Wall clock time and date at job start Tue Mar 31 2020 15:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47138 * 2 1 4 4 H 1.08997 * 109.47410 * 54.99972 * 3 2 1 5 5 C 1.53001 * 109.46879 * 294.99969 * 3 2 1 6 6 C 1.52995 * 109.47005 * 174.99947 * 3 2 1 7 7 H 1.09000 * 109.47348 * 304.99992 * 6 3 2 8 8 N 1.46501 * 109.47106 * 184.99724 * 6 3 2 9 9 C 1.34781 * 120.00112 * 155.00279 * 8 6 3 10 10 O 1.21587 * 119.99776 * 4.97196 * 9 8 6 11 11 N 1.34772 * 120.00086 * 184.97976 * 9 8 6 12 12 C 1.46933 * 120.63044 * 354.76716 * 11 9 8 13 13 C 1.53194 * 108.89259 * 233.67977 * 12 11 9 14 14 C 1.53041 * 109.31044 * 305.29356 * 13 12 11 15 15 C 1.53037 * 109.53852 * 61.36700 * 14 13 12 16 16 H 1.08994 * 109.50150 * 58.61976 * 15 14 13 17 17 C 1.50702 * 109.49776 * 178.68384 * 15 14 13 18 18 H 1.08004 * 120.00068 * 359.97438 * 17 15 14 19 19 C 1.37874 * 120.00199 * 179.97438 * 17 15 14 20 20 N 1.31510 * 119.99823 * 0.02562 * 19 17 15 21 21 Si 1.86808 * 119.99978 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46657 * 90.00134 * 21 19 17 23 23 H 1.48500 * 109.47096 * 209.99974 * 21 19 17 24 24 H 1.48495 * 109.47040 * 330.00187 * 21 19 17 25 25 C 1.47201 * 120.81557 * 174.90991 * 11 9 8 26 26 C 1.50705 * 109.47181 * 64.99921 * 6 3 2 27 27 O 1.20823 * 120.00140 * 119.99970 * 26 6 3 28 28 O 1.34231 * 119.99693 * 299.99825 * 26 6 3 29 29 C 1.45204 * 116.99575 * 179.97438 * 28 26 6 30 30 H 1.08994 * 109.47202 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46927 * 300.00412 * 1 2 3 32 32 H 1.08997 * 109.47219 * 60.00014 * 1 2 3 33 33 H 1.08991 * 109.46903 * 239.99629 * 2 1 3 34 34 H 1.09007 * 109.46792 * 119.99764 * 2 1 3 35 35 H 1.09003 * 109.46809 * 180.02562 * 5 3 2 36 36 H 1.08997 * 109.47102 * 300.00192 * 5 3 2 37 37 H 1.09000 * 109.47412 * 60.00063 * 5 3 2 38 38 H 0.96996 * 119.99935 * 335.00129 * 8 6 3 39 39 H 1.08998 * 109.58596 * 113.81799 * 12 11 9 40 40 H 1.09004 * 109.58666 * 353.53592 * 12 11 9 41 41 H 1.08996 * 109.49932 * 65.24273 * 13 12 11 42 42 H 1.08999 * 109.49876 * 185.34428 * 13 12 11 43 43 H 1.09001 * 109.45911 * 181.38962 * 14 13 12 44 44 H 1.09003 * 109.45744 * 301.35523 * 14 13 12 45 45 H 0.97005 * 120.00082 * 180.02562 * 20 19 17 46 46 H 1.08996 * 109.53817 * 6.53347 * 25 11 9 47 47 H 1.09002 * 109.67840 * 246.22629 * 25 11 9 48 48 H 1.08992 * 109.47236 * 300.00008 * 29 28 26 49 49 H 1.09005 * 109.47130 * 60.00145 * 29 28 26 50 50 H 1.09000 * 109.46780 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4443 0.1257 7 1 3.8571 0.8800 1.0113 8 7 4.0433 2.8238 0.2457 9 6 5.2191 3.0788 0.8533 10 8 5.9252 2.1599 1.2210 11 7 5.6120 4.3524 1.0533 12 6 4.8268 5.4714 0.5145 13 6 5.7479 6.3674 -0.3196 14 6 6.9446 6.7959 0.5327 15 6 7.7352 5.5585 0.9637 16 1 8.0699 5.0147 0.0804 17 6 8.9315 5.9836 1.7758 18 1 9.1106 7.0317 1.9655 19 6 9.7972 5.0347 2.2766 20 7 9.5794 3.7585 2.0452 21 14 11.2804 5.5617 3.2826 22 1 10.9084 5.6209 4.7190 23 1 12.3793 4.5804 3.0958 24 1 11.7325 6.9027 2.8327 25 6 6.8367 4.6533 1.8123 26 6 4.1706 0.8072 -1.0984 27 8 4.9246 1.4405 -1.7986 28 8 3.8725 -0.4638 -1.4106 29 6 4.4920 -1.0120 -2.6040 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 1.9990 3.1540 -1.3076 36 1 2.0699 1.5874 -2.1492 37 1 0.5490 2.1252 -1.3970 38 1 3.5139 3.5535 -0.1120 39 1 4.4016 6.0482 1.3358 40 1 4.0247 5.0855 -0.1147 41 1 6.1007 5.8157 -1.1908 42 1 5.1986 7.2506 -0.6456 43 1 7.5889 7.4536 -0.0507 44 1 6.5896 7.3259 1.4166 45 1 10.1883 3.0908 2.3979 46 1 7.3623 3.7257 2.0389 47 1 6.5775 5.1625 2.7405 48 1 4.1973 -0.4206 -3.4708 49 1 5.5763 -0.9835 -2.4963 50 1 4.1671 -2.0434 -2.7408 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190143697.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:37 Heat of formation + Delta-G solvation = -121.881317 kcal Electronic energy + Delta-G solvation = -29986.685736 eV Core-core repulsion = 26013.975926 eV Total energy + Delta-G solvation = -3972.709810 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.88059 -39.48169 -37.49120 -36.55235 -36.24080 -33.84641 -33.07752 -31.71185 -30.11190 -29.54274 -28.49939 -26.84077 -25.01910 -24.58572 -23.70810 -21.80734 -21.68369 -20.11737 -19.93410 -18.90889 -17.69106 -17.37865 -16.80272 -16.45751 -16.10905 -15.58891 -14.95749 -14.75426 -14.54027 -14.44247 -14.05882 -13.78231 -13.67926 -13.44022 -13.32406 -12.93294 -12.78494 -12.53672 -12.41257 -12.23732 -12.15893 -12.02718 -11.88715 -11.74780 -11.15665 -10.98839 -10.95968 -10.87364 -10.81877 -10.55467 -10.48398 -10.41673 -10.34535 -10.18247 -9.83209 -9.47227 -9.04992 -8.95158 -8.89912 -8.37553 -7.63357 -5.92686 -4.02296 2.36596 2.56761 3.20453 3.34927 3.41680 3.44135 3.86912 4.33840 4.37539 4.48651 4.60654 4.65227 4.87198 5.07773 5.09671 5.16983 5.23089 5.29643 5.29950 5.36550 5.37596 5.48815 5.50581 5.54511 5.65138 5.66655 5.73472 5.78188 5.86426 6.00020 6.09088 6.20025 6.20739 6.35950 6.43787 6.59034 6.63698 6.71356 6.83769 7.03037 7.06623 7.37668 7.50021 7.78286 7.89805 7.98289 8.11028 8.45973 8.56065 9.01379 9.22728 9.62956 11.12039 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.017303 B = 0.003340 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.820833 B = 8381.094100 C = 9026.852917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.093 4.093 4 H 0.094 0.906 5 C -0.155 4.155 6 C 0.182 3.818 7 H 0.124 0.876 8 N -0.735 5.735 9 C 0.706 3.294 10 O -0.578 6.578 11 N -0.619 5.619 12 C 0.116 3.884 13 C -0.134 4.134 14 C -0.109 4.109 15 C 0.039 3.961 16 H 0.029 0.971 17 C -0.521 4.521 18 H 0.058 0.942 19 C 0.062 3.938 20 N -0.877 5.877 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.130 3.870 26 C 0.448 3.552 27 O -0.488 6.488 28 O -0.358 6.358 29 C 0.033 3.967 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.396 0.604 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.050 0.950 44 H 0.049 0.951 45 H 0.263 0.737 46 H 0.122 0.878 47 H 0.041 0.959 48 H 0.058 0.942 49 H 0.062 0.938 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.631 -5.937 -6.594 22.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.112 4.112 4 H 0.112 0.888 5 C -0.212 4.212 6 C 0.073 3.927 7 H 0.141 0.859 8 N -0.395 5.395 9 C 0.408 3.592 10 O -0.455 6.455 11 N -0.355 5.355 12 C -0.008 4.008 13 C -0.172 4.172 14 C -0.147 4.147 15 C 0.020 3.980 16 H 0.047 0.953 17 C -0.560 4.560 18 H 0.076 0.924 19 C -0.141 4.141 20 N -0.515 5.515 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.200 1.200 25 C 0.009 3.991 26 C 0.287 3.713 27 O -0.373 6.373 28 O -0.275 6.275 29 C -0.061 4.061 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.234 0.766 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.140 0.860 47 H 0.059 0.941 48 H 0.077 0.923 49 H 0.081 0.919 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -19.740 -6.598 -6.488 21.801 hybrid contribution 0.820 0.630 0.036 1.035 sum -18.920 -5.968 -6.452 20.861 Atomic orbital electron populations 1.21796 0.95527 1.01685 1.01764 1.21707 0.95865 0.94692 1.04116 1.21426 0.91127 0.98671 0.99959 0.88761 1.21980 1.02189 1.00476 0.96559 1.20318 0.93510 0.84103 0.94746 0.85874 1.45123 1.23640 1.06482 1.64252 1.15878 0.80654 0.84092 0.78619 1.90935 1.53828 1.43398 1.57330 1.47806 1.28216 1.02405 1.57050 1.21494 0.93352 0.89057 0.96919 1.21946 0.97931 0.98311 0.99045 1.21608 0.95267 0.99913 0.97876 1.18981 0.92378 0.90753 0.95911 0.95270 1.21068 1.08107 0.93007 1.33810 0.92396 1.25069 0.97804 0.95003 0.96208 1.69914 1.37231 0.99809 1.44504 0.86604 0.82626 0.78312 0.80510 1.20664 1.21258 1.19980 1.22246 0.80750 1.04009 0.92062 1.24513 0.79425 0.80159 0.87163 1.90696 1.32825 1.63243 1.50549 1.86548 1.66407 1.29455 1.45052 1.23220 0.98871 0.98652 0.85398 0.92629 0.92780 0.92611 0.89730 0.91215 0.92459 0.92663 0.91237 0.76598 0.92023 0.92377 0.92093 0.92312 0.93075 0.93197 0.92703 0.85982 0.94111 0.92275 0.91881 0.88356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.67 37.16 0.36 -0.61 16 2 C -0.13 -1.02 4.88 -26.73 -0.13 -1.15 16 3 C -0.09 -0.85 2.32 -90.62 -0.21 -1.06 16 4 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 5 C -0.15 -1.32 8.50 37.16 0.32 -1.00 16 6 C 0.18 2.51 2.25 -69.08 -0.16 2.35 16 7 H 0.12 1.81 7.65 -51.93 -0.40 1.41 16 8 N -0.74 -11.58 4.45 -59.81 -0.27 -11.84 16 9 C 0.71 15.04 8.13 -86.92 -0.71 14.33 16 10 O -0.58 -15.01 15.50 5.29 0.08 -14.93 16 11 N -0.62 -12.94 2.98 -178.27 -0.53 -13.48 16 12 C 0.12 1.86 6.38 -3.71 -0.02 1.83 16 13 C -0.13 -2.26 6.08 -26.61 -0.16 -2.42 16 14 C -0.11 -2.23 5.11 -26.69 -0.14 -2.37 16 15 C 0.04 1.00 2.25 -91.65 -0.21 0.79 16 16 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 17 C -0.52 -14.44 8.56 -34.44 -0.29 -14.73 16 18 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 19 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 20 N -0.88 -26.36 11.40 55.43 0.63 -25.73 16 21 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.13 3.24 5.42 -3.56 -0.02 3.22 16 26 C 0.45 7.00 5.76 36.01 0.21 7.21 16 27 O -0.49 -9.56 16.07 -18.75 -0.30 -9.86 16 28 O -0.36 -4.58 7.79 -39.26 -0.31 -4.88 16 29 C 0.03 0.34 10.56 101.05 1.07 1.41 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.33 6.56 -51.93 -0.34 -0.01 16 33 H 0.08 0.75 5.77 -51.93 -0.30 0.45 16 34 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.06 0.49 6.77 -51.93 -0.35 0.14 16 36 H 0.05 0.54 7.07 -51.93 -0.37 0.17 16 37 H 0.07 0.46 6.57 -51.93 -0.34 0.12 16 38 H 0.40 5.15 4.66 -40.82 -0.19 4.96 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.75 5.64 -51.93 -0.29 0.46 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 46 H 0.12 3.59 5.14 -51.93 -0.27 3.32 16 47 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 48 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 49 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 50 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 386.10 15.07 5.82 5.82 Total: -1.00 -35.24 386.10 -8.39 -43.63 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -8.31 Total: 5.17 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: -0.19 Total: 9.47 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -0.17 Total: -51.05 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -0.53 Total: -29.67 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.24 -8.39 -43.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190143697.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.252 kcal (2) G-P(sol) polarization free energy of solvation -35.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds