Wall clock time and date at job start Tue Mar 31 2020 15:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47138 * 2 1 4 4 H 1.08997 * 109.47410 * 54.99972 * 3 2 1 5 5 C 1.53001 * 109.46879 * 294.99969 * 3 2 1 6 6 C 1.52995 * 109.47005 * 174.99947 * 3 2 1 7 7 H 1.09000 * 109.47348 * 304.99992 * 6 3 2 8 8 N 1.46501 * 109.47106 * 184.99724 * 6 3 2 9 9 C 1.34781 * 120.00112 * 155.00279 * 8 6 3 10 10 O 1.21587 * 119.99776 * 4.97196 * 9 8 6 11 11 N 1.34772 * 120.00086 * 184.97976 * 9 8 6 12 12 C 1.46933 * 120.63044 * 354.76716 * 11 9 8 13 13 C 1.53194 * 108.89259 * 233.67977 * 12 11 9 14 14 C 1.53041 * 109.31044 * 305.29356 * 13 12 11 15 15 C 1.53037 * 109.53852 * 61.36700 * 14 13 12 16 16 H 1.08994 * 109.50150 * 58.61976 * 15 14 13 17 17 C 1.50702 * 109.49776 * 178.68384 * 15 14 13 18 18 H 1.08004 * 120.00068 * 359.97438 * 17 15 14 19 19 C 1.37874 * 120.00199 * 179.97438 * 17 15 14 20 20 N 1.31510 * 119.99823 * 0.02562 * 19 17 15 21 21 Si 1.86808 * 119.99978 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46657 * 90.00134 * 21 19 17 23 23 H 1.48500 * 109.47096 * 209.99974 * 21 19 17 24 24 H 1.48495 * 109.47040 * 330.00187 * 21 19 17 25 25 C 1.47201 * 120.81557 * 174.90991 * 11 9 8 26 26 C 1.50705 * 109.47181 * 64.99921 * 6 3 2 27 27 O 1.20823 * 120.00140 * 119.99970 * 26 6 3 28 28 O 1.34231 * 119.99693 * 299.99825 * 26 6 3 29 29 C 1.45204 * 116.99575 * 179.97438 * 28 26 6 30 30 H 1.08994 * 109.47202 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46927 * 300.00412 * 1 2 3 32 32 H 1.08997 * 109.47219 * 60.00014 * 1 2 3 33 33 H 1.08991 * 109.46903 * 239.99629 * 2 1 3 34 34 H 1.09007 * 109.46792 * 119.99764 * 2 1 3 35 35 H 1.09003 * 109.46809 * 180.02562 * 5 3 2 36 36 H 1.08997 * 109.47102 * 300.00192 * 5 3 2 37 37 H 1.09000 * 109.47412 * 60.00063 * 5 3 2 38 38 H 0.96996 * 119.99935 * 335.00129 * 8 6 3 39 39 H 1.08998 * 109.58596 * 113.81799 * 12 11 9 40 40 H 1.09004 * 109.58666 * 353.53592 * 12 11 9 41 41 H 1.08996 * 109.49932 * 65.24273 * 13 12 11 42 42 H 1.08999 * 109.49876 * 185.34428 * 13 12 11 43 43 H 1.09001 * 109.45911 * 181.38962 * 14 13 12 44 44 H 1.09003 * 109.45744 * 301.35523 * 14 13 12 45 45 H 0.97005 * 120.00082 * 180.02562 * 20 19 17 46 46 H 1.08996 * 109.53817 * 6.53347 * 25 11 9 47 47 H 1.09002 * 109.67840 * 246.22629 * 25 11 9 48 48 H 1.08992 * 109.47236 * 300.00008 * 29 28 26 49 49 H 1.09005 * 109.47130 * 60.00145 * 29 28 26 50 50 H 1.09000 * 109.46780 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4443 0.1257 7 1 3.8571 0.8800 1.0113 8 7 4.0433 2.8238 0.2457 9 6 5.2191 3.0788 0.8533 10 8 5.9252 2.1599 1.2210 11 7 5.6120 4.3524 1.0533 12 6 4.8268 5.4714 0.5145 13 6 5.7479 6.3674 -0.3196 14 6 6.9446 6.7959 0.5327 15 6 7.7352 5.5585 0.9637 16 1 8.0699 5.0147 0.0804 17 6 8.9315 5.9836 1.7758 18 1 9.1106 7.0317 1.9655 19 6 9.7972 5.0347 2.2766 20 7 9.5794 3.7585 2.0452 21 14 11.2804 5.5617 3.2826 22 1 10.9084 5.6209 4.7190 23 1 12.3793 4.5804 3.0958 24 1 11.7325 6.9027 2.8327 25 6 6.8367 4.6533 1.8123 26 6 4.1706 0.8072 -1.0984 27 8 4.9246 1.4405 -1.7986 28 8 3.8725 -0.4638 -1.4106 29 6 4.4920 -1.0120 -2.6040 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 1.9990 3.1540 -1.3076 36 1 2.0699 1.5874 -2.1492 37 1 0.5490 2.1252 -1.3970 38 1 3.5139 3.5535 -0.1120 39 1 4.4016 6.0482 1.3358 40 1 4.0247 5.0855 -0.1147 41 1 6.1007 5.8157 -1.1908 42 1 5.1986 7.2506 -0.6456 43 1 7.5889 7.4536 -0.0507 44 1 6.5896 7.3259 1.4166 45 1 10.1883 3.0908 2.3979 46 1 7.3623 3.7257 2.0389 47 1 6.5775 5.1625 2.7405 48 1 4.1973 -0.4206 -3.4708 49 1 5.5763 -0.9835 -2.4963 50 1 4.1671 -2.0434 -2.7408 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190143697.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:37 Heat of formation + Delta-G solvation = -144.692273 kcal Electronic energy + Delta-G solvation = -29987.674894 eV Core-core repulsion = 26013.975926 eV Total energy + Delta-G solvation = -3973.698967 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.14378 -41.00771 -38.79102 -37.87242 -37.52472 -35.50573 -34.69236 -33.39798 -31.59495 -30.75823 -29.42350 -27.86442 -26.97084 -26.00262 -24.71571 -23.48194 -22.80708 -21.57913 -21.04961 -20.45139 -19.23145 -18.57972 -18.35914 -17.85669 -17.64762 -17.01305 -16.54637 -16.09793 -15.71002 -15.63417 -15.35465 -15.24385 -14.99143 -14.77036 -14.48816 -14.35488 -14.27738 -13.91033 -13.87747 -13.54596 -13.16522 -12.91105 -12.88288 -12.82212 -12.67458 -12.56323 -12.30091 -12.24049 -11.99607 -11.89793 -11.84824 -11.73473 -11.64652 -11.53221 -11.31296 -11.28658 -10.96718 -10.85494 -10.53309 -10.39633 -9.33178 -8.09484 -6.28075 1.12802 1.34828 1.40466 1.42116 1.52377 1.85276 2.26408 2.41921 2.94750 3.18829 3.47096 3.71841 3.83069 3.98846 4.04171 4.13995 4.24641 4.26229 4.28109 4.34582 4.53368 4.58984 4.61229 4.63712 4.71198 4.75298 4.78172 4.79541 4.83932 5.02290 5.08745 5.09205 5.15439 5.22732 5.24743 5.27289 5.29232 5.32880 5.35123 5.51688 5.55561 5.62016 5.62431 5.86557 5.95288 6.10355 6.34514 6.68722 6.85585 7.02743 7.42115 7.58825 8.93555 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.017303 B = 0.003340 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.820833 B = 8381.094100 C = 9026.852917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C -0.081 4.081 4 H 0.115 0.885 5 C -0.154 4.154 6 C 0.176 3.824 7 H 0.111 0.889 8 N -0.713 5.713 9 C 0.699 3.301 10 O -0.636 6.636 11 N -0.624 5.624 12 C 0.109 3.891 13 C -0.127 4.127 14 C -0.103 4.103 15 C 0.037 3.963 16 H -0.024 1.024 17 C -0.535 4.535 18 H 0.065 0.935 19 C 0.007 3.993 20 N -0.916 5.916 21 Si 0.961 3.039 22 H -0.271 1.271 23 H -0.290 1.290 24 H -0.262 1.262 25 C 0.144 3.856 26 C 0.449 3.551 27 O -0.536 6.536 28 O -0.349 6.349 29 C 0.026 3.974 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.039 0.961 37 H 0.096 0.904 38 H 0.412 0.588 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.039 0.961 42 H 0.108 0.892 43 H 0.050 0.950 44 H 0.064 0.936 45 H 0.258 0.742 46 H 0.073 0.927 47 H 0.043 0.957 48 H 0.064 0.936 49 H 0.042 0.958 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.736 -4.475 -6.728 25.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.163 4.163 3 C -0.100 4.100 4 H 0.133 0.867 5 C -0.211 4.211 6 C 0.068 3.932 7 H 0.129 0.871 8 N -0.373 5.373 9 C 0.401 3.599 10 O -0.517 6.517 11 N -0.360 5.360 12 C -0.013 4.013 13 C -0.165 4.165 14 C -0.141 4.141 15 C 0.018 3.982 16 H -0.005 1.005 17 C -0.573 4.573 18 H 0.083 0.917 19 C -0.193 4.193 20 N -0.555 5.555 21 Si 0.786 3.214 22 H -0.197 1.197 23 H -0.216 1.216 24 H -0.186 1.186 25 C 0.021 3.979 26 C 0.291 3.709 27 O -0.425 6.425 28 O -0.264 6.264 29 C -0.068 4.068 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.114 0.886 38 H 0.253 0.747 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.058 0.942 42 H 0.126 0.874 43 H 0.069 0.931 44 H 0.083 0.917 45 H 0.067 0.933 46 H 0.091 0.909 47 H 0.061 0.939 48 H 0.083 0.917 49 H 0.061 0.939 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -22.928 -5.109 -6.654 24.415 hybrid contribution 1.768 0.098 0.008 1.771 sum -21.160 -5.012 -6.646 22.739 Atomic orbital electron populations 1.21764 0.93649 1.02362 1.02515 1.21701 0.97354 0.93649 1.03570 1.21477 0.87141 0.99999 1.01348 0.86720 1.22003 1.03826 1.00056 0.95216 1.20683 0.96537 0.82581 0.93410 0.87143 1.44847 1.21661 1.08096 1.62736 1.16142 0.81586 0.83559 0.78657 1.90890 1.55913 1.45201 1.59693 1.47717 1.27546 1.03857 1.56843 1.21890 0.93365 0.87696 0.98305 1.21916 0.96960 1.00101 0.97563 1.21495 0.96201 0.97280 0.99105 1.18915 0.92989 0.92684 0.93632 1.00543 1.21518 1.09013 0.93280 1.33536 0.91693 1.25965 1.00978 0.94846 0.97474 1.70140 1.38265 1.01093 1.45959 0.85515 0.78666 0.78143 0.79091 1.19692 1.21577 1.18618 1.21640 0.82259 1.01386 0.92571 1.24883 0.78344 0.80673 0.87023 1.90676 1.34968 1.64493 1.52366 1.86557 1.65986 1.28000 1.45907 1.23516 0.97745 1.00888 0.84616 0.92099 0.92029 0.91797 0.90592 0.91554 0.92324 0.94213 0.88572 0.74704 0.89120 0.88729 0.94213 0.87385 0.93150 0.91721 0.93275 0.90910 0.93891 0.91734 0.93913 0.84230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.67 71.98 0.70 -0.73 16 2 C -0.12 -1.78 4.88 30.60 0.15 -1.63 16 3 C -0.08 -1.31 2.32 -10.79 -0.03 -1.34 16 4 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 5 C -0.15 -2.20 8.50 71.98 0.61 -1.59 16 6 C 0.18 4.82 2.25 44.24 0.10 4.92 16 7 H 0.11 3.35 7.65 -2.39 -0.02 3.34 16 8 N -0.71 -22.14 4.45 -461.41 -2.05 -24.20 16 9 C 0.70 30.66 8.13 179.05 1.45 32.11 16 10 O -0.64 -35.13 15.50 -3.99 -0.06 -35.20 16 11 N -0.62 -26.39 2.98 -836.18 -2.50 -28.89 16 12 C 0.11 3.21 6.38 86.36 0.55 3.76 16 13 C -0.13 -3.98 6.08 30.67 0.19 -3.80 16 14 C -0.10 -4.12 5.11 30.62 0.16 -3.96 16 15 C 0.04 1.97 2.25 -11.46 -0.03 1.94 16 16 H -0.02 -1.48 8.14 -2.39 -0.02 -1.50 16 17 C -0.53 -30.38 8.56 25.60 0.22 -30.16 16 18 H 0.06 3.51 7.74 -2.91 -0.02 3.48 16 19 C 0.01 0.38 5.30 84.65 0.45 0.83 16 20 N -0.92 -58.18 11.40 21.45 0.24 -57.93 16 21 Si 0.96 45.48 29.54 68.60 2.03 47.50 16 22 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 23 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 24 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 25 C 0.14 7.50 5.42 86.31 0.47 7.97 16 26 C 0.45 14.32 5.76 71.24 0.41 14.73 16 27 O -0.54 -21.80 16.07 21.97 0.35 -21.45 16 28 O -0.35 -8.91 7.79 -51.42 -0.40 -9.31 16 29 C 0.03 0.53 10.56 113.37 1.20 1.73 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.06 0.53 6.56 -2.39 -0.02 0.52 16 33 H 0.08 1.22 5.77 -2.39 -0.01 1.21 16 34 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.06 0.82 6.77 -2.39 -0.02 0.80 16 36 H 0.04 0.70 7.07 -2.39 -0.02 0.69 16 37 H 0.10 0.89 6.57 -2.39 -0.02 0.87 16 38 H 0.41 9.81 4.66 -92.71 -0.43 9.38 16 39 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.09 2.08 5.64 -2.38 -0.01 2.07 16 41 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 45 H 0.26 15.81 8.31 -92.70 -0.77 15.04 16 46 H 0.07 4.57 5.14 -2.39 -0.01 4.56 16 47 H 0.04 2.16 8.14 -2.39 -0.02 2.14 16 48 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16 49 H 0.04 1.07 8.13 -2.38 -0.02 1.05 16 50 H 0.14 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -84.78 386.10 4.71 -80.07 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.50 Total: 24.61 kcal Atomic # 6 Polarization: 18.19 SS G_CDS: 6.60 Total: 24.79 kcal Atomic # 7 Polarization: -106.71 SS G_CDS: -4.31 Total: -111.02 kcal Atomic # 8 Polarization: -65.84 SS G_CDS: -0.11 Total: -65.95 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -84.78 4.71 -80.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190143697.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.626 kcal (2) G-P(sol) polarization free energy of solvation -84.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds