Wall clock time and date at job start Tue Mar 31 2020 15:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47222 * 2 1 4 4 C 1.53002 * 109.46948 * 179.97438 * 3 2 1 5 5 O 1.45203 * 109.46750 * 179.97438 * 4 3 2 6 6 C 1.34636 * 116.99909 * 179.97438 * 5 4 3 7 7 O 1.21509 * 120.00106 * 0.02562 * 6 5 4 8 8 N 1.34781 * 120.00070 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99874 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47391 * 325.00213 * 9 8 6 11 11 C 1.50699 * 109.47060 * 205.00285 * 9 8 6 12 12 O 1.21277 * 119.99833 * 359.97438 * 11 9 8 13 13 N 1.34773 * 120.00068 * 180.02562 * 11 9 8 14 14 C 1.46500 * 119.99996 * 179.97438 * 13 11 9 15 15 H 1.09006 * 109.47281 * 35.00200 * 14 13 11 16 16 C 1.50706 * 109.47034 * 154.99837 * 14 13 11 17 17 H 1.07994 * 119.99897 * 0.02562 * 16 14 13 18 18 C 1.37880 * 119.99735 * 180.02562 * 16 14 13 19 19 N 1.31509 * 119.99988 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 119.99573 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47529 * 59.99777 * 20 18 16 22 22 H 1.48503 * 109.46885 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47111 * 299.99698 * 20 18 16 24 24 C 1.52998 * 109.47169 * 274.99870 * 14 13 11 25 25 C 1.53003 * 109.47197 * 65.00245 * 24 14 13 26 26 C 1.53000 * 109.46840 * 85.00543 * 9 8 6 27 27 C 1.52995 * 117.50099 * 8.74246 * 26 9 8 28 28 C 1.53004 * 117.50029 * 300.08239 * 26 9 8 29 29 H 1.09005 * 109.47306 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47339 * 300.00184 * 1 2 3 31 31 H 1.09003 * 109.47006 * 60.00140 * 1 2 3 32 32 H 1.08994 * 109.47339 * 239.99816 * 2 1 3 33 33 H 1.09003 * 109.47006 * 119.99860 * 2 1 3 34 34 H 1.09001 * 109.46798 * 59.99471 * 3 2 1 35 35 H 1.09003 * 109.47016 * 299.99854 * 3 2 1 36 36 H 1.08994 * 109.47302 * 60.00006 * 4 3 2 37 37 H 1.08993 * 109.47253 * 299.99679 * 4 3 2 38 38 H 0.97002 * 119.99716 * 0.02562 * 8 6 5 39 39 H 0.96998 * 119.99906 * 359.97438 * 13 11 9 40 40 H 0.97005 * 119.99896 * 180.02562 * 19 18 16 41 41 H 1.09004 * 109.46745 * 184.99941 * 24 14 13 42 42 H 1.08998 * 109.46967 * 304.99726 * 24 14 13 43 43 H 1.08998 * 109.47241 * 59.99439 * 25 24 14 44 44 H 1.08993 * 109.46998 * 180.02562 * 25 24 14 45 45 H 1.08997 * 109.46511 * 299.99973 * 25 24 14 46 46 H 1.09003 * 115.54875 * 154.42021 * 26 9 8 47 47 H 1.08997 * 117.49775 * 0.02562 * 27 26 9 48 48 H 1.09000 * 117.49863 * 145.02467 * 27 26 9 49 49 H 1.08993 * 117.49963 * 214.98702 * 28 26 9 50 50 H 1.08999 * 117.49372 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0540 2.8114 0.0000 6 6 5.3888 2.9879 0.0010 7 8 6.1290 2.0242 0.0019 8 7 5.9039 4.2333 0.0000 9 6 7.3563 4.4252 0.0017 10 1 7.8261 3.6390 0.5928 11 6 7.6848 5.7684 0.6008 12 8 6.7935 6.4941 0.9878 13 7 8.9690 6.1636 0.7056 14 6 9.2884 7.4696 1.2875 15 1 8.5794 7.6957 2.0840 16 6 10.6854 7.4400 1.8520 17 1 11.2764 6.5387 1.7837 18 6 11.2089 8.5636 2.4557 19 7 10.4890 9.6610 2.5392 20 14 12.9408 8.5271 3.1547 21 1 13.9065 8.2201 2.0692 22 1 13.2640 9.8505 3.7458 23 1 13.0284 7.4815 4.2056 24 6 9.1988 8.5463 0.2042 25 6 7.7524 8.6623 -0.2813 26 6 7.8802 4.3656 -1.4346 27 6 6.8472 4.3369 -2.5628 28 6 7.6422 3.0744 -2.2204 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9337 0.9285 -0.8890 37 1 3.9330 0.9288 0.8908 38 1 5.3130 5.0026 -0.0011 39 1 9.6819 5.5834 0.3957 40 1 10.8575 10.4517 2.9636 41 1 9.5219 9.5028 0.6151 42 1 9.8422 8.2743 -0.6325 43 1 7.1090 8.9342 0.5555 44 1 7.6887 9.4290 -1.0533 45 1 7.4294 7.7058 -0.6920 46 1 8.8112 4.9020 -1.6181 47 1 5.7943 4.3609 -2.2818 48 1 7.0986 4.8541 -3.4887 49 1 8.4164 2.7617 -2.9210 50 1 7.1128 2.2674 -1.7139 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186307004.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:27 Heat of formation + Delta-G solvation = -126.747452 kcal Electronic energy + Delta-G solvation = -28680.798676 eV Core-core repulsion = 24707.877855 eV Total energy + Delta-G solvation = -3972.920822 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.04597 -40.80439 -38.87445 -37.39961 -36.97686 -35.90762 -34.98674 -34.31898 -32.88368 -30.66963 -29.70403 -28.30379 -25.06893 -24.69614 -23.34711 -22.84996 -22.60551 -22.07921 -21.45620 -20.85830 -20.21522 -18.79553 -18.16770 -17.99659 -17.37735 -17.17513 -16.82077 -16.48562 -16.14105 -15.83863 -15.60271 -15.10865 -14.95182 -14.56275 -14.47755 -14.32661 -14.15386 -13.75846 -13.39041 -13.14641 -13.10116 -13.02896 -12.89398 -12.87135 -12.64464 -12.43371 -12.22619 -12.18183 -12.05284 -11.99469 -11.77235 -11.69252 -11.59903 -11.48667 -11.40418 -11.22298 -11.04403 -10.62730 -10.50097 -10.27113 -9.66871 -8.14798 -6.31528 0.94275 1.46472 1.47535 1.54991 1.58413 1.71698 2.32402 2.52437 2.88281 3.05720 3.14892 3.61841 3.79576 3.89826 3.91175 3.95335 4.13716 4.18550 4.27905 4.33450 4.36678 4.42327 4.53942 4.58129 4.61869 4.78235 4.79524 4.85143 4.88637 4.90285 4.96224 5.09110 5.11885 5.14614 5.21968 5.29795 5.31141 5.31346 5.41027 5.46435 5.47169 5.56587 5.61441 5.81438 5.91697 6.18782 6.25947 6.75430 6.88354 7.18358 7.32366 7.48629 8.89944 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.020700 B = 0.002420 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.307687 B =11569.293665 C =11734.731064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.115 4.115 4 C 0.081 3.919 5 O -0.372 6.372 6 C 0.654 3.346 7 O -0.588 6.588 8 N -0.685 5.685 9 C 0.186 3.814 10 H 0.116 0.884 11 C 0.507 3.493 12 O -0.573 6.573 13 N -0.694 5.694 14 C 0.280 3.720 15 H 0.001 0.999 16 C -0.549 4.549 17 H 0.072 0.928 18 C 0.017 3.983 19 N -0.913 5.913 20 Si 0.967 3.033 21 H -0.265 1.265 22 H -0.288 1.288 23 H -0.273 1.273 24 C -0.120 4.120 25 C -0.124 4.124 26 C -0.177 4.177 27 C -0.167 4.167 28 C -0.169 4.169 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.417 0.583 39 H 0.405 0.595 40 H 0.264 0.736 41 H 0.070 0.930 42 H 0.042 0.958 43 H 0.025 0.975 44 H 0.043 0.957 45 H 0.048 0.952 46 H 0.128 0.872 47 H 0.087 0.913 48 H 0.109 0.891 49 H 0.111 0.889 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.040 -16.983 -9.959 23.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.152 4.152 4 C 0.007 3.993 5 O -0.286 6.286 6 C 0.408 3.592 7 O -0.479 6.479 8 N -0.345 5.345 9 C 0.078 3.922 10 H 0.134 0.866 11 C 0.292 3.708 12 O -0.453 6.453 13 N -0.343 5.343 14 C 0.177 3.823 15 H 0.019 0.981 16 C -0.587 4.587 17 H 0.090 0.910 18 C -0.183 4.183 19 N -0.551 5.551 20 Si 0.792 3.208 21 H -0.189 1.189 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.159 4.159 25 C -0.181 4.181 26 C -0.197 4.197 27 C -0.204 4.204 28 C -0.206 4.206 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.255 0.745 39 H 0.240 0.760 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.061 0.939 43 H 0.045 0.955 44 H 0.062 0.938 45 H 0.067 0.933 46 H 0.145 0.855 47 H 0.105 0.895 48 H 0.127 0.873 49 H 0.129 0.871 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.361 -16.785 -9.593 23.500 hybrid contribution 0.968 0.520 0.650 1.277 sum -12.393 -16.265 -8.942 22.318 Atomic orbital electron populations 1.21751 0.94505 1.02417 1.02205 1.21426 0.96866 0.94333 1.03014 1.21642 0.90589 0.99045 1.03966 1.23291 0.95684 0.77402 1.02926 1.86255 1.20927 1.34798 1.86652 1.17962 0.81562 0.83889 0.75800 1.90916 1.60100 1.40171 1.56680 1.44310 1.07131 1.06103 1.76956 1.20142 0.79647 0.95303 0.97101 0.86592 1.20535 0.83605 0.87754 0.78929 1.90673 1.47361 1.56210 1.51100 1.46154 1.06533 1.20647 1.60942 1.18406 0.94396 0.78744 0.90720 0.98083 1.21551 0.99662 0.98825 1.38669 0.91024 1.25716 1.01773 0.94899 0.95933 1.70032 1.38512 1.02800 1.43736 0.85478 0.79523 0.77054 0.78758 1.18948 1.21341 1.19862 1.21773 0.94797 1.01845 0.97505 1.21679 0.97135 1.00167 0.99107 1.22622 1.02111 1.04925 0.90017 1.22996 0.96863 1.01890 0.98673 1.23336 1.03437 0.91433 1.02357 0.91691 0.92602 0.92343 0.90988 0.91351 0.90896 0.90397 0.90708 0.91374 0.74528 0.75954 0.92638 0.91113 0.93896 0.95529 0.93760 0.93302 0.85465 0.89450 0.87295 0.87098 0.88008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 71.98 0.71 -0.66 16 2 C -0.12 -1.24 5.93 30.59 0.18 -1.06 16 3 C -0.11 -1.58 5.59 30.60 0.17 -1.40 16 4 C 0.08 1.52 5.47 71.98 0.39 1.91 16 5 O -0.37 -9.20 10.27 -55.45 -0.57 -9.77 16 6 C 0.65 18.43 7.59 129.79 0.98 19.41 16 7 O -0.59 -18.28 13.16 19.81 0.26 -18.02 16 8 N -0.69 -19.38 3.49 -573.72 -2.00 -21.38 16 9 C 0.19 5.41 2.84 44.25 0.13 5.54 16 10 H 0.12 3.42 7.58 -2.39 -0.02 3.40 16 11 C 0.51 18.63 5.79 87.66 0.51 19.14 16 12 O -0.57 -24.90 12.97 -3.02 -0.04 -24.94 16 13 N -0.69 -26.83 4.80 -446.09 -2.14 -28.97 16 14 C 0.28 13.73 2.24 44.25 0.10 13.83 16 15 H 0.00 0.07 7.58 -2.38 -0.02 0.06 16 16 C -0.55 -28.13 8.73 25.60 0.22 -27.90 16 17 H 0.07 3.44 7.74 -2.91 -0.02 3.41 16 18 C 0.02 0.90 5.29 84.66 0.45 1.35 16 19 N -0.91 -51.09 11.30 21.45 0.24 -50.84 16 20 Si 0.97 41.42 29.54 68.60 2.03 43.45 16 21 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 22 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 23 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 24 C -0.12 -5.65 5.45 30.59 0.17 -5.49 16 25 C -0.12 -5.25 8.52 71.98 0.61 -4.64 16 26 C -0.18 -4.35 5.60 -10.79 -0.06 -4.41 16 27 C -0.17 -3.73 9.74 30.62 0.30 -3.43 16 28 C -0.17 -3.78 9.82 30.62 0.30 -3.48 16 29 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.07 0.69 8.14 -2.39 -0.02 0.68 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.42 11.94 7.90 -92.71 -0.73 11.21 16 39 H 0.41 13.35 8.16 -92.71 -0.76 12.59 16 40 H 0.26 14.14 8.31 -92.70 -0.77 13.37 16 41 H 0.07 3.78 5.96 -2.39 -0.01 3.76 16 42 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.03 1.22 7.85 -2.39 -0.02 1.20 16 44 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.05 1.96 5.64 -2.39 -0.01 1.95 16 46 H 0.13 2.97 7.63 -2.39 -0.02 2.95 16 47 H 0.09 2.06 6.67 -2.39 -0.02 2.04 16 48 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 49 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 50 H 0.10 2.67 5.01 -2.39 -0.01 2.66 16 Total: -1.00 -62.98 397.21 2.40 -60.58 By element: Atomic # 1 Polarization: 41.72 SS G_CDS: -0.54 Total: 41.18 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 5.17 Total: 8.72 kcal Atomic # 7 Polarization: -97.29 SS G_CDS: -3.90 Total: -101.19 kcal Atomic # 8 Polarization: -52.38 SS G_CDS: -0.35 Total: -52.73 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -62.98 2.40 -60.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186307004.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.170 kcal (2) G-P(sol) polarization free energy of solvation -62.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds