Wall clock time and date at job start Tue Mar 31 2020 15:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47404 * 2 1 4 4 H 1.09002 * 109.47028 * 54.99950 * 3 2 1 5 5 C 1.52997 * 109.46906 * 294.99824 * 3 2 1 6 6 C 1.52996 * 109.47110 * 175.00071 * 3 2 1 7 7 H 1.09003 * 109.46763 * 180.02562 * 6 3 2 8 8 N 1.46496 * 109.47520 * 60.00089 * 6 3 2 9 9 C 1.34773 * 119.99973 * 84.99489 * 8 6 3 10 10 O 1.21588 * 120.00151 * 359.73121 * 9 8 6 11 11 N 1.34784 * 119.99935 * 180.02562 * 9 8 6 12 12 C 1.46499 * 119.99893 * 179.72905 * 11 9 8 13 13 H 1.09003 * 109.41243 * 324.85445 * 12 11 9 14 14 C 1.52961 * 109.41642 * 84.64929 * 12 11 9 15 15 C 1.53220 * 109.40163 * 183.70395 * 14 12 11 16 16 C 1.51268 * 108.53806 * 305.36682 * 15 14 12 17 17 C 1.37878 * 120.85283 * 231.32795 * 16 15 14 18 18 N 1.31517 * 120.00120 * 180.02562 * 17 16 15 19 19 Si 1.86801 * 119.99775 * 0.02680 * 17 16 15 20 20 H 1.48498 * 109.47353 * 59.99979 * 19 17 16 21 21 H 1.48508 * 109.47276 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47062 * 299.99316 * 19 17 16 23 23 C 1.51269 * 118.29885 * 51.35483 * 16 15 14 24 24 C 1.52964 * 109.40799 * 205.00094 * 12 11 9 25 25 C 1.50704 * 109.47253 * 299.99399 * 6 3 2 26 26 O 1.20827 * 119.99739 * 119.99688 * 25 6 3 27 27 O 1.34223 * 120.00325 * 300.00825 * 25 6 3 28 28 C 1.45199 * 117.00057 * 179.97438 * 27 25 6 29 29 H 1.08995 * 109.46892 * 59.99942 * 1 2 3 30 30 H 1.09000 * 109.47327 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46688 * 300.00049 * 1 2 3 32 32 H 1.08999 * 109.47212 * 239.99981 * 2 1 3 33 33 H 1.09008 * 109.47175 * 120.00091 * 2 1 3 34 34 H 1.08992 * 109.47388 * 299.99909 * 5 3 2 35 35 H 1.09006 * 109.47128 * 60.00045 * 5 3 2 36 36 H 1.09003 * 109.46880 * 179.97438 * 5 3 2 37 37 H 0.97004 * 120.00009 * 265.00338 * 8 6 3 38 38 H 0.97005 * 119.99846 * 359.72693 * 11 9 8 39 39 H 1.09004 * 109.47534 * 303.68094 * 14 12 11 40 40 H 1.08990 * 109.48063 * 63.71959 * 14 12 11 41 41 H 1.09006 * 109.62217 * 185.65882 * 15 14 12 42 42 H 1.08996 * 109.79007 * 65.18016 * 15 14 12 43 43 H 0.96998 * 119.99259 * 180.02562 * 18 17 16 44 44 H 1.09005 * 109.62529 * 188.94002 * 23 16 15 45 45 H 1.08994 * 109.78451 * 68.45675 * 23 16 15 46 46 H 1.09003 * 109.48467 * 296.27275 * 24 12 11 47 47 H 1.08998 * 109.48622 * 56.31936 * 24 12 11 48 48 H 1.09005 * 109.47304 * 180.02562 * 28 27 25 49 49 H 1.08995 * 109.47336 * 299.99749 * 28 27 25 50 50 H 1.09003 * 109.47174 * 59.99615 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6354 2.1265 -1.3074 6 6 3.5649 1.4442 0.1257 7 1 3.9282 2.4720 0.1262 8 7 4.1490 0.7198 -1.0057 9 6 4.3735 1.3583 -2.1712 10 8 4.0866 2.5343 -2.2852 11 7 4.9105 0.6916 -3.2122 12 6 5.1490 1.3841 -4.4810 13 1 4.3580 2.1150 -4.6490 14 6 6.4985 2.1018 -4.4228 15 6 6.7060 2.9012 -5.7133 16 6 6.5488 1.9639 -6.8902 17 6 7.5111 1.8984 -7.8754 18 7 7.3571 1.0778 -8.8916 19 14 9.0336 2.9754 -7.7670 20 1 9.7752 2.6600 -6.5197 21 1 9.9069 2.7176 -8.9401 22 1 8.6293 4.4043 -7.7548 23 6 5.3086 1.1006 -6.9587 24 6 5.1517 0.3664 -5.6229 25 6 3.9636 0.7706 1.4135 26 8 4.6637 -0.2138 1.3887 27 8 3.5407 1.2640 2.5879 28 6 3.9632 0.5636 3.7876 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.0699 1.5875 -2.1491 35 1 0.5490 2.1252 -1.3969 36 1 1.9984 3.1543 -1.3072 37 1 4.3742 -0.2195 -0.9160 38 1 5.1391 -0.2468 -3.1214 39 1 6.5133 2.7793 -3.5690 40 1 7.2967 1.3670 -4.3179 41 1 7.7071 3.3323 -5.7199 42 1 5.9642 3.6972 -5.7777 43 1 8.0344 1.0316 -9.5845 44 1 5.4118 0.3748 -7.7654 45 1 4.4336 1.7253 -7.1381 46 1 5.9818 -0.3274 -5.4897 47 1 4.2120 -0.1860 -5.6199 48 1 3.5528 1.0646 4.6644 49 1 3.6017 -0.4642 3.7546 50 1 5.0517 0.5642 3.8445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190175608.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:42 Heat of formation + Delta-G solvation = -158.201309 kcal Electronic energy + Delta-G solvation = -29368.726021 eV Core-core repulsion = 25394.441258 eV Total energy + Delta-G solvation = -3974.284763 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.16386 -41.00162 -38.95847 -37.79625 -37.43994 -35.31904 -34.72574 -33.28504 -31.49233 -31.01837 -29.65530 -28.85209 -27.52625 -24.86996 -24.12053 -23.29079 -22.46597 -22.09871 -21.24722 -20.55990 -19.79587 -18.34713 -18.29472 -17.75643 -17.58646 -17.07258 -16.57188 -16.40459 -16.05347 -15.47438 -15.34679 -15.06516 -14.86755 -14.78265 -14.49723 -14.19641 -13.99994 -13.90919 -13.76263 -13.46737 -13.39005 -12.94795 -12.85469 -12.74902 -12.66531 -12.55526 -12.45877 -12.17297 -11.98372 -11.86116 -11.81363 -11.80564 -11.61081 -11.53879 -11.39250 -11.21258 -10.85554 -10.66437 -10.53825 -10.21702 -9.72493 -8.17040 -6.10368 0.96330 1.20792 1.39493 1.41026 1.48499 1.95987 2.22637 2.41036 3.08798 3.27414 3.54253 3.64378 3.82911 4.05942 4.07829 4.23430 4.28487 4.31760 4.35442 4.53645 4.53950 4.56989 4.67828 4.72376 4.73111 4.77927 4.87927 4.98218 5.01586 5.09744 5.12198 5.13346 5.15475 5.18160 5.22582 5.24621 5.27223 5.34125 5.47562 5.54633 5.57384 5.62010 5.73674 5.76792 5.84694 6.01825 6.35976 6.52352 6.95105 7.10017 7.47584 7.62593 8.93644 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.020617 B = 0.002801 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.758730 B = 9993.658778 C =10653.788837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C -0.088 4.088 4 H 0.108 0.892 5 C -0.130 4.130 6 C 0.177 3.823 7 H 0.119 0.881 8 N -0.724 5.724 9 C 0.710 3.290 10 O -0.613 6.613 11 N -0.729 5.729 12 C 0.189 3.811 13 H 0.061 0.939 14 C -0.106 4.106 15 C -0.010 4.010 16 C -0.499 4.499 17 C 0.027 3.973 18 N -0.928 5.928 19 Si 0.939 3.061 20 H -0.267 1.267 21 H -0.292 1.292 22 H -0.270 1.270 23 C 0.009 3.991 24 C -0.100 4.100 25 C 0.471 3.529 26 O -0.524 6.524 27 O -0.352 6.352 28 C 0.027 3.973 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.037 0.963 35 H 0.066 0.934 36 H 0.050 0.950 37 H 0.410 0.590 38 H 0.406 0.594 39 H 0.041 0.959 40 H 0.051 0.949 41 H 0.024 0.976 42 H 0.017 0.983 43 H 0.263 0.737 44 H 0.033 0.967 45 H 0.000 1.000 46 H 0.054 0.946 47 H 0.059 0.941 48 H 0.135 0.865 49 H 0.067 0.933 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.420 -3.504 25.241 27.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.108 4.108 4 H 0.126 0.874 5 C -0.187 4.187 6 C 0.070 3.930 7 H 0.136 0.864 8 N -0.383 5.383 9 C 0.410 3.590 10 O -0.493 6.493 11 N -0.383 5.383 12 C 0.084 3.916 13 H 0.079 0.921 14 C -0.146 4.146 15 C -0.049 4.049 16 C -0.519 4.519 17 C -0.172 4.172 18 N -0.567 5.567 19 Si 0.766 3.234 20 H -0.192 1.192 21 H -0.219 1.219 22 H -0.196 1.196 23 C -0.029 4.029 24 C -0.139 4.139 25 C 0.314 3.686 26 O -0.413 6.413 27 O -0.267 6.267 28 C -0.065 4.065 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.247 0.753 38 H 0.241 0.759 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.043 0.957 42 H 0.035 0.965 43 H 0.073 0.927 44 H 0.052 0.948 45 H 0.018 0.982 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.153 0.847 49 H 0.085 0.915 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.385 -2.804 25.016 27.627 hybrid contribution 1.482 -0.524 -0.370 1.615 sum -9.903 -3.328 24.646 26.769 Atomic orbital electron populations 1.21767 0.94194 1.02139 1.02456 1.21555 0.97506 0.94983 1.01413 1.21581 0.90548 0.98056 1.00587 0.87441 1.21778 1.00899 1.00233 0.95807 1.20329 0.95774 0.96844 0.80082 0.86372 1.44665 1.68702 1.14641 1.10297 1.15806 0.78013 0.84741 0.80427 1.90917 1.59412 1.15783 1.83220 1.45248 1.66778 1.14536 1.11761 1.20465 0.96387 0.93864 0.80868 0.92096 1.21796 0.96994 0.98618 0.97150 1.19596 0.96360 0.95365 0.93537 1.20601 1.04910 1.21146 1.05207 1.25517 1.00470 0.96349 0.94854 1.69940 1.36231 1.38566 1.11999 0.85871 0.80272 0.80019 0.77278 1.19177 1.21884 1.19569 1.19293 0.94292 0.95538 0.93741 1.21700 1.00154 0.96984 0.95012 1.23604 0.76329 0.82142 0.86559 1.90668 1.36152 1.26535 1.87958 1.86488 1.69145 1.55781 1.15306 1.23630 1.01237 0.98151 0.83530 0.92499 0.92265 0.91643 0.92402 0.92640 0.94359 0.91497 0.93116 0.75299 0.75913 0.94057 0.93063 0.95722 0.96485 0.92732 0.94791 0.98187 0.92703 0.92214 0.84714 0.91466 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.67 71.98 0.70 -1.29 16 2 C -0.12 -1.87 5.02 30.59 0.15 -1.72 16 3 C -0.09 -1.55 2.21 -10.80 -0.02 -1.58 16 4 H 0.11 1.54 8.11 -2.39 -0.02 1.53 16 5 C -0.13 -2.89 7.47 71.98 0.54 -2.36 16 6 C 0.18 3.68 2.52 44.25 0.11 3.79 16 7 H 0.12 2.70 7.58 -2.39 -0.02 2.69 16 8 N -0.72 -16.79 4.18 -461.41 -1.93 -18.71 16 9 C 0.71 21.36 6.89 179.05 1.23 22.59 16 10 O -0.61 -22.52 13.11 -3.99 -0.05 -22.58 16 11 N -0.73 -21.77 5.08 -457.92 -2.33 -24.09 16 12 C 0.19 7.11 2.35 44.97 0.11 7.22 16 13 H 0.06 2.56 7.58 -2.39 -0.02 2.54 16 14 C -0.11 -4.39 5.50 30.66 0.17 -4.22 16 15 C -0.01 -0.49 5.59 30.10 0.17 -0.32 16 16 C -0.50 -26.33 5.51 -16.17 -0.09 -26.42 16 17 C 0.03 1.47 5.46 84.65 0.46 1.93 16 18 N -0.93 -54.08 12.73 21.45 0.27 -53.81 16 19 Si 0.94 44.06 26.80 68.60 1.84 45.89 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 22 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 23 C 0.01 0.46 5.97 30.11 0.18 0.64 16 24 C -0.10 -3.94 5.40 30.66 0.17 -3.77 16 25 C 0.47 9.34 5.98 71.24 0.43 9.77 16 26 O -0.52 -12.52 15.59 21.96 0.34 -12.18 16 27 O -0.35 -5.64 10.47 -51.35 -0.54 -6.18 16 28 C 0.03 0.28 10.56 113.37 1.20 1.48 16 29 H 0.06 0.81 6.56 -2.39 -0.02 0.80 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 1.05 7.76 -2.39 -0.02 1.03 16 33 H 0.05 0.87 7.05 -2.38 -0.02 0.86 16 34 H 0.04 1.04 5.77 -2.39 -0.01 1.02 16 35 H 0.07 1.26 6.57 -2.38 -0.02 1.25 16 36 H 0.05 1.30 7.52 -2.39 -0.02 1.28 16 37 H 0.41 8.44 7.81 -92.71 -0.72 7.72 16 38 H 0.41 9.82 8.61 -92.70 -0.80 9.02 16 39 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 40 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.02 1.14 5.17 -2.38 -0.01 1.12 16 42 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 44 H 0.03 1.84 7.07 -2.38 -0.02 1.82 16 45 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 46 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 48 H 0.13 0.52 8.14 -2.38 -0.02 0.51 16 49 H 0.07 0.67 8.13 -2.39 -0.02 0.65 16 50 H 0.06 0.69 8.13 -2.39 -0.02 0.67 16 Total: -1.00 -65.91 386.38 2.53 -63.38 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: -0.57 Total: 22.53 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 5.49 Total: 5.75 kcal Atomic # 7 Polarization: -92.64 SS G_CDS: -3.98 Total: -96.61 kcal Atomic # 8 Polarization: -40.69 SS G_CDS: -0.25 Total: -40.93 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.84 Total: 45.89 kcal Total: -65.91 2.53 -63.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190175608.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.823 kcal (2) G-P(sol) polarization free energy of solvation -65.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds