Wall clock time and date at job start Tue Mar 31 2020 15:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47222 * 2 1 4 4 C 1.53002 * 109.46948 * 179.97438 * 3 2 1 5 5 O 1.45203 * 109.46750 * 179.97438 * 4 3 2 6 6 C 1.34636 * 116.99909 * 179.97438 * 5 4 3 7 7 O 1.21509 * 120.00106 * 0.02562 * 6 5 4 8 8 N 1.34781 * 120.00070 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99874 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47391 * 325.00213 * 9 8 6 11 11 C 1.50699 * 109.47060 * 205.00285 * 9 8 6 12 12 O 1.21277 * 119.99833 * 359.97438 * 11 9 8 13 13 N 1.34773 * 120.00068 * 180.02562 * 11 9 8 14 14 C 1.46500 * 119.99996 * 179.97438 * 13 11 9 15 15 H 1.09006 * 109.47281 * 35.00200 * 14 13 11 16 16 C 1.50706 * 109.47034 * 154.99837 * 14 13 11 17 17 H 1.07994 * 119.99897 * 0.02562 * 16 14 13 18 18 C 1.37880 * 119.99735 * 180.02562 * 16 14 13 19 19 N 1.31509 * 119.99988 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 119.99573 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47529 * 59.99777 * 20 18 16 22 22 H 1.48503 * 109.46885 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47111 * 299.99698 * 20 18 16 24 24 C 1.52998 * 109.47169 * 274.99870 * 14 13 11 25 25 C 1.53003 * 109.47197 * 65.00245 * 24 14 13 26 26 C 1.53000 * 109.46840 * 85.00543 * 9 8 6 27 27 C 1.52995 * 117.50099 * 8.74246 * 26 9 8 28 28 C 1.53004 * 117.50029 * 300.08239 * 26 9 8 29 29 H 1.09005 * 109.47306 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47339 * 300.00184 * 1 2 3 31 31 H 1.09003 * 109.47006 * 60.00140 * 1 2 3 32 32 H 1.08994 * 109.47339 * 239.99816 * 2 1 3 33 33 H 1.09003 * 109.47006 * 119.99860 * 2 1 3 34 34 H 1.09001 * 109.46798 * 59.99471 * 3 2 1 35 35 H 1.09003 * 109.47016 * 299.99854 * 3 2 1 36 36 H 1.08994 * 109.47302 * 60.00006 * 4 3 2 37 37 H 1.08993 * 109.47253 * 299.99679 * 4 3 2 38 38 H 0.97002 * 119.99716 * 0.02562 * 8 6 5 39 39 H 0.96998 * 119.99906 * 359.97438 * 13 11 9 40 40 H 0.97005 * 119.99896 * 180.02562 * 19 18 16 41 41 H 1.09004 * 109.46745 * 184.99941 * 24 14 13 42 42 H 1.08998 * 109.46967 * 304.99726 * 24 14 13 43 43 H 1.08998 * 109.47241 * 59.99439 * 25 24 14 44 44 H 1.08993 * 109.46998 * 180.02562 * 25 24 14 45 45 H 1.08997 * 109.46511 * 299.99973 * 25 24 14 46 46 H 1.09003 * 115.54875 * 154.42021 * 26 9 8 47 47 H 1.08997 * 117.49775 * 0.02562 * 27 26 9 48 48 H 1.09000 * 117.49863 * 145.02467 * 27 26 9 49 49 H 1.08993 * 117.49963 * 214.98702 * 28 26 9 50 50 H 1.08999 * 117.49372 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0540 2.8114 0.0000 6 6 5.3888 2.9879 0.0010 7 8 6.1290 2.0242 0.0019 8 7 5.9039 4.2333 0.0000 9 6 7.3563 4.4252 0.0017 10 1 7.8261 3.6390 0.5928 11 6 7.6848 5.7684 0.6008 12 8 6.7935 6.4941 0.9878 13 7 8.9690 6.1636 0.7056 14 6 9.2884 7.4696 1.2875 15 1 8.5794 7.6957 2.0840 16 6 10.6854 7.4400 1.8520 17 1 11.2764 6.5387 1.7837 18 6 11.2089 8.5636 2.4557 19 7 10.4890 9.6610 2.5392 20 14 12.9408 8.5271 3.1547 21 1 13.9065 8.2201 2.0692 22 1 13.2640 9.8505 3.7458 23 1 13.0284 7.4815 4.2056 24 6 9.1988 8.5463 0.2042 25 6 7.7524 8.6623 -0.2813 26 6 7.8802 4.3656 -1.4346 27 6 6.8472 4.3369 -2.5628 28 6 7.6422 3.0744 -2.2204 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9337 0.9285 -0.8890 37 1 3.9330 0.9288 0.8908 38 1 5.3130 5.0026 -0.0011 39 1 9.6819 5.5834 0.3957 40 1 10.8575 10.4517 2.9636 41 1 9.5219 9.5028 0.6151 42 1 9.8422 8.2743 -0.6325 43 1 7.1090 8.9342 0.5555 44 1 7.6887 9.4290 -1.0533 45 1 7.4294 7.7058 -0.6920 46 1 8.8112 4.9020 -1.6181 47 1 5.7943 4.3609 -2.2818 48 1 7.0986 4.8541 -3.4887 49 1 8.4164 2.7617 -2.9210 50 1 7.1128 2.2674 -1.7139 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186307004.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:28 Heat of formation + Delta-G solvation = -109.839095 kcal Electronic energy + Delta-G solvation = -28680.065475 eV Core-core repulsion = 24707.877855 eV Total energy + Delta-G solvation = -3972.187620 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.87002 -39.41607 -37.69315 -36.40781 -35.23255 -35.20120 -33.80428 -32.47852 -31.10405 -29.91062 -28.32442 -26.60350 -24.11301 -23.06143 -22.36036 -21.79196 -21.51887 -21.14332 -19.94627 -19.41034 -18.92563 -17.35492 -16.99020 -16.81639 -16.07740 -15.67530 -15.54305 -15.07491 -14.87943 -14.63074 -14.34966 -14.00039 -13.85892 -13.62095 -13.32767 -12.81920 -12.71099 -12.43959 -12.25620 -12.13826 -11.84439 -11.61015 -11.54132 -11.44610 -11.40818 -11.28380 -11.11269 -11.03640 -10.85087 -10.68720 -10.57633 -10.47232 -10.34092 -10.22249 -10.14734 -9.66914 -9.30611 -9.10291 -8.95161 -8.53448 -7.92901 -6.15499 -4.25190 2.01155 2.74945 3.18010 3.24347 3.29773 3.30908 3.73642 3.99332 4.08332 4.33743 4.50934 4.57009 4.71658 4.76850 4.90806 4.96875 5.02037 5.08960 5.13376 5.16114 5.32027 5.39951 5.41038 5.45708 5.49698 5.57285 5.69011 5.73113 5.81827 5.88125 5.90690 6.10810 6.19676 6.31837 6.35451 6.41494 6.43333 6.61486 6.99688 7.13943 7.28939 7.35175 7.42489 7.56731 7.67072 7.84733 8.13321 8.29677 8.55204 8.70816 8.98534 9.41848 10.89677 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.020700 B = 0.002420 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.307687 B =11569.293665 C =11734.731064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.122 4.122 4 C 0.087 3.913 5 O -0.370 6.370 6 C 0.652 3.348 7 O -0.572 6.572 8 N -0.685 5.685 9 C 0.172 3.828 10 H 0.116 0.884 11 C 0.505 3.495 12 O -0.542 6.542 13 N -0.698 5.698 14 C 0.271 3.729 15 H 0.050 0.950 16 C -0.536 4.536 17 H 0.061 0.939 18 C 0.067 3.933 19 N -0.882 5.882 20 Si 0.902 3.098 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 C -0.127 4.127 25 C -0.137 4.137 26 C -0.168 4.168 27 C -0.172 4.172 28 C -0.180 4.180 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.417 0.583 39 H 0.391 0.609 40 H 0.265 0.735 41 H 0.100 0.900 42 H 0.032 0.968 43 H 0.049 0.951 44 H 0.022 0.978 45 H 0.039 0.961 46 H 0.120 0.880 47 H 0.092 0.908 48 H 0.093 0.907 49 H 0.091 0.909 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.376 -15.462 -8.603 22.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.159 4.159 4 C 0.012 3.988 5 O -0.284 6.284 6 C 0.405 3.595 7 O -0.462 6.462 8 N -0.345 5.345 9 C 0.064 3.936 10 H 0.134 0.866 11 C 0.288 3.712 12 O -0.421 6.421 13 N -0.346 5.346 14 C 0.170 3.830 15 H 0.068 0.932 16 C -0.575 4.575 17 H 0.080 0.920 18 C -0.136 4.136 19 N -0.519 5.519 20 Si 0.729 3.271 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.202 1.202 24 C -0.166 4.166 25 C -0.195 4.195 26 C -0.188 4.188 27 C -0.209 4.209 28 C -0.217 4.217 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.255 0.745 39 H 0.224 0.776 40 H 0.075 0.925 41 H 0.118 0.882 42 H 0.050 0.950 43 H 0.068 0.932 44 H 0.042 0.958 45 H 0.058 0.942 46 H 0.138 0.862 47 H 0.111 0.889 48 H 0.112 0.888 49 H 0.110 0.890 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.688 -15.222 -8.217 22.059 hybrid contribution 1.163 0.089 0.208 1.184 sum -12.526 -15.132 -8.009 21.214 Atomic orbital electron populations 1.21749 0.95127 1.01865 1.02150 1.21425 0.96400 0.95468 1.02605 1.21641 0.92451 0.97900 1.03942 1.23004 0.94254 0.78717 1.02800 1.86234 1.22079 1.33033 1.87018 1.17962 0.81069 0.84300 0.76152 1.90926 1.59550 1.39769 1.55919 1.44339 1.07381 1.05922 1.76855 1.20348 0.79115 0.98137 0.95968 0.86624 1.20008 0.84533 0.86798 0.79865 1.90682 1.46580 1.54828 1.50024 1.46438 1.05453 1.21763 1.60915 1.18838 0.96178 0.76469 0.91508 0.93181 1.21185 0.99020 0.98480 1.38774 0.92034 1.24878 0.98020 0.95186 0.95541 1.69879 1.36834 1.02227 1.42934 0.86507 0.83952 0.77315 0.79326 1.20142 1.21148 1.20167 1.21934 0.93455 1.03555 0.97661 1.21841 0.99048 0.99059 0.99539 1.22654 1.01448 1.03537 0.91127 1.22923 0.97360 1.01941 0.98663 1.23380 1.03291 0.92267 1.02777 0.92471 0.92485 0.92530 0.91572 0.91534 0.90638 0.90703 0.91177 0.91130 0.74501 0.77621 0.92470 0.88234 0.94961 0.93172 0.95841 0.94203 0.86175 0.88924 0.88842 0.89036 0.86511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.91 37.16 0.37 -0.44 16 2 C -0.12 -0.72 5.93 -26.73 -0.16 -0.88 16 3 C -0.12 -0.90 5.59 -26.73 -0.15 -1.05 16 4 C 0.09 0.85 5.47 37.16 0.20 1.06 16 5 O -0.37 -4.69 10.27 -40.31 -0.41 -5.10 16 6 C 0.65 9.41 7.59 54.06 0.41 9.82 16 7 O -0.57 -9.13 13.16 -19.28 -0.25 -9.39 16 8 N -0.68 -9.87 3.49 -59.87 -0.21 -10.08 16 9 C 0.17 2.58 2.84 -69.08 -0.20 2.38 16 10 H 0.12 1.75 7.58 -51.93 -0.39 1.36 16 11 C 0.50 9.32 5.79 -10.99 -0.06 9.25 16 12 O -0.54 -11.60 12.97 5.56 0.07 -11.52 16 13 N -0.70 -13.57 4.80 -54.93 -0.26 -13.84 16 14 C 0.27 6.53 2.24 -69.08 -0.15 6.38 16 15 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 16 C -0.54 -13.72 8.73 -34.44 -0.30 -14.02 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 19 N -0.88 -24.15 11.30 55.43 0.63 -23.52 16 20 Si 0.90 20.29 29.54 -169.99 -5.02 15.26 16 21 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 C -0.13 -2.97 5.45 -26.73 -0.15 -3.11 16 25 C -0.14 -2.93 8.52 37.16 0.32 -2.61 16 26 C -0.17 -2.22 5.60 -90.62 -0.51 -2.73 16 27 C -0.17 -2.11 9.74 -26.70 -0.26 -2.37 16 28 C -0.18 -2.23 9.82 -26.69 -0.26 -2.49 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.42 6.02 7.90 -40.82 -0.32 5.70 16 39 H 0.39 6.65 8.16 -40.82 -0.33 6.32 16 40 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 41 H 0.10 2.60 5.96 -51.93 -0.31 2.29 16 42 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.04 0.81 5.64 -51.93 -0.29 0.52 16 46 H 0.12 1.55 7.63 -51.93 -0.40 1.15 16 47 H 0.09 1.17 6.67 -51.93 -0.35 0.82 16 48 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 49 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 50 H 0.12 1.63 5.01 -51.93 -0.26 1.37 16 LS Contribution 397.21 15.07 5.99 5.99 Total: -1.00 -29.15 397.21 -8.96 -38.11 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: -8.49 Total: 13.24 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -0.99 Total: 0.86 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: 0.15 Total: -47.44 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.60 Total: -26.01 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -29.15 -8.96 -38.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186307004.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.731 kcal (2) G-P(sol) polarization free energy of solvation -29.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds