Wall clock time and date at job start Tue Mar 31 2020 15:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47404 * 2 1 4 4 H 1.09002 * 109.47028 * 54.99950 * 3 2 1 5 5 C 1.52997 * 109.46906 * 294.99824 * 3 2 1 6 6 C 1.52996 * 109.47110 * 175.00071 * 3 2 1 7 7 H 1.09003 * 109.46763 * 180.02562 * 6 3 2 8 8 N 1.46496 * 109.47520 * 60.00089 * 6 3 2 9 9 C 1.34773 * 119.99973 * 84.99489 * 8 6 3 10 10 O 1.21588 * 120.00151 * 359.73121 * 9 8 6 11 11 N 1.34784 * 119.99935 * 180.02562 * 9 8 6 12 12 C 1.46499 * 119.99893 * 179.72905 * 11 9 8 13 13 H 1.09003 * 109.41243 * 324.85445 * 12 11 9 14 14 C 1.52961 * 109.41642 * 84.64929 * 12 11 9 15 15 C 1.53220 * 109.40163 * 183.70395 * 14 12 11 16 16 C 1.51268 * 108.53806 * 305.36682 * 15 14 12 17 17 C 1.37878 * 120.85283 * 231.32795 * 16 15 14 18 18 N 1.31517 * 120.00120 * 180.02562 * 17 16 15 19 19 Si 1.86801 * 119.99775 * 0.02680 * 17 16 15 20 20 H 1.48498 * 109.47353 * 59.99979 * 19 17 16 21 21 H 1.48508 * 109.47276 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47062 * 299.99316 * 19 17 16 23 23 C 1.51269 * 118.29885 * 51.35483 * 16 15 14 24 24 C 1.52964 * 109.40799 * 205.00094 * 12 11 9 25 25 C 1.50704 * 109.47253 * 299.99399 * 6 3 2 26 26 O 1.20827 * 119.99739 * 119.99688 * 25 6 3 27 27 O 1.34223 * 120.00325 * 300.00825 * 25 6 3 28 28 C 1.45199 * 117.00057 * 179.97438 * 27 25 6 29 29 H 1.08995 * 109.46892 * 59.99942 * 1 2 3 30 30 H 1.09000 * 109.47327 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46688 * 300.00049 * 1 2 3 32 32 H 1.08999 * 109.47212 * 239.99981 * 2 1 3 33 33 H 1.09008 * 109.47175 * 120.00091 * 2 1 3 34 34 H 1.08992 * 109.47388 * 299.99909 * 5 3 2 35 35 H 1.09006 * 109.47128 * 60.00045 * 5 3 2 36 36 H 1.09003 * 109.46880 * 179.97438 * 5 3 2 37 37 H 0.97004 * 120.00009 * 265.00338 * 8 6 3 38 38 H 0.97005 * 119.99846 * 359.72693 * 11 9 8 39 39 H 1.09004 * 109.47534 * 303.68094 * 14 12 11 40 40 H 1.08990 * 109.48063 * 63.71959 * 14 12 11 41 41 H 1.09006 * 109.62217 * 185.65882 * 15 14 12 42 42 H 1.08996 * 109.79007 * 65.18016 * 15 14 12 43 43 H 0.96998 * 119.99259 * 180.02562 * 18 17 16 44 44 H 1.09005 * 109.62529 * 188.94002 * 23 16 15 45 45 H 1.08994 * 109.78451 * 68.45675 * 23 16 15 46 46 H 1.09003 * 109.48467 * 296.27275 * 24 12 11 47 47 H 1.08998 * 109.48622 * 56.31936 * 24 12 11 48 48 H 1.09005 * 109.47304 * 180.02562 * 28 27 25 49 49 H 1.08995 * 109.47336 * 299.99749 * 28 27 25 50 50 H 1.09003 * 109.47174 * 59.99615 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6354 2.1265 -1.3074 6 6 3.5649 1.4442 0.1257 7 1 3.9282 2.4720 0.1262 8 7 4.1490 0.7198 -1.0057 9 6 4.3735 1.3583 -2.1712 10 8 4.0866 2.5343 -2.2852 11 7 4.9105 0.6916 -3.2122 12 6 5.1490 1.3841 -4.4810 13 1 4.3580 2.1150 -4.6490 14 6 6.4985 2.1018 -4.4228 15 6 6.7060 2.9012 -5.7133 16 6 6.5488 1.9639 -6.8902 17 6 7.5111 1.8984 -7.8754 18 7 7.3571 1.0778 -8.8916 19 14 9.0336 2.9754 -7.7670 20 1 9.7752 2.6600 -6.5197 21 1 9.9069 2.7176 -8.9401 22 1 8.6293 4.4043 -7.7548 23 6 5.3086 1.1006 -6.9587 24 6 5.1517 0.3664 -5.6229 25 6 3.9636 0.7706 1.4135 26 8 4.6637 -0.2138 1.3887 27 8 3.5407 1.2640 2.5879 28 6 3.9632 0.5636 3.7876 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.0699 1.5875 -2.1491 35 1 0.5490 2.1252 -1.3969 36 1 1.9984 3.1543 -1.3072 37 1 4.3742 -0.2195 -0.9160 38 1 5.1391 -0.2468 -3.1214 39 1 6.5133 2.7793 -3.5690 40 1 7.2967 1.3670 -4.3179 41 1 7.7071 3.3323 -5.7199 42 1 5.9642 3.6972 -5.7777 43 1 8.0344 1.0316 -9.5845 44 1 5.4118 0.3748 -7.7654 45 1 4.4336 1.7253 -7.1381 46 1 5.9818 -0.3274 -5.4897 47 1 4.2120 -0.1860 -5.6199 48 1 3.5528 1.0646 4.6644 49 1 3.6017 -0.4642 3.7546 50 1 5.0517 0.5642 3.8445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190175608.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:43 Heat of formation + Delta-G solvation = -139.339361 kcal Electronic energy + Delta-G solvation = -29367.908106 eV Core-core repulsion = 25394.441258 eV Total energy + Delta-G solvation = -3973.466848 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.25006 -39.85043 -37.66494 -36.76619 -36.34334 -33.80368 -33.52183 -31.57589 -30.12584 -29.61190 -28.85943 -27.41104 -26.50575 -24.08958 -22.45530 -21.64590 -21.46623 -20.81344 -19.75987 -19.43177 -18.62540 -17.51414 -17.11724 -16.82616 -15.95860 -15.91467 -15.59470 -14.97539 -14.48385 -14.43744 -14.20202 -14.08942 -13.82463 -13.33442 -13.12210 -13.00028 -12.71805 -12.69504 -12.33464 -12.26857 -12.04126 -11.99843 -11.75008 -11.58844 -11.31470 -11.18655 -11.01911 -10.98525 -10.82321 -10.73683 -10.65840 -10.55171 -10.19171 -10.03198 -9.83760 -9.67996 -9.13457 -8.98531 -8.80185 -8.46439 -8.25594 -6.09491 -3.99920 1.80763 2.08979 3.00564 3.31350 3.37404 3.39830 3.46371 4.24664 4.40489 4.44724 4.49086 4.63691 4.73418 4.80052 4.82868 5.13846 5.17402 5.19385 5.26866 5.31211 5.45637 5.51835 5.73811 5.78468 5.83724 5.90673 5.92037 5.95637 6.03303 6.15109 6.23409 6.37913 6.45998 6.50547 6.55158 6.72765 6.77345 6.91520 6.96341 7.06426 7.14615 7.32123 7.35055 7.46379 7.66131 7.73197 7.82384 8.26764 8.39230 8.86126 8.97079 9.55849 11.00202 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.020617 B = 0.002801 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.758730 B = 9993.658778 C =10653.788837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.096 4.096 4 H 0.089 0.911 5 C -0.137 4.137 6 C 0.181 3.819 7 H 0.127 0.873 8 N -0.738 5.738 9 C 0.707 3.293 10 O -0.584 6.584 11 N -0.736 5.736 12 C 0.173 3.827 13 H 0.079 0.921 14 C -0.114 4.114 15 C -0.008 4.008 16 C -0.489 4.489 17 C 0.076 3.924 18 N -0.891 5.891 19 Si 0.891 3.109 20 H -0.275 1.275 21 H -0.293 1.293 22 H -0.274 1.274 23 C 0.014 3.986 24 C -0.114 4.114 25 C 0.463 3.537 26 O -0.503 6.503 27 O -0.353 6.353 28 C 0.035 3.965 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.402 0.598 38 H 0.390 0.610 39 H 0.038 0.962 40 H 0.049 0.951 41 H 0.024 0.976 42 H 0.021 0.979 43 H 0.265 0.735 44 H 0.060 0.940 45 H 0.007 0.993 46 H 0.054 0.946 47 H 0.035 0.965 48 H 0.103 0.897 49 H 0.063 0.937 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.830 -3.214 22.507 25.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.116 4.116 4 H 0.107 0.893 5 C -0.194 4.194 6 C 0.073 3.927 7 H 0.144 0.856 8 N -0.398 5.398 9 C 0.408 3.592 10 O -0.461 6.461 11 N -0.389 5.389 12 C 0.070 3.930 13 H 0.097 0.903 14 C -0.153 4.153 15 C -0.046 4.046 16 C -0.508 4.508 17 C -0.126 4.126 18 N -0.529 5.529 19 Si 0.719 3.281 20 H -0.200 1.200 21 H -0.219 1.219 22 H -0.200 1.200 23 C -0.024 4.024 24 C -0.153 4.153 25 C 0.305 3.695 26 O -0.390 6.390 27 O -0.268 6.268 28 C -0.059 4.059 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.238 0.762 38 H 0.223 0.777 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.042 0.958 42 H 0.039 0.961 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.025 0.975 46 H 0.072 0.928 47 H 0.054 0.946 48 H 0.122 0.878 49 H 0.082 0.918 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.783 -2.491 22.223 24.826 hybrid contribution 1.384 -0.631 0.400 1.573 sum -9.399 -3.122 22.623 24.696 Atomic orbital electron populations 1.21780 0.95268 1.01580 1.02125 1.21602 0.96606 0.95866 1.01803 1.21616 0.91605 0.97387 1.00973 0.89304 1.21884 1.00197 1.01565 0.95764 1.20229 0.94890 0.97405 0.80194 0.85577 1.44865 1.69522 1.14381 1.10986 1.15809 0.78372 0.85169 0.79876 1.90928 1.58264 1.14315 1.82620 1.45637 1.66531 1.13947 1.12796 1.20933 0.98000 0.94470 0.79559 0.90275 1.21918 0.95960 0.98784 0.98666 1.19587 0.96465 0.95570 0.93011 1.20048 1.04740 1.21143 1.04889 1.24829 0.97773 0.95102 0.94911 1.69823 1.35267 1.36695 1.11081 0.86655 0.82965 0.81330 0.77117 1.20034 1.21925 1.19965 1.19331 0.95015 0.96003 0.92072 1.21943 0.98867 0.97259 0.97186 1.23822 0.76827 0.82704 0.86186 1.90673 1.35110 1.25569 1.87610 1.86499 1.69505 1.55673 1.15140 1.23313 1.01085 0.97573 0.83904 0.92067 0.92871 0.92758 0.91372 0.92922 0.91916 0.92952 0.91347 0.76220 0.77681 0.94375 0.93174 0.95751 0.96085 0.92549 0.92113 0.97509 0.92773 0.94600 0.87841 0.91790 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.67 37.16 0.36 -0.82 16 2 C -0.12 -1.09 5.02 -26.73 -0.13 -1.23 16 3 C -0.10 -0.93 2.21 -90.62 -0.20 -1.13 16 4 H 0.09 0.76 8.11 -51.93 -0.42 0.33 16 5 C -0.14 -1.59 7.47 37.16 0.28 -1.31 16 6 C 0.18 2.00 2.52 -69.08 -0.17 1.83 16 7 H 0.13 1.50 7.58 -51.93 -0.39 1.11 16 8 N -0.74 -9.04 4.18 -59.81 -0.25 -9.29 16 9 C 0.71 11.01 6.89 -86.91 -0.60 10.41 16 10 O -0.58 -10.84 13.11 5.29 0.07 -10.77 16 11 N -0.74 -11.53 5.08 -58.71 -0.30 -11.83 16 12 C 0.17 3.35 2.35 -67.97 -0.16 3.19 16 13 H 0.08 1.68 7.58 -51.93 -0.39 1.29 16 14 C -0.11 -2.41 5.50 -26.64 -0.15 -2.56 16 15 C -0.01 -0.19 5.59 -27.49 -0.15 -0.35 16 16 C -0.49 -12.82 5.51 -98.92 -0.55 -13.37 16 17 C 0.08 2.09 5.46 -17.82 -0.10 1.99 16 18 N -0.89 -25.46 12.73 55.43 0.71 -24.75 16 19 Si 0.89 21.47 26.80 -169.99 -4.56 16.92 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 23 C 0.01 0.33 5.97 -27.48 -0.16 0.17 16 24 C -0.11 -2.29 5.40 -26.63 -0.14 -2.44 16 25 C 0.46 5.02 5.98 36.01 0.22 5.23 16 26 O -0.50 -6.44 15.59 -18.75 -0.29 -6.73 16 27 O -0.35 -3.25 10.47 -39.24 -0.41 -3.66 16 28 C 0.03 0.22 10.56 101.05 1.07 1.29 16 29 H 0.06 0.50 6.56 -51.93 -0.34 0.16 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.68 7.76 -51.93 -0.40 0.27 16 33 H 0.05 0.48 7.05 -51.92 -0.37 0.11 16 34 H 0.06 0.87 5.77 -51.93 -0.30 0.57 16 35 H 0.05 0.53 6.57 -51.93 -0.34 0.19 16 36 H 0.07 0.89 7.52 -51.93 -0.39 0.50 16 37 H 0.40 4.48 7.81 -40.82 -0.32 4.16 16 38 H 0.39 5.14 8.61 -40.82 -0.35 4.79 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.02 0.57 5.17 -51.93 -0.27 0.31 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.06 1.61 7.07 -51.93 -0.37 1.24 16 45 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 46 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.06 0.40 8.13 -51.93 -0.42 -0.03 16 50 H 0.06 0.43 8.13 -51.93 -0.42 0.00 16 LS Contribution 386.38 15.07 5.82 5.82 Total: -1.00 -30.53 386.38 -8.25 -38.78 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -8.44 Total: 4.60 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -0.60 Total: 0.90 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.16 Total: -45.87 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.63 Total: -21.16 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.56 Total: 16.92 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.53 -8.25 -38.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190175608.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.558 kcal (2) G-P(sol) polarization free energy of solvation -30.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds