Wall clock time and date at job start Tue Mar 31 2020 15:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42900 * 109.46906 * 2 1 4 4 C 1.52996 * 109.47359 * 240.00295 * 2 1 3 5 5 C 1.50701 * 109.47442 * 59.99301 * 4 2 1 6 6 O 1.21282 * 119.99699 * 0.02562 * 5 4 2 7 7 N 1.34774 * 120.00247 * 180.02562 * 5 4 2 8 8 C 1.47506 * 118.75552 * 0.02562 * 7 5 4 9 9 C 1.53572 * 111.02545 * 221.62605 * 8 7 5 10 10 C 1.51534 * 109.58380 * 39.97857 * 9 8 7 11 11 O 1.42151 * 108.76755 * 268.60047 * 10 9 8 12 12 C 1.38014 * 119.43763 * 87.21796 * 11 10 9 13 13 H 1.08996 * 109.46778 * 56.57627 * 12 11 10 14 14 C 1.52999 * 109.47405 * 176.57761 * 12 11 10 15 15 N 1.46506 * 109.46684 * 300.00216 * 14 12 11 16 16 C 1.36938 * 119.99589 * 180.02562 * 15 14 12 17 17 H 1.07999 * 120.00325 * 359.97438 * 16 15 14 18 18 C 1.38815 * 119.99817 * 180.02562 * 16 15 14 19 19 N 1.31621 * 119.99673 * 359.71804 * 18 16 15 20 20 Si 1.86795 * 120.00115 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47071 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.47211 * 119.99797 * 20 18 16 23 23 H 1.48493 * 109.47327 * 239.99664 * 20 18 16 24 24 C 1.45121 * 118.75546 * 180.02562 * 7 5 4 25 25 C 1.53001 * 109.47299 * 119.99676 * 2 1 3 26 26 C 1.52994 * 117.49718 * 13.62878 * 25 2 1 27 27 C 1.52994 * 117.50004 * 305.00270 * 25 2 1 28 28 H 1.08999 * 109.47210 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47181 * 299.99670 * 1 2 3 30 30 H 1.08997 * 109.47421 * 59.99764 * 1 2 3 31 31 H 0.96707 * 113.99962 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47146 * 299.99905 * 4 2 1 33 33 H 1.08998 * 109.47616 * 179.97438 * 4 2 1 34 34 H 1.08996 * 109.16852 * 101.23243 * 8 7 5 35 35 H 1.08995 * 109.16878 * 342.02129 * 8 7 5 36 36 H 1.09007 * 109.45232 * 279.94697 * 9 8 7 37 37 H 1.09001 * 109.45668 * 160.01563 * 9 8 7 38 38 H 1.09001 * 109.59262 * 148.81548 * 10 9 8 39 39 H 1.09001 * 109.58815 * 28.38608 * 10 9 8 40 40 H 1.09000 * 109.47486 * 180.02562 * 14 12 11 41 41 H 1.09001 * 109.47362 * 59.99428 * 14 12 11 42 42 H 0.96999 * 120.00080 * 359.97438 * 15 14 12 43 43 H 0.97000 * 120.00043 * 180.02562 * 19 18 16 44 44 H 1.08999 * 109.46502 * 330.68445 * 24 7 5 45 45 H 1.09000 * 109.45631 * 210.73237 * 24 7 5 46 46 H 1.09006 * 115.54587 * 159.32976 * 25 2 1 47 47 H 1.09004 * 117.50192 * 359.97438 * 26 25 2 48 48 H 1.08997 * 117.50301 * 145.01886 * 26 25 2 49 49 H 1.09004 * 117.49751 * 214.97275 * 27 25 2 50 50 H 1.09000 * 117.49990 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 8 0.8406 0.9754 -2.3684 7 7 1.8628 -0.4716 -3.7038 8 6 2.7115 -1.6735 -3.8072 9 6 3.7630 -1.5119 -4.9148 10 6 4.3091 -0.0986 -4.8945 11 8 3.5308 0.7051 -5.7715 12 6 2.3871 1.3149 -5.2973 13 1 2.6370 1.9379 -4.4386 14 6 1.7788 2.1851 -6.3990 15 7 2.7463 3.2084 -6.8030 16 6 2.4212 4.1095 -7.7815 17 1 1.4519 4.0656 -8.2557 18 6 3.3381 5.0788 -8.1647 19 7 4.5177 5.1351 -7.5836 20 14 2.8950 6.3076 -9.5000 21 1 1.5184 6.0357 -9.9858 22 1 2.9628 7.6845 -8.9478 23 1 3.8520 6.1791 -10.6282 24 6 1.3647 0.2337 -4.8702 25 6 2.0400 -0.7212 1.2493 26 6 1.0320 -1.5509 2.0469 27 6 1.5416 -0.2212 2.6066 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 2.9703 1.4237 -0.0004 32 1 1.6767 -1.7489 -1.2493 33 1 3.1300 -0.7208 -1.2495 34 1 2.0844 -2.5362 -4.0323 35 1 3.2167 -1.8379 -2.8555 36 1 3.3034 -1.7096 -5.8833 37 1 4.5767 -2.2179 -4.7487 38 1 5.3470 -0.1029 -5.2273 39 1 4.2493 0.3017 -3.8824 40 1 0.8758 2.6670 -6.0243 41 1 1.5290 1.5621 -7.2578 42 1 3.6168 3.2480 -6.3768 43 1 5.1583 5.8126 -7.8511 44 1 0.4136 0.7083 -4.6290 45 1 1.2206 -0.4729 -5.6876 46 1 3.0643 -1.0900 1.1939 47 1 0.0054 -1.5827 1.6820 48 1 1.3929 -2.4659 2.5166 49 1 2.2378 -0.2615 3.4444 50 1 0.8500 0.6213 2.6096 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200291424.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:04 Heat of formation + Delta-G solvation = -103.471188 kcal Electronic energy + Delta-G solvation = -29542.629094 eV Core-core repulsion = 25570.717607 eV Total energy + Delta-G solvation = -3971.911487 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.80293 -40.39283 -39.12063 -36.90419 -36.39405 -36.14610 -34.34403 -32.79920 -32.60264 -30.53923 -29.01616 -27.59594 -26.58561 -25.16003 -24.08270 -23.21593 -22.74806 -22.27876 -20.63049 -19.97838 -19.27129 -18.47891 -17.81558 -17.68294 -17.41669 -17.04876 -16.71040 -16.30955 -16.18405 -15.62720 -15.44794 -15.15317 -14.86555 -14.82345 -14.69134 -14.37132 -13.93444 -13.88825 -13.57689 -13.35517 -13.29591 -13.12387 -12.80514 -12.79576 -12.69727 -12.58718 -12.28780 -12.13234 -12.04802 -11.96237 -11.84363 -11.73627 -11.47023 -11.39214 -11.06583 -11.00258 -10.89071 -10.55810 -10.44790 -9.56896 -9.02566 -7.95258 -5.25154 1.45523 1.47994 1.58143 1.66644 1.96509 2.55331 2.73120 2.80349 3.37010 3.38082 3.58539 3.60614 3.65312 3.86782 3.93869 3.96189 4.03293 4.09371 4.13442 4.17823 4.25318 4.31159 4.36103 4.40959 4.47587 4.54668 4.56676 4.69291 4.72415 4.79127 4.83305 4.87025 4.88305 4.94400 5.01294 5.04653 5.09186 5.13802 5.21628 5.28004 5.30374 5.43912 5.45998 5.60585 6.25416 6.36527 6.76700 6.92668 7.26748 7.31549 8.05620 8.31382 9.28935 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.017794 B = 0.002815 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.153791 B = 9945.354696 C =10701.006863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.175 3.825 3 O -0.568 6.568 4 C -0.155 4.155 5 C 0.498 3.502 6 O -0.560 6.560 7 N -0.613 5.613 8 C 0.101 3.899 9 C -0.157 4.157 10 C 0.064 3.936 11 O -0.398 6.398 12 C 0.108 3.892 13 H 0.017 0.983 14 C 0.162 3.838 15 N -0.740 5.740 16 C -0.247 4.247 17 H 0.077 0.923 18 C -0.079 4.079 19 N -0.971 5.971 20 Si 0.980 3.020 21 H -0.265 1.265 22 H -0.292 1.292 23 H -0.290 1.290 24 C 0.097 3.903 25 C -0.184 4.184 26 C -0.167 4.167 27 C -0.178 4.178 28 H 0.087 0.913 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.379 0.621 32 H 0.132 0.868 33 H 0.120 0.880 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.071 0.929 37 H 0.121 0.879 38 H 0.092 0.908 39 H 0.043 0.957 40 H 0.031 0.969 41 H 0.032 0.968 42 H 0.374 0.626 43 H 0.251 0.749 44 H 0.076 0.924 45 H 0.098 0.902 46 H 0.126 0.874 47 H 0.100 0.900 48 H 0.112 0.888 49 H 0.104 0.896 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.840 -24.475 19.228 31.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.134 3.866 3 O -0.374 6.374 4 C -0.195 4.195 5 C 0.288 3.712 6 O -0.438 6.438 7 N -0.346 5.346 8 C -0.020 4.020 9 C -0.195 4.195 10 C -0.012 4.012 11 O -0.317 6.317 12 C 0.047 3.953 13 H 0.035 0.965 14 C 0.035 3.965 15 N -0.382 5.382 16 C -0.379 4.379 17 H 0.095 0.905 18 C -0.271 4.271 19 N -0.621 5.621 20 Si 0.808 3.192 21 H -0.189 1.189 22 H -0.219 1.219 23 H -0.217 1.217 24 C -0.028 4.028 25 C -0.202 4.202 26 C -0.204 4.204 27 C -0.215 4.215 28 H 0.105 0.895 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.227 0.773 32 H 0.150 0.850 33 H 0.138 0.862 34 H 0.110 0.890 35 H 0.131 0.869 36 H 0.090 0.910 37 H 0.139 0.861 38 H 0.111 0.889 39 H 0.062 0.938 40 H 0.049 0.951 41 H 0.050 0.950 42 H 0.205 0.795 43 H 0.060 0.940 44 H 0.094 0.906 45 H 0.116 0.884 46 H 0.144 0.856 47 H 0.118 0.882 48 H 0.130 0.870 49 H 0.122 0.878 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.941 -23.779 18.975 30.676 hybrid contribution 0.773 1.172 -0.439 1.471 sum -3.168 -22.608 18.535 29.406 Atomic orbital electron populations 1.22083 0.93829 1.02552 1.02653 1.20406 0.94274 0.81166 0.90770 1.86720 1.26931 1.26871 1.96912 1.22490 1.03952 1.02114 0.90897 1.21353 0.80031 0.84300 0.85554 1.90717 1.39045 1.27535 1.86512 1.48102 1.51640 1.29759 1.05097 1.22323 0.92394 0.85815 1.01449 1.22440 1.00111 0.97058 0.99918 1.22405 0.94888 0.90578 0.93285 1.86355 1.37824 1.66014 1.41536 1.21838 0.86214 0.92367 0.94848 0.96469 1.20757 0.91891 0.89175 0.94666 1.42420 1.16093 1.34681 1.45023 1.19719 0.99332 1.07041 1.11782 0.90495 1.25664 0.96337 1.01977 1.03114 1.69863 1.07769 1.37815 1.46696 0.84981 0.77757 0.78192 0.78257 1.18904 1.21945 1.21654 1.22010 0.97096 0.94953 0.88787 1.22972 1.00545 1.04728 0.91969 1.23196 0.99306 0.95198 1.02655 1.22884 1.04081 0.98160 0.96393 0.89468 0.93065 0.92365 0.77313 0.85018 0.86203 0.89003 0.86906 0.91045 0.86094 0.88946 0.93824 0.95131 0.95007 0.79458 0.93979 0.90596 0.88382 0.85631 0.88185 0.86951 0.87795 0.90309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 7.18 71.98 0.52 -2.75 16 2 C 0.17 3.13 0.80 -10.80 -0.01 3.12 16 3 O -0.57 -14.14 11.85 -131.52 -1.56 -15.69 16 4 C -0.15 -2.18 3.29 29.85 0.10 -2.09 16 5 C 0.50 12.23 7.19 87.66 0.63 12.86 16 6 O -0.56 -19.79 12.39 14.43 0.18 -19.61 16 7 N -0.61 -13.60 2.19 -817.97 -1.79 -15.39 16 8 C 0.10 1.25 6.00 86.38 0.52 1.77 16 9 C -0.16 -2.41 5.78 30.31 0.18 -2.23 16 10 C 0.06 1.61 6.37 71.50 0.46 2.07 16 11 O -0.40 -14.64 9.18 -117.85 -1.08 -15.72 16 12 C 0.11 4.08 2.73 31.21 0.09 4.17 16 13 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 14 C 0.16 7.38 5.95 86.38 0.51 7.90 16 15 N -0.74 -42.00 5.49 -343.44 -1.88 -43.88 16 16 C -0.25 -14.90 9.99 84.03 0.84 -14.06 16 17 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 18 C -0.08 -4.82 5.50 84.86 0.47 -4.36 16 19 N -0.97 -62.94 13.06 21.65 0.28 -62.66 16 20 Si 0.98 48.50 29.55 68.60 2.03 50.53 16 21 H -0.26 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 23 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 24 C 0.10 2.80 4.86 87.26 0.42 3.23 16 25 C -0.18 -2.20 5.32 -10.80 -0.06 -2.25 16 26 C -0.17 -1.70 9.65 30.59 0.30 -1.40 16 27 C -0.18 -2.40 9.85 30.59 0.30 -2.10 16 28 H 0.09 1.34 6.74 -2.39 -0.02 1.32 16 29 H 0.05 1.12 6.96 -2.38 -0.02 1.11 16 30 H 0.06 1.69 5.51 -2.39 -0.01 1.68 16 31 H 0.38 6.83 9.05 -74.05 -0.67 6.16 16 32 H 0.13 1.04 8.04 -2.39 -0.02 1.02 16 33 H 0.12 1.09 7.41 -2.39 -0.02 1.07 16 34 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.11 0.71 5.88 -2.39 -0.01 0.69 16 36 H 0.07 1.31 8.01 -2.38 -0.02 1.29 16 37 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.09 2.19 8.14 -2.39 -0.02 2.18 16 39 H 0.04 1.09 7.40 -2.39 -0.02 1.08 16 40 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.37 22.81 7.53 -92.71 -0.70 22.11 16 43 H 0.25 15.60 8.31 -92.71 -0.77 14.83 16 44 H 0.08 2.46 7.27 -2.39 -0.02 2.44 16 45 H 0.10 2.49 8.11 -2.39 -0.02 2.47 16 46 H 0.13 1.00 8.14 -2.38 -0.02 0.98 16 47 H 0.10 1.07 5.89 -2.38 -0.01 1.06 16 48 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 50 H 0.08 1.38 7.29 -2.39 -0.02 1.37 16 Total: -1.00 -83.84 386.02 1.01 -82.84 By element: Atomic # 1 Polarization: 36.14 SS G_CDS: -0.42 Total: 35.72 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 5.25 Total: 3.87 kcal Atomic # 7 Polarization: -118.54 SS G_CDS: -3.39 Total: -121.93 kcal Atomic # 8 Polarization: -48.57 SS G_CDS: -2.46 Total: -51.03 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 2.03 Total: 50.53 kcal Total: -83.84 1.01 -82.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200291424.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.635 kcal (2) G-P(sol) polarization free energy of solvation -83.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds