Wall clock time and date at job start Tue Mar 31 2020 15:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42900 * 109.46906 * 2 1 4 4 C 1.52996 * 109.47359 * 240.00295 * 2 1 3 5 5 C 1.50701 * 109.47442 * 59.99301 * 4 2 1 6 6 O 1.21282 * 119.99699 * 0.02562 * 5 4 2 7 7 N 1.34774 * 120.00247 * 180.02562 * 5 4 2 8 8 C 1.47506 * 118.75552 * 0.02562 * 7 5 4 9 9 C 1.53572 * 111.02545 * 221.62605 * 8 7 5 10 10 C 1.51534 * 109.58380 * 39.97857 * 9 8 7 11 11 O 1.42151 * 108.76755 * 268.60047 * 10 9 8 12 12 C 1.38014 * 119.43763 * 87.21796 * 11 10 9 13 13 H 1.08996 * 109.46778 * 56.57627 * 12 11 10 14 14 C 1.52999 * 109.47405 * 176.57761 * 12 11 10 15 15 N 1.46506 * 109.46684 * 300.00216 * 14 12 11 16 16 C 1.36938 * 119.99589 * 180.02562 * 15 14 12 17 17 H 1.07999 * 120.00325 * 359.97438 * 16 15 14 18 18 C 1.38815 * 119.99817 * 180.02562 * 16 15 14 19 19 N 1.31621 * 119.99673 * 359.71804 * 18 16 15 20 20 Si 1.86795 * 120.00115 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47071 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.47211 * 119.99797 * 20 18 16 23 23 H 1.48493 * 109.47327 * 239.99664 * 20 18 16 24 24 C 1.45121 * 118.75546 * 180.02562 * 7 5 4 25 25 C 1.53001 * 109.47299 * 119.99676 * 2 1 3 26 26 C 1.52994 * 117.49718 * 13.62878 * 25 2 1 27 27 C 1.52994 * 117.50004 * 305.00270 * 25 2 1 28 28 H 1.08999 * 109.47210 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47181 * 299.99670 * 1 2 3 30 30 H 1.08997 * 109.47421 * 59.99764 * 1 2 3 31 31 H 0.96707 * 113.99962 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47146 * 299.99905 * 4 2 1 33 33 H 1.08998 * 109.47616 * 179.97438 * 4 2 1 34 34 H 1.08996 * 109.16852 * 101.23243 * 8 7 5 35 35 H 1.08995 * 109.16878 * 342.02129 * 8 7 5 36 36 H 1.09007 * 109.45232 * 279.94697 * 9 8 7 37 37 H 1.09001 * 109.45668 * 160.01563 * 9 8 7 38 38 H 1.09001 * 109.59262 * 148.81548 * 10 9 8 39 39 H 1.09001 * 109.58815 * 28.38608 * 10 9 8 40 40 H 1.09000 * 109.47486 * 180.02562 * 14 12 11 41 41 H 1.09001 * 109.47362 * 59.99428 * 14 12 11 42 42 H 0.96999 * 120.00080 * 359.97438 * 15 14 12 43 43 H 0.97000 * 120.00043 * 180.02562 * 19 18 16 44 44 H 1.08999 * 109.46502 * 330.68445 * 24 7 5 45 45 H 1.09000 * 109.45631 * 210.73237 * 24 7 5 46 46 H 1.09006 * 115.54587 * 159.32976 * 25 2 1 47 47 H 1.09004 * 117.50192 * 359.97438 * 26 25 2 48 48 H 1.08997 * 117.50301 * 145.01886 * 26 25 2 49 49 H 1.09004 * 117.49751 * 214.97275 * 27 25 2 50 50 H 1.09000 * 117.49990 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 8 0.8406 0.9754 -2.3684 7 7 1.8628 -0.4716 -3.7038 8 6 2.7115 -1.6735 -3.8072 9 6 3.7630 -1.5119 -4.9148 10 6 4.3091 -0.0986 -4.8945 11 8 3.5308 0.7051 -5.7715 12 6 2.3871 1.3149 -5.2973 13 1 2.6370 1.9379 -4.4386 14 6 1.7788 2.1851 -6.3990 15 7 2.7463 3.2084 -6.8030 16 6 2.4212 4.1095 -7.7815 17 1 1.4519 4.0656 -8.2557 18 6 3.3381 5.0788 -8.1647 19 7 4.5177 5.1351 -7.5836 20 14 2.8950 6.3076 -9.5000 21 1 1.5184 6.0357 -9.9858 22 1 2.9628 7.6845 -8.9478 23 1 3.8520 6.1791 -10.6282 24 6 1.3647 0.2337 -4.8702 25 6 2.0400 -0.7212 1.2493 26 6 1.0320 -1.5509 2.0469 27 6 1.5416 -0.2212 2.6066 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 2.9703 1.4237 -0.0004 32 1 1.6767 -1.7489 -1.2493 33 1 3.1300 -0.7208 -1.2495 34 1 2.0844 -2.5362 -4.0323 35 1 3.2167 -1.8379 -2.8555 36 1 3.3034 -1.7096 -5.8833 37 1 4.5767 -2.2179 -4.7487 38 1 5.3470 -0.1029 -5.2273 39 1 4.2493 0.3017 -3.8824 40 1 0.8758 2.6670 -6.0243 41 1 1.5290 1.5621 -7.2578 42 1 3.6168 3.2480 -6.3768 43 1 5.1583 5.8126 -7.8511 44 1 0.4136 0.7083 -4.6290 45 1 1.2206 -0.4729 -5.6876 46 1 3.0643 -1.0900 1.1939 47 1 0.0054 -1.5827 1.6820 48 1 1.3929 -2.4659 2.5166 49 1 2.2378 -0.2615 3.4444 50 1 0.8500 0.6213 2.6096 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200291424.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:05 Heat of formation + Delta-G solvation = -77.370350 kcal Electronic energy + Delta-G solvation = -29541.497276 eV Core-core repulsion = 25570.717607 eV Total energy + Delta-G solvation = -3970.779670 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.83179 -39.45368 -38.11103 -35.74981 -35.49991 -34.52848 -32.87877 -31.91400 -30.86508 -29.31859 -27.83876 -26.58317 -25.14708 -24.04672 -22.72729 -22.46968 -21.67511 -20.89030 -19.91199 -19.05378 -17.63426 -17.12165 -16.81914 -16.59763 -16.37264 -16.01079 -15.72552 -15.12283 -14.85684 -14.49839 -14.20465 -14.07428 -13.74642 -13.54861 -13.27288 -13.03010 -12.98310 -12.64216 -12.56037 -12.36930 -12.07064 -11.97341 -11.81677 -11.65074 -11.48893 -11.29315 -11.05162 -10.93793 -10.82615 -10.77335 -10.74744 -10.48879 -10.22218 -10.13085 -9.94924 -9.65611 -9.48293 -9.34794 -8.78903 -8.48714 -6.79542 -5.65148 -2.92925 2.60228 2.86061 3.36617 3.50653 3.55631 3.58314 3.99033 4.07146 4.23588 4.32201 4.55503 4.58103 4.62258 4.67455 4.70840 4.74440 4.86278 4.94269 4.95362 5.16775 5.28444 5.28921 5.35842 5.38495 5.44461 5.47242 5.51498 5.55570 5.64474 5.65399 5.68180 5.74318 5.82408 5.85857 5.92740 5.99140 6.03514 6.13616 6.30465 6.38977 6.57172 6.71835 6.83891 7.26885 7.60604 7.79299 8.05134 8.20279 8.53324 9.64835 10.23744 10.59935 11.57957 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.017794 B = 0.002815 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.153791 B = 9945.354696 C =10701.006863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.180 3.820 3 O -0.535 6.535 4 C -0.165 4.165 5 C 0.506 3.494 6 O -0.508 6.508 7 N -0.613 5.613 8 C 0.106 3.894 9 C -0.168 4.168 10 C 0.075 3.925 11 O -0.367 6.367 12 C 0.090 3.910 13 H 0.051 0.949 14 C 0.166 3.834 15 N -0.725 5.725 16 C -0.235 4.235 17 H 0.070 0.930 18 C -0.016 4.016 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C 0.082 3.918 25 C -0.190 4.190 26 C -0.178 4.178 27 C -0.164 4.164 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.369 0.631 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.045 0.955 40 H 0.034 0.966 41 H 0.025 0.975 42 H 0.387 0.613 43 H 0.253 0.747 44 H 0.092 0.908 45 H 0.081 0.919 46 H 0.104 0.896 47 H 0.102 0.898 48 H 0.092 0.908 49 H 0.093 0.907 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.259 -21.265 18.631 28.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.139 3.861 3 O -0.339 6.339 4 C -0.206 4.206 5 C 0.293 3.707 6 O -0.382 6.382 7 N -0.347 5.347 8 C -0.016 4.016 9 C -0.206 4.206 10 C -0.002 4.002 11 O -0.285 6.285 12 C 0.029 3.971 13 H 0.069 0.931 14 C 0.038 3.962 15 N -0.370 5.370 16 C -0.366 4.366 17 H 0.088 0.912 18 C -0.212 4.212 19 N -0.581 5.581 20 Si 0.738 3.262 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.220 1.220 24 C -0.042 4.042 25 C -0.208 4.208 26 C -0.215 4.215 27 C -0.201 4.201 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.215 0.785 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.043 0.957 42 H 0.221 0.779 43 H 0.063 0.937 44 H 0.111 0.889 45 H 0.099 0.901 46 H 0.122 0.878 47 H 0.121 0.879 48 H 0.111 0.889 49 H 0.111 0.889 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.349 -20.502 18.370 27.869 hybrid contribution 0.899 0.195 -0.290 0.965 sum -3.450 -20.307 18.081 27.408 Atomic orbital electron populations 1.22102 0.92442 1.01739 1.04917 1.20277 0.95132 0.81763 0.88928 1.86745 1.25820 1.24703 1.96673 1.22466 1.02507 1.01464 0.94129 1.20518 0.80968 0.84824 0.84342 1.90719 1.36696 1.25059 1.85739 1.47981 1.51462 1.29077 1.06228 1.21967 0.92618 0.86940 1.00124 1.22520 0.98804 0.99348 0.99910 1.22091 0.95055 0.88878 0.94206 1.86440 1.37499 1.64996 1.39606 1.22262 0.84922 0.91953 0.97917 0.93066 1.20615 0.92727 0.89612 0.93249 1.42220 1.15781 1.33645 1.45314 1.19284 0.99086 1.06656 1.11583 0.91159 1.24736 0.96322 0.99754 1.00369 1.69692 1.06644 1.36890 1.44919 0.86110 0.77360 0.81256 0.81450 1.20587 1.21947 1.21965 1.22388 0.99197 0.95534 0.87036 1.23056 0.99380 1.04828 0.93561 1.23122 0.99583 0.95150 1.03679 1.22871 1.03708 0.97920 0.95606 0.91845 0.92176 0.88812 0.78469 0.88285 0.88902 0.91604 0.90179 0.89930 0.89800 0.89354 0.93665 0.94805 0.95672 0.77885 0.93708 0.88923 0.90100 0.87805 0.87926 0.88907 0.88898 0.88252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 7.18 37.16 0.27 -1.38 16 2 C 0.18 1.74 0.80 -90.62 -0.07 1.67 16 3 O -0.54 -6.56 11.85 -53.49 -0.63 -7.20 16 4 C -0.17 -1.42 3.29 -27.88 -0.09 -1.52 16 5 C 0.51 6.46 7.19 -10.99 -0.08 6.38 16 6 O -0.51 -8.61 12.39 -12.71 -0.16 -8.77 16 7 N -0.61 -7.32 2.19 -172.47 -0.38 -7.70 16 8 C 0.11 0.88 6.00 -3.19 -0.02 0.86 16 9 C -0.17 -1.57 5.78 -27.18 -0.16 -1.73 16 10 C 0.07 0.98 6.37 36.42 0.23 1.21 16 11 O -0.37 -6.65 9.18 -26.53 -0.24 -6.90 16 12 C 0.09 1.64 2.73 -25.78 -0.07 1.57 16 13 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 14 C 0.17 3.64 5.95 -4.04 -0.02 3.61 16 15 N -0.73 -19.83 5.49 -59.90 -0.33 -20.16 16 16 C -0.23 -6.93 9.99 -15.06 -0.15 -7.08 16 17 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 18 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 19 N -0.93 -29.48 13.06 55.49 0.72 -28.76 16 20 Si 0.91 23.29 29.55 -169.99 -5.02 18.26 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 23 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 24 C 0.08 1.19 4.86 -3.83 -0.02 1.17 16 25 C -0.19 -1.40 5.32 -90.63 -0.48 -1.88 16 26 C -0.18 -1.17 9.65 -26.73 -0.26 -1.43 16 27 C -0.16 -1.22 9.85 -26.73 -0.26 -1.49 16 28 H 0.06 0.53 6.74 -51.93 -0.35 0.18 16 29 H 0.06 0.63 6.96 -51.93 -0.36 0.27 16 30 H 0.09 1.29 5.51 -51.93 -0.29 1.01 16 31 H 0.37 3.33 9.05 45.56 0.41 3.74 16 32 H 0.10 0.65 8.04 -51.93 -0.42 0.23 16 33 H 0.09 0.63 7.41 -51.93 -0.38 0.25 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.49 5.88 -51.93 -0.31 0.18 16 36 H 0.08 0.88 8.01 -51.93 -0.42 0.46 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.04 0.59 7.40 -51.93 -0.38 0.21 16 40 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.39 11.26 7.53 -40.82 -0.31 10.96 16 43 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 44 H 0.09 1.44 7.27 -51.93 -0.38 1.06 16 45 H 0.08 1.07 8.11 -51.93 -0.42 0.65 16 46 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.10 0.67 5.89 -51.93 -0.31 0.37 16 48 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 50 H 0.10 0.85 7.29 -51.93 -0.38 0.47 16 LS Contribution 386.02 15.07 5.82 5.82 Total: -1.00 -36.26 386.02 -9.14 -45.41 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -7.63 Total: 10.60 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -1.28 Total: -0.61 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: 0.02 Total: -56.62 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -1.04 Total: -22.86 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -5.02 Total: 18.26 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.26 -9.14 -45.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200291424.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.964 kcal (2) G-P(sol) polarization free energy of solvation -36.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds