0.183 4.183 27 C -0.150 4.150 28 C -0.172 4.172 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.416 0.584 39 H 0.405 0.595 40 H 0.264 0.736 41 H 0.073 0.927 42 H 0.041 0.959 43 H 0.028 0.972 44 H 0.043 0.957 45 H 0.041 0.959 46 H 0.105 0.895 47 H 0.104 0.896 48 H 0.114 0.886 49 H 0.102 0.898 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.979 -18.846 6.595 23.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.153 4.153 4 C 0.007 3.993 5 O -0.287 6.287 6 C 0.409 3.591 7 O -0.481 6.481 8 N -0.344 5.344 9 C 0.080 3.920 10 H 0.133 0.867 11 C 0.290 3.710 12 O -0.455 6.455 13 N -0.339 5.339 14 C 0.177 3.823 15 H 0.022 0.978 16 C -0.581 4.581 17 H 0.091 0.909 18 C -0.184 4.184 19 N -0.553 5.553 20 Si 0.793 3.207 21 H -0.184 1.184 22 H -0.207 1.207 23 H -0.212 1.212 24 C -0.162 4.162 25 C -0.181 4.181 26 C -0.203 4.203 27 C -0.188 4.188 28 C -0.209 4.209 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.253 0.747 39 H 0.240 0.760 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.060 0.940 43 H 0.048 0.952 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.124 0.876 47 H 0.122 0.878 48 H 0.132 0.868 49 H 0.121 0.879 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.299 -18.663 6.208 23.197 hybrid contribution 0.797 0.943 0.130 1.242 sum -11.501 -17.721 6.338 22.056 Atomic orbital electron populations 1.21751 0.94528 1.02415 1.02192 1.21425 0.96847 0.94317 1.03030 1.21641 0.90656 0.99050 1.03935 1.23287 0.95643 0.77424 1.02937 1.86254 1.20999 1.34788 1.86671 1.17931 0.81518 0.83876 0.75741 1.90900 1.60083 1.40147 1.56942 1.44300 1.07090 1.06120 1.76917 1.20190 0.79815 0.95400 0.96552 0.86734 1.20552 0.83655 0.87952 0.78863 1.90676 1.47484 1.56301 1.51018 1.46120 1.06517 1.20556 1.60693 1.18423 0.94655 0.79332 0.89931 0.97795 1.21588 1.04511 1.04817 1.27233 0.90855 1.25728 1.01117 0.96551 0.95026 1.70049 1.39692 1.12694 1.32818 0.85364 0.79076 0.78104 0.78184 1.18368 1.20710 1.21212 1.21811 0.95043 1.01345 0.97994 1.21679 0.97594 1.00002 0.98804 1.22426 1.06688 0.96663 0.94497 1.23113 0.91100 1.00582 1.03990 1.23246 1.00198 0.97324 1.00123 0.92584 0.91678 0.92395 0.91285 0.91010 0.90504 0.90869 0.91292 0.90738 0.74702 0.75956 0.92679 0.90860 0.94041 0.95231 0.93750 0.94013 0.87649 0.87803 0.86781 0.87922 0.87770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 71.98 0.71 -0.67 16 2 C -0.12 -1.24 5.93 30.59 0.18 -1.06 16 3 C -0.12 -1.60 5.59 30.59 0.17 -1.43 16 4 C 0.08 1.53 5.47 71.98 0.39 1.92 16 5 O -0.37 -9.36 10.27 -55.48 -0.57 -9.93 16 6 C 0.66 18.69 8.08 129.79 1.05 19.74 16 7 O -0.59 -18.22 13.15 19.80 0.26 -17.96 16 8 N -0.69 -19.86 4.94 -573.72 -2.83 -22.69 16 9 C 0.19 5.54 2.68 44.24 0.12 5.66 16 10 H 0.12 3.33 7.34 -2.38 -0.02 3.31 16 11 C 0.50 18.77 5.77 87.66 0.51 19.28 16 12 O -0.57 -25.17 12.98 -3.04 -0.04 -25.21 16 13 N -0.69 -26.91 4.92 -446.09 -2.20 -29.11 16 14 C 0.28 13.72 2.24 44.24 0.10 13.82 16 15 H 0.00 0.24 7.58 -2.39 -0.02 0.22 16 16 C -0.54 -27.64 8.73 25.60 0.22 -27.41 16 17 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 18 C 0.02 0.83 5.29 84.65 0.45 1.28 16 19 N -0.91 -51.05 11.29 21.45 0.24 -50.81 16 20 Si 0.97 41.18 29.54 68.60 2.03 43.21 16 21 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 22 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 24 C -0.12 -5.89 5.45 30.59 0.17 -5.72 16 25 C -0.12 -5.43 8.51 71.98 0.61 -4.81 16 26 C -0.18 -4.68 5.16 -10.79 -0.06 -4.74 16 27 C -0.15 -3.19 10.18 30.62 0.31 -2.87 16 28 C -0.17 -3.94 9.73 30.62 0.30 -3.64 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16 38 H 0.42 12.24 7.90 -92.71 -0.73 11.51 16 39 H 0.41 13.59 8.45 -92.71 -0.78 12.81 16 40 H 0.26 14.01 8.31 -92.70 -0.77 13.24 16 41 H 0.07 3.95 5.95 -2.39 -0.01 3.93 16 42 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 43 H 0.03 1.39 7.85 -2.39 -0.02 1.37 16 44 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 45 H 0.04 1.77 5.65 -2.39 -0.01 1.75 16 46 H 0.11 2.87 8.11 -2.39 -0.02 2.85 16 47 H 0.10 2.11 8.05 -2.39 -0.02 2.09 16 48 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 49 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 50 H 0.10 2.75 5.02 -2.38 -0.01 2.74 16 Total: -1.00 -62.66 400.93 1.56 -61.10 By element: Atomic # 1 Polarization: 42.63 SS G_CDS: -0.57 Total: 42.05 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 5.24 Total: 9.35 kcal Atomic # 7 Polarization: -97.83 SS G_CDS: -4.79 Total: -102.61 kcal Atomic # 8 Polarization: -52.75 SS G_CDS: -0.35 Total: -53.10 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -62.66 1.56 -61.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186307003.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.955 kcal (2) G-P(sol) polarization free energy of solvation -62.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds