Wall clock time and date at job start Tue Mar 31 2020 15:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47432 * 2 1 4 4 H 1.09006 * 110.53837 * 52.86965 * 3 2 1 5 5 C 1.54805 * 110.48814 * 290.25075 * 3 2 1 6 6 C 1.54997 * 102.09489 * 220.43933 * 5 3 2 7 7 O 1.44382 * 103.48536 * 37.02568 * 6 5 3 8 8 C 1.43751 * 106.97527 * 319.93813 * 7 6 5 9 9 H 1.08995 * 109.87598 * 266.94176 * 8 7 6 10 10 C 1.50702 * 109.87574 * 145.93991 * 8 7 6 11 11 O 1.21274 * 120.00267 * 346.09901 * 10 8 7 12 12 N 1.34773 * 119.99822 * 166.09925 * 10 8 7 13 13 C 1.47512 * 118.76007 * 354.71919 * 12 10 8 14 14 C 1.53573 * 111.03180 * 221.63038 * 13 12 10 15 15 C 1.51537 * 109.57651 * 39.97960 * 14 13 12 16 16 O 1.42161 * 108.87940 * 268.52353 * 15 14 13 17 17 C 1.38236 * 119.33844 * 87.02359 * 16 15 14 18 18 H 1.08999 * 109.37008 * 56.83900 * 17 16 15 19 19 C 1.52994 * 109.44599 * 176.75696 * 17 16 15 20 20 N 1.46502 * 109.47166 * 300.14281 * 19 17 16 21 21 C 1.36942 * 119.99619 * 180.02562 * 20 19 17 22 22 H 1.07996 * 120.00497 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99569 * 179.97438 * 21 20 19 24 24 N 1.31618 * 119.99895 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99825 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.46912 * 90.00238 * 25 23 21 27 27 H 1.48507 * 109.46808 * 209.99976 * 25 23 21 28 28 H 1.48496 * 109.47078 * 329.99675 * 25 23 21 29 29 C 1.45127 * 118.76235 * 174.70342 * 12 10 8 30 30 H 1.09004 * 109.47447 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47346 * 300.00017 * 1 2 3 32 32 H 1.09002 * 109.46826 * 59.99959 * 1 2 3 33 33 H 1.09001 * 109.46865 * 239.99820 * 2 1 3 34 34 H 1.09002 * 109.46826 * 120.00041 * 2 1 3 35 35 H 1.09002 * 110.90998 * 102.24557 * 5 3 2 36 36 H 1.09004 * 110.90766 * 338.64334 * 5 3 2 37 37 H 1.08992 * 110.61858 * 278.52930 * 6 5 3 38 38 H 1.09000 * 110.75474 * 155.58607 * 6 5 3 39 39 H 1.08999 * 109.16653 * 101.22854 * 13 12 10 40 40 H 1.08998 * 109.16483 * 342.03101 * 13 12 10 41 41 H 1.08997 * 109.45248 * 279.95042 * 14 13 12 42 42 H 1.09000 * 109.43406 * 159.99826 * 14 13 12 43 43 H 1.09004 * 109.59470 * 28.37910 * 15 14 13 44 44 H 1.09000 * 109.58907 * 148.67218 * 15 14 13 45 45 H 1.08997 * 109.47238 * 60.14164 * 19 17 16 46 46 H 1.09004 * 109.47412 * 180.14235 * 19 17 16 47 47 H 0.97001 * 119.99916 * 359.97438 * 20 19 17 48 48 H 0.97003 * 119.99474 * 179.97438 * 24 23 21 49 49 H 1.09000 * 109.46196 * 210.73170 * 29 12 10 50 50 H 1.08999 * 109.45302 * 330.69857 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5866 2.0084 0.8138 5 6 1.7474 2.1206 -1.3605 6 6 3.0476 2.9275 -1.6074 7 8 4.0834 2.0622 -1.0946 8 6 3.5765 1.4712 0.1137 9 1 3.8756 2.0709 0.9734 10 6 4.1060 0.0678 0.2589 11 8 4.6314 -0.4828 -0.6852 12 7 3.9956 -0.5754 1.4381 13 6 3.4598 0.1590 2.5998 14 6 4.2546 -0.1675 3.8727 15 6 5.7309 -0.2521 3.5418 16 8 6.0538 -1.5986 3.2201 17 6 5.9011 -2.0395 1.9188 18 1 6.4889 -1.4086 1.2521 19 6 6.3863 -3.4864 1.8110 20 7 7.7993 -3.5573 2.1912 21 6 8.4543 -4.7598 2.1709 22 1 7.9293 -5.6557 1.8742 23 6 9.7933 -4.8269 2.5307 24 7 10.4332 -3.7349 2.8918 25 14 10.6866 -6.4672 2.5037 26 1 11.2924 -6.6789 1.1645 27 1 11.7546 -6.4662 3.5356 28 1 9.7231 -7.5603 2.7896 29 6 4.4080 -1.9646 1.5171 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8932 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 0.8859 2.7843 -1.2870 36 1 1.5974 1.3758 -2.1421 37 1 3.0259 3.8681 -1.0571 38 1 3.1924 3.1103 -2.6722 39 1 2.4163 -0.1185 2.7484 40 1 3.5201 1.2298 2.4050 41 1 3.9177 -1.1224 4.2760 42 1 4.0927 0.6165 4.6124 43 1 5.9519 0.3903 2.6893 44 1 6.3174 0.0686 4.4028 45 1 5.7986 -4.1174 2.4777 46 1 6.2684 -3.8337 0.7845 47 1 8.2711 -2.7524 2.4566 48 1 11.3688 -3.7819 3.1435 49 1 3.8046 -2.4807 2.2640 50 1 4.2690 -2.4403 0.5463 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200730510.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:03 Heat of formation + Delta-G solvation = -124.521253 kcal Electronic energy + Delta-G solvation = -30073.904506 eV Core-core repulsion = 26101.080219 eV Total energy + Delta-G solvation = -3972.824286 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.24170 -40.55147 -39.09864 -37.05461 -36.37805 -35.51683 -34.34883 -32.67886 -31.52622 -31.04808 -29.72863 -27.76205 -26.69898 -25.17679 -24.25777 -23.58707 -22.89603 -22.35028 -21.67136 -19.89343 -19.27520 -18.50066 -17.93124 -17.68316 -17.61284 -16.92543 -16.84380 -16.32124 -16.05864 -15.71803 -15.46402 -15.15339 -15.10575 -14.85970 -14.78046 -14.45977 -14.30940 -13.90890 -13.67945 -13.54853 -13.29078 -13.13977 -13.05957 -12.78230 -12.70286 -12.59839 -12.34085 -12.19953 -12.15485 -12.09421 -11.98022 -11.82758 -11.64972 -11.51963 -11.45965 -11.10710 -10.99278 -10.58478 -10.44124 -9.67850 -9.03157 -7.95197 -5.25487 1.42905 1.45414 1.49083 1.57407 1.75031 2.55138 2.70262 2.91350 3.25534 3.37839 3.42833 3.59530 3.63120 3.84386 3.90972 3.96966 4.05164 4.09002 4.14941 4.23298 4.29627 4.34505 4.39198 4.42919 4.46040 4.50998 4.51680 4.65887 4.70377 4.73095 4.79196 4.82514 4.85654 4.86972 4.98016 5.06661 5.12009 5.12409 5.18982 5.19818 5.25229 5.42040 5.45259 5.47573 5.79144 6.22417 6.25134 6.71972 7.07376 7.31093 8.05137 8.30877 9.28846 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.020262 B = 0.002910 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.572557 B = 9621.033013 C = 9857.171236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.133 4.133 3 C -0.099 4.099 4 H 0.135 0.865 5 C -0.143 4.143 6 C 0.035 3.965 7 O -0.393 6.393 8 C 0.059 3.941 9 H 0.117 0.883 10 C 0.506 3.494 11 O -0.575 6.575 12 N -0.603 5.603 13 C 0.095 3.905 14 C -0.155 4.155 15 C 0.062 3.938 16 O -0.395 6.395 17 C 0.105 3.895 18 H 0.013 0.987 19 C 0.163 3.837 20 N -0.741 5.741 21 C -0.249 4.249 22 H 0.078 0.922 23 C -0.079 4.079 24 N -0.971 5.971 25 Si 0.981 3.019 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.266 1.266 29 C 0.098 3.902 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.030 0.970 34 H 0.077 0.923 35 H 0.117 0.883 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.124 0.876 43 H 0.036 0.964 44 H 0.095 0.905 45 H 0.036 0.964 46 H 0.031 0.969 47 H 0.373 0.627 48 H 0.251 0.749 49 H 0.109 0.891 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.803 17.982 -0.715 33.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.171 4.171 3 C -0.118 4.118 4 H 0.152 0.848 5 C -0.180 4.180 6 C -0.040 4.040 7 O -0.312 6.312 8 C -0.002 4.002 9 H 0.135 0.865 10 C 0.295 3.705 11 O -0.454 6.454 12 N -0.337 5.337 13 C -0.025 4.025 14 C -0.193 4.193 15 C -0.014 4.014 16 O -0.314 6.314 17 C 0.044 3.956 18 H 0.031 0.969 19 C 0.036 3.964 20 N -0.383 5.383 21 C -0.381 4.381 22 H 0.096 0.904 23 C -0.271 4.271 24 N -0.622 5.622 25 Si 0.809 3.191 26 H -0.214 1.214 27 H -0.219 1.219 28 H -0.191 1.191 29 C -0.026 4.026 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.095 0.905 35 H 0.136 0.864 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.114 0.886 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.097 0.903 42 H 0.142 0.858 43 H 0.054 0.946 44 H 0.113 0.887 45 H 0.054 0.946 46 H 0.048 0.952 47 H 0.205 0.795 48 H 0.060 0.940 49 H 0.127 0.873 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -27.289 17.358 -1.183 32.364 hybrid contribution 1.314 -0.577 -0.436 1.500 sum -25.976 16.781 -1.619 30.967 Atomic orbital electron populations 1.21702 0.93176 1.01998 1.03007 1.21878 0.98177 0.95185 1.01839 1.22634 0.90236 0.98120 1.00813 0.84758 1.23244 0.99055 0.99709 0.96030 1.23905 0.85712 0.93616 1.00779 1.88999 1.40271 1.61919 1.40050 1.23065 0.96111 0.90403 0.90590 0.86533 1.21178 0.77865 0.89031 0.82386 1.90719 1.44525 1.69058 1.41059 1.48022 1.63612 1.11670 1.10358 1.22495 0.98902 0.97388 0.83689 1.22440 0.93660 1.05110 0.98077 1.22419 0.97151 0.81871 0.99962 1.86421 1.87717 1.29675 1.27621 1.21899 0.95233 0.94781 0.83662 0.96948 1.20752 0.85458 0.93000 0.97206 1.42423 1.07190 1.07518 1.81160 1.19700 0.93452 0.88039 1.36897 0.90376 1.25685 0.97750 1.00999 1.02659 1.69865 1.10145 1.28730 1.53450 0.85031 0.78041 0.79051 0.76958 1.21408 1.21860 1.19057 1.22072 0.94407 0.82928 1.03216 0.93157 0.90431 0.92235 0.95103 0.90490 0.86427 0.91903 0.89256 0.88587 0.87787 0.87519 0.90284 0.85766 0.94561 0.88732 0.94599 0.95153 0.79518 0.93984 0.87257 0.90651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.79 71.98 0.70 -0.66 16 2 C -0.13 -1.98 4.12 30.59 0.13 -1.86 16 3 C -0.10 -1.16 2.70 -9.81 -0.03 -1.19 16 4 H 0.13 0.53 8.14 -2.38 -0.02 0.51 16 5 C -0.14 -1.60 6.00 31.89 0.19 -1.41 16 6 C 0.04 0.52 7.72 72.67 0.56 1.08 16 7 O -0.39 -10.25 10.77 -130.65 -1.41 -11.65 16 8 C 0.06 1.17 2.96 30.22 0.09 1.26 16 9 H 0.12 1.63 6.35 -2.39 -0.02 1.61 16 10 C 0.51 14.48 5.04 87.66 0.44 14.92 16 11 O -0.58 -23.52 16.07 15.32 0.25 -23.27 16 12 N -0.60 -14.12 1.12 -817.96 -0.92 -15.04 16 13 C 0.10 1.23 4.96 86.38 0.43 1.66 16 14 C -0.15 -2.36 5.79 30.31 0.18 -2.19 16 15 C 0.06 1.62 6.36 71.50 0.46 2.08 16 16 O -0.40 -14.78 9.21 -120.63 -1.11 -15.89 16 17 C 0.10 4.07 2.74 31.21 0.09 4.15 16 18 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 19 C 0.16 7.47 5.95 86.38 0.51 7.98 16 20 N -0.74 -42.46 5.49 -343.45 -1.88 -44.34 16 21 C -0.25 -15.11 9.99 84.03 0.84 -14.27 16 22 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 23 C -0.08 -4.85 5.50 84.86 0.47 -4.38 16 24 N -0.97 -63.50 13.06 21.65 0.28 -63.21 16 25 Si 0.98 48.67 29.55 68.60 2.03 50.70 16 26 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 27 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 28 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 29 C 0.10 2.88 4.83 87.25 0.42 3.30 16 30 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.06 0.52 7.61 -2.39 -0.02 0.51 16 33 H 0.03 0.70 7.69 -2.39 -0.02 0.68 16 34 H 0.08 1.17 4.44 -2.39 -0.01 1.16 16 35 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.06 0.95 7.78 -2.39 -0.02 0.93 16 37 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.10 0.76 7.22 -2.39 -0.02 0.75 16 40 H 0.11 0.85 5.52 -2.39 -0.01 0.84 16 41 H 0.08 1.36 8.02 -2.39 -0.02 1.34 16 42 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.04 1.01 7.40 -2.39 -0.02 0.99 16 44 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.37 23.09 7.53 -92.71 -0.70 22.40 16 48 H 0.25 15.76 8.31 -92.71 -0.77 14.99 16 49 H 0.11 2.64 8.11 -2.39 -0.02 2.62 16 50 H 0.08 2.47 7.35 -2.39 -0.02 2.45 16 Total: -1.00 -87.17 381.73 2.94 -84.23 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: 0.23 Total: 28.02 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: 5.47 Total: 10.48 kcal Atomic # 7 Polarization: -120.08 SS G_CDS: -2.52 Total: -122.60 kcal Atomic # 8 Polarization: -48.55 SS G_CDS: -2.27 Total: -50.82 kcal Atomic # 14 Polarization: 48.67 SS G_CDS: 2.03 Total: 50.70 kcal Total: -87.17 2.94 -84.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200730510.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.292 kcal (2) G-P(sol) polarization free energy of solvation -87.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds