Wall clock time and date at job start Tue Mar 31 2020 15:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47432 * 2 1 4 4 H 1.09006 * 110.53837 * 52.86965 * 3 2 1 5 5 C 1.54805 * 110.48814 * 290.25075 * 3 2 1 6 6 C 1.54997 * 102.09489 * 220.43933 * 5 3 2 7 7 O 1.44382 * 103.48536 * 37.02568 * 6 5 3 8 8 C 1.43751 * 106.97527 * 319.93813 * 7 6 5 9 9 H 1.08995 * 109.87598 * 266.94176 * 8 7 6 10 10 C 1.50702 * 109.87574 * 145.93991 * 8 7 6 11 11 O 1.21274 * 120.00267 * 346.09901 * 10 8 7 12 12 N 1.34773 * 119.99822 * 166.09925 * 10 8 7 13 13 C 1.47512 * 118.76007 * 354.71919 * 12 10 8 14 14 C 1.53573 * 111.03180 * 221.63038 * 13 12 10 15 15 C 1.51537 * 109.57651 * 39.97960 * 14 13 12 16 16 O 1.42161 * 108.87940 * 268.52353 * 15 14 13 17 17 C 1.38236 * 119.33844 * 87.02359 * 16 15 14 18 18 H 1.08999 * 109.37008 * 56.83900 * 17 16 15 19 19 C 1.52994 * 109.44599 * 176.75696 * 17 16 15 20 20 N 1.46502 * 109.47166 * 300.14281 * 19 17 16 21 21 C 1.36942 * 119.99619 * 180.02562 * 20 19 17 22 22 H 1.07996 * 120.00497 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99569 * 179.97438 * 21 20 19 24 24 N 1.31618 * 119.99895 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99825 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.46912 * 90.00238 * 25 23 21 27 27 H 1.48507 * 109.46808 * 209.99976 * 25 23 21 28 28 H 1.48496 * 109.47078 * 329.99675 * 25 23 21 29 29 C 1.45127 * 118.76235 * 174.70342 * 12 10 8 30 30 H 1.09004 * 109.47447 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47346 * 300.00017 * 1 2 3 32 32 H 1.09002 * 109.46826 * 59.99959 * 1 2 3 33 33 H 1.09001 * 109.46865 * 239.99820 * 2 1 3 34 34 H 1.09002 * 109.46826 * 120.00041 * 2 1 3 35 35 H 1.09002 * 110.90998 * 102.24557 * 5 3 2 36 36 H 1.09004 * 110.90766 * 338.64334 * 5 3 2 37 37 H 1.08992 * 110.61858 * 278.52930 * 6 5 3 38 38 H 1.09000 * 110.75474 * 155.58607 * 6 5 3 39 39 H 1.08999 * 109.16653 * 101.22854 * 13 12 10 40 40 H 1.08998 * 109.16483 * 342.03101 * 13 12 10 41 41 H 1.08997 * 109.45248 * 279.95042 * 14 13 12 42 42 H 1.09000 * 109.43406 * 159.99826 * 14 13 12 43 43 H 1.09004 * 109.59470 * 28.37910 * 15 14 13 44 44 H 1.09000 * 109.58907 * 148.67218 * 15 14 13 45 45 H 1.08997 * 109.47238 * 60.14164 * 19 17 16 46 46 H 1.09004 * 109.47412 * 180.14235 * 19 17 16 47 47 H 0.97001 * 119.99916 * 359.97438 * 20 19 17 48 48 H 0.97003 * 119.99474 * 179.97438 * 24 23 21 49 49 H 1.09000 * 109.46196 * 210.73170 * 29 12 10 50 50 H 1.08999 * 109.45302 * 330.69857 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5866 2.0084 0.8138 5 6 1.7474 2.1206 -1.3605 6 6 3.0476 2.9275 -1.6074 7 8 4.0834 2.0622 -1.0946 8 6 3.5765 1.4712 0.1137 9 1 3.8756 2.0709 0.9734 10 6 4.1060 0.0678 0.2589 11 8 4.6314 -0.4828 -0.6852 12 7 3.9956 -0.5754 1.4381 13 6 3.4598 0.1590 2.5998 14 6 4.2546 -0.1675 3.8727 15 6 5.7309 -0.2521 3.5418 16 8 6.0538 -1.5986 3.2201 17 6 5.9011 -2.0395 1.9188 18 1 6.4889 -1.4086 1.2521 19 6 6.3863 -3.4864 1.8110 20 7 7.7993 -3.5573 2.1912 21 6 8.4543 -4.7598 2.1709 22 1 7.9293 -5.6557 1.8742 23 6 9.7933 -4.8269 2.5307 24 7 10.4332 -3.7349 2.8918 25 14 10.6866 -6.4672 2.5037 26 1 11.2924 -6.6789 1.1645 27 1 11.7546 -6.4662 3.5356 28 1 9.7231 -7.5603 2.7896 29 6 4.4080 -1.9646 1.5171 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8932 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 0.8859 2.7843 -1.2870 36 1 1.5974 1.3758 -2.1421 37 1 3.0259 3.8681 -1.0571 38 1 3.1924 3.1103 -2.6722 39 1 2.4163 -0.1185 2.7484 40 1 3.5201 1.2298 2.4050 41 1 3.9177 -1.1224 4.2760 42 1 4.0927 0.6165 4.6124 43 1 5.9519 0.3903 2.6893 44 1 6.3174 0.0686 4.4028 45 1 5.7986 -4.1174 2.4777 46 1 6.2684 -3.8337 0.7845 47 1 8.2711 -2.7524 2.4566 48 1 11.3688 -3.7819 3.1435 49 1 3.8046 -2.4807 2.2640 50 1 4.2690 -2.4403 0.5463 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200730510.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:04 Heat of formation + Delta-G solvation = -99.178547 kcal Electronic energy + Delta-G solvation = -30072.805564 eV Core-core repulsion = 26101.080219 eV Total energy + Delta-G solvation = -3971.725344 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.29819 -39.51882 -37.95891 -35.87639 -34.89451 -34.48327 -32.83868 -30.91457 -30.75024 -30.21126 -28.38633 -26.65751 -25.25961 -24.04826 -23.21323 -22.45922 -21.81848 -20.96799 -20.87582 -18.95489 -17.60301 -17.18483 -16.92767 -16.67624 -16.38480 -15.91860 -15.66435 -15.09199 -14.86952 -14.59998 -14.36684 -14.10017 -13.95298 -13.65253 -13.53413 -13.08811 -13.00602 -12.91264 -12.59221 -12.49765 -12.27974 -12.03968 -11.96834 -11.65410 -11.60544 -11.48107 -11.38873 -11.05431 -10.92760 -10.88877 -10.76092 -10.71740 -10.31381 -10.20603 -9.96777 -9.63950 -9.45615 -9.36090 -8.77574 -8.53380 -6.78736 -5.64011 -2.91945 2.44876 2.70401 3.51693 3.55866 3.58040 3.61896 3.95932 3.99408 4.16033 4.21569 4.54858 4.57818 4.64717 4.70980 4.78236 4.80638 4.90508 4.93096 5.00339 5.07124 5.20810 5.26384 5.29890 5.35789 5.37319 5.41694 5.44653 5.47374 5.50152 5.62939 5.64889 5.68792 5.71369 5.79913 5.86454 5.94685 5.99684 6.03398 6.13985 6.39114 6.39794 6.57208 6.71841 6.84333 7.18224 7.79453 8.04410 8.10960 8.54377 9.65781 10.24833 10.61020 11.58977 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.020262 B = 0.002910 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.572557 B = 9621.033013 C = 9857.171236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.136 4.136 3 C -0.107 4.107 4 H 0.092 0.908 5 C -0.148 4.148 6 C 0.044 3.956 7 O -0.347 6.347 8 C 0.060 3.940 9 H 0.091 0.909 10 C 0.514 3.486 11 O -0.510 6.510 12 N -0.609 5.609 13 C 0.102 3.898 14 C -0.166 4.166 15 C 0.073 3.927 16 O -0.367 6.367 17 C 0.088 3.912 18 H 0.053 0.947 19 C 0.167 3.833 20 N -0.725 5.725 21 C -0.236 4.236 22 H 0.070 0.930 23 C -0.015 4.015 24 N -0.932 5.932 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 C 0.084 3.916 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.097 0.903 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.046 0.954 44 H 0.089 0.911 45 H 0.026 0.974 46 H 0.034 0.966 47 H 0.388 0.612 48 H 0.254 0.746 49 H 0.084 0.916 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.623 16.626 -2.360 29.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C -0.126 4.126 4 H 0.110 0.890 5 C -0.186 4.186 6 C -0.033 4.033 7 O -0.264 6.264 8 C -0.001 4.001 9 H 0.108 0.892 10 C 0.300 3.700 11 O -0.383 6.383 12 N -0.345 5.345 13 C -0.020 4.020 14 C -0.205 4.205 15 C -0.004 4.004 16 O -0.285 6.285 17 C 0.028 3.972 18 H 0.071 0.929 19 C 0.038 3.962 20 N -0.370 5.370 21 C -0.368 4.368 22 H 0.088 0.912 23 C -0.211 4.211 24 N -0.581 5.581 25 Si 0.738 3.262 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.039 4.039 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.115 0.885 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.064 0.936 44 H 0.107 0.893 45 H 0.044 0.956 46 H 0.052 0.948 47 H 0.222 0.778 48 H 0.063 0.937 49 H 0.102 0.898 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -24.035 15.986 -2.852 29.006 hybrid contribution 0.328 -0.216 0.079 0.400 sum -23.707 15.770 -2.773 28.608 Atomic orbital electron populations 1.21736 0.95101 1.01926 1.01687 1.21936 0.96613 0.94841 1.03917 1.22525 0.92774 0.98290 0.99061 0.88971 1.23244 0.98540 0.99859 0.96926 1.23629 0.86195 0.93104 1.00378 1.89039 1.37784 1.60796 1.38819 1.22837 0.94058 0.92914 0.90328 0.89196 1.20332 0.79050 0.87706 0.82894 1.90757 1.41478 1.67337 1.38741 1.47938 1.64564 1.12584 1.09371 1.22090 0.97649 0.96314 0.85923 1.22516 0.97350 1.03856 0.96757 1.22101 0.93600 0.84469 1.00257 1.86503 1.86691 1.26867 1.28390 1.22311 0.93147 0.97878 0.83914 0.92938 1.20608 0.87914 0.90064 0.97590 1.42213 1.05128 1.08600 1.81010 1.19238 0.92825 0.87081 1.37620 0.91213 1.24736 0.96845 0.97052 1.02484 1.69685 1.10053 1.26304 1.52060 0.86182 0.79453 0.83354 0.77169 1.21803 1.21848 1.20807 1.22405 0.97081 0.80839 1.03608 0.92484 0.92707 0.92703 0.91158 0.90144 0.89841 0.89963 0.91911 0.88499 0.91191 0.90186 0.89801 0.89668 0.93586 0.89263 0.95648 0.94846 0.77848 0.93651 0.89758 0.88975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.79 37.16 0.36 -0.57 16 2 C -0.14 -1.13 4.12 -26.73 -0.11 -1.24 16 3 C -0.11 -0.80 2.70 -89.10 -0.24 -1.05 16 4 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 5 C -0.15 -1.01 6.00 -24.73 -0.15 -1.16 16 6 C 0.04 0.35 7.72 38.21 0.29 0.65 16 7 O -0.35 -4.52 10.77 -54.40 -0.59 -5.10 16 8 C 0.06 0.64 2.96 -27.31 -0.08 0.56 16 9 H 0.09 0.78 6.35 -51.93 -0.33 0.45 16 10 C 0.51 7.23 5.04 -10.99 -0.06 7.17 16 11 O -0.51 -9.67 16.07 -13.61 -0.22 -9.89 16 12 N -0.61 -7.38 1.12 -172.47 -0.19 -7.57 16 13 C 0.10 0.85 4.96 -3.19 -0.02 0.84 16 14 C -0.17 -1.55 5.79 -27.17 -0.16 -1.71 16 15 C 0.07 0.98 6.36 36.42 0.23 1.21 16 16 O -0.37 -6.69 9.21 -27.31 -0.25 -6.95 16 17 C 0.09 1.62 2.74 -25.78 -0.07 1.55 16 18 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 19 C 0.17 3.66 5.95 -4.04 -0.02 3.63 16 20 N -0.73 -19.95 5.49 -59.91 -0.33 -20.27 16 21 C -0.24 -7.00 9.99 -15.06 -0.15 -7.15 16 22 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 23 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 24 N -0.93 -29.62 13.06 55.49 0.72 -28.89 16 25 Si 0.91 23.34 29.55 -169.99 -5.02 18.31 16 26 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 27 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 28 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 29 C 0.08 1.21 4.83 -3.83 -0.02 1.19 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.32 7.61 -51.93 -0.40 -0.07 16 33 H 0.07 0.77 7.69 -51.93 -0.40 0.37 16 34 H 0.08 0.71 4.44 -51.93 -0.23 0.48 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.64 7.78 -51.93 -0.40 0.24 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.45 7.22 -51.93 -0.37 0.08 16 40 H 0.08 0.52 5.52 -51.93 -0.29 0.24 16 41 H 0.08 0.86 8.02 -51.93 -0.42 0.44 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.64 7.40 -51.93 -0.38 0.25 16 44 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.39 11.36 7.53 -40.82 -0.31 11.06 16 48 H 0.25 7.75 8.31 -40.82 -0.34 7.41 16 49 H 0.08 1.07 8.11 -51.93 -0.42 0.65 16 50 H 0.09 1.42 7.35 -51.93 -0.38 1.04 16 LS Contribution 381.73 15.07 5.75 5.75 Total: -1.00 -36.85 381.73 -8.93 -45.77 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -8.53 Total: 5.47 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -0.28 Total: 3.37 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: 0.20 Total: -56.74 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -1.06 Total: -21.94 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.02 Total: 18.31 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.85 -8.93 -45.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200730510.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.404 kcal (2) G-P(sol) polarization free energy of solvation -36.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds