Wall clock time and date at job start Tue Mar 31 2020 14:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46788 * 2 1 4 4 C 1.52993 * 109.47039 * 240.00193 * 2 1 3 5 5 O 1.45198 * 109.47255 * 119.99937 * 2 1 3 6 6 C 1.34640 * 117.00004 * 60.00169 * 5 2 1 7 7 O 1.21515 * 119.99839 * 359.97438 * 6 5 2 8 8 N 1.34776 * 119.99819 * 179.97438 * 6 5 2 9 9 C 1.46852 * 120.22287 * 359.97438 * 8 6 5 10 10 C 1.53820 * 109.80771 * 227.03049 * 9 8 6 11 11 N 1.45641 * 107.81932 * 308.83416 * 10 9 8 12 12 C 1.46414 * 116.81492 * 186.03345 * 11 10 9 13 13 C 1.54760 * 106.03515 * 208.34708 * 12 11 10 14 14 H 1.08991 * 110.33350 * 244.54018 * 13 12 11 15 15 O 1.42893 * 110.33377 * 122.39917 * 13 12 11 16 16 C 1.42899 * 114.00051 * 91.46000 * 15 13 12 17 17 C 1.50699 * 109.47452 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00033 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99811 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00417 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99749 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.46927 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46648 * 120.00432 * 21 19 17 24 24 H 1.48499 * 109.47309 * 240.00392 * 21 19 17 25 25 C 1.55292 * 104.99567 * 3.52191 * 13 12 11 26 26 C 1.48729 * 109.85732 * 65.96374 * 11 10 9 27 27 H 1.09009 * 111.28454 * 50.88935 * 26 11 10 28 28 C 1.47660 * 120.21503 * 179.97438 * 8 6 5 29 29 H 1.09004 * 109.47112 * 299.99401 * 1 2 3 30 30 H 1.08998 * 109.47287 * 59.99813 * 1 2 3 31 31 H 1.09007 * 109.46701 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46977 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47359 * 300.00143 * 3 2 1 34 34 H 1.09004 * 109.46805 * 60.00411 * 3 2 1 35 35 H 1.08999 * 109.47259 * 299.99336 * 4 2 1 36 36 H 1.09002 * 109.47492 * 59.99603 * 4 2 1 37 37 H 1.09005 * 109.47381 * 180.02562 * 4 2 1 38 38 H 1.09001 * 109.41373 * 347.13792 * 9 8 6 39 39 H 1.08997 * 109.41667 * 106.99778 * 9 8 6 40 40 H 1.09000 * 109.78595 * 68.41187 * 10 9 8 41 41 H 1.08991 * 109.78832 * 189.24658 * 10 9 8 42 42 H 1.09008 * 110.13865 * 327.48840 * 12 11 10 43 43 H 1.08999 * 110.14394 * 89.20511 * 12 11 10 44 44 H 1.09005 * 109.47016 * 299.99542 * 16 15 13 45 45 H 1.09004 * 109.47543 * 59.99282 * 16 15 13 46 46 H 0.97006 * 120.00178 * 179.97438 * 20 19 17 47 47 H 1.08997 * 110.86346 * 264.03756 * 25 13 12 48 48 H 1.08997 * 110.86502 * 140.37089 * 25 13 12 49 49 H 1.09001 * 110.00942 * 10.43972 * 28 8 6 50 50 H 1.08995 * 110.09019 * 249.07357 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9509 -2.5095 0.5040 8 7 2.0682 -2.6657 2.4166 9 6 2.9164 -2.0215 3.4276 10 6 4.1020 -2.9382 3.7742 11 7 3.5686 -4.2556 4.0923 12 6 4.5211 -5.2525 4.5849 13 6 3.9547 -6.6297 4.1635 14 1 3.6942 -7.2174 5.0436 15 8 4.9052 -7.3330 3.3611 16 6 5.7796 -8.1826 4.1064 17 6 6.7340 -8.8711 3.1651 18 1 6.6781 -8.6794 2.1037 19 6 7.6784 -9.7458 3.6589 20 7 7.7462 -9.9797 4.9512 21 14 8.8610 -10.5999 2.4919 22 1 8.5790 -10.1696 1.0989 23 1 10.2563 -10.2377 2.8486 24 1 8.6882 -12.0707 2.6007 25 6 2.6833 -6.3043 3.3334 26 6 2.9540 -4.8581 2.8793 27 1 3.6367 -4.8219 2.0302 28 6 1.6739 -4.0781 2.5893 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 1.6768 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2490 38 1 3.2918 -1.0759 3.0364 39 1 2.3297 -1.8341 4.3269 40 1 4.7755 -3.0091 2.9202 41 1 4.6376 -2.5390 4.6354 42 1 5.4991 -5.0938 4.1304 43 1 4.5973 -5.1944 5.6707 44 1 6.3432 -7.5851 4.8229 45 1 5.1924 -8.9306 4.6393 46 1 8.4105 -10.5954 5.2986 47 1 1.7899 -6.3551 3.9557 48 1 2.5986 -6.9713 2.4755 49 1 1.2094 -4.4500 1.6760 50 1 0.9811 -4.1740 3.4252 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205611165.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:11 Heat of formation + Delta-G solvation = -113.922091 kcal Electronic energy + Delta-G solvation = -29011.934305 eV Core-core repulsion = 25039.569632 eV Total energy + Delta-G solvation = -3972.364672 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.08088 -39.75987 -37.59345 -36.50367 -35.03426 -34.00700 -32.81687 -32.34057 -29.50823 -28.29215 -27.67848 -27.61625 -26.94424 -24.99681 -23.06795 -22.47996 -22.08248 -20.51867 -20.21588 -19.33211 -17.91289 -16.86685 -16.50546 -16.41734 -16.10526 -15.60271 -15.36494 -15.06450 -14.77167 -14.62021 -14.43039 -14.08448 -13.81640 -13.63896 -13.45368 -13.19338 -12.81446 -12.66129 -12.49699 -12.30079 -12.16168 -12.13681 -11.86244 -11.73297 -11.64226 -11.51979 -11.32657 -11.26600 -11.08177 -10.91124 -10.80818 -10.76619 -10.57709 -10.33767 -10.13372 -9.98028 -9.14845 -8.97954 -8.92819 -8.32429 -8.18336 -6.15503 -4.17434 1.96525 2.71131 3.26134 3.32910 3.39205 3.59588 3.94926 4.31408 4.45280 4.49692 4.61657 4.64163 4.69546 4.78912 4.88824 5.14244 5.16993 5.18777 5.20646 5.21143 5.26825 5.29604 5.40005 5.41390 5.49105 5.55181 5.60236 5.60340 5.64787 5.70528 5.73436 5.80167 5.92790 6.03381 6.06636 6.11135 6.20499 6.25989 6.27333 6.29437 6.36159 6.89598 7.05035 7.17271 7.27675 7.37196 7.75320 8.10071 8.20023 8.51561 8.95936 9.47775 10.95844 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.020756 B = 0.002383 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.710892 B =11749.035793 C =12219.602383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.364 6.364 6 C 0.652 3.348 7 O -0.570 6.570 8 N -0.595 5.595 9 C 0.121 3.879 10 C 0.044 3.956 11 N -0.534 5.534 12 C 0.028 3.972 13 C 0.082 3.918 14 H 0.066 0.934 15 O -0.386 6.386 16 C 0.195 3.805 17 C -0.516 4.516 18 H 0.066 0.934 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.907 3.093 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.107 4.107 26 C 0.053 3.947 27 H 0.066 0.934 28 C 0.145 3.855 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.040 0.960 41 H 0.088 0.912 42 H 0.054 0.946 43 H 0.079 0.921 44 H 0.005 0.995 45 H 0.007 0.993 46 H 0.264 0.736 47 H 0.083 0.917 48 H 0.086 0.914 49 H 0.098 0.902 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.657 21.953 -4.827 26.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.279 6.279 6 C 0.407 3.593 7 O -0.460 6.460 8 N -0.335 5.335 9 C -0.002 4.002 10 C -0.085 4.085 11 N -0.260 5.260 12 C -0.099 4.099 13 C 0.022 3.978 14 H 0.084 0.916 15 O -0.306 6.306 16 C 0.121 3.879 17 C -0.554 4.554 18 H 0.084 0.916 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.734 3.266 22 H -0.195 1.195 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.146 4.146 26 C -0.056 4.056 27 H 0.084 0.916 28 C 0.024 3.976 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.058 0.942 41 H 0.106 0.894 42 H 0.073 0.927 43 H 0.098 0.902 44 H 0.023 0.977 45 H 0.025 0.975 46 H 0.073 0.927 47 H 0.101 0.899 48 H 0.104 0.896 49 H 0.117 0.883 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.084 21.884 -4.803 26.464 hybrid contribution 1.482 -0.548 -0.666 1.715 sum -12.601 21.336 -5.468 25.376 Atomic orbital electron populations 1.22508 0.94037 1.05085 1.02321 1.22055 0.94338 0.91491 0.82265 1.21855 1.02283 0.92572 1.03023 1.22516 1.01625 1.03573 0.96382 1.86288 1.71570 1.23758 1.46271 1.18012 0.78881 0.80540 0.81911 1.90883 1.41643 1.70368 1.43107 1.47173 1.52568 1.12435 1.21340 1.21809 0.91452 0.95464 0.91461 1.22345 0.95538 0.90075 1.00557 1.62993 1.32661 1.02126 1.28184 1.23168 0.94745 0.91680 1.00354 1.22891 0.89401 0.91449 0.94033 0.91599 1.87927 1.47248 1.60412 1.34973 1.20266 0.87739 0.87736 0.92201 1.21084 1.15097 1.24734 0.94469 0.91573 1.24947 0.97527 0.96556 0.95448 1.69966 1.35566 1.36190 1.11924 0.86296 0.80284 0.79120 0.80900 1.19496 1.20834 1.20768 1.22444 0.97318 0.94046 1.00761 1.23002 0.95658 0.94271 0.92655 0.91612 1.21801 0.96145 0.76624 1.02986 0.92271 0.91240 0.89339 0.91469 0.90203 0.91523 0.89314 0.91219 0.92170 0.89094 0.90726 0.94151 0.89367 0.92750 0.90234 0.97675 0.97522 0.92662 0.89873 0.89579 0.88333 0.90024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 8.37 37.16 0.31 -1.33 16 2 C 0.14 1.28 1.13 -90.62 -0.10 1.17 16 3 C -0.14 -0.94 8.85 37.16 0.33 -0.61 16 4 C -0.18 -1.78 8.37 37.15 0.31 -1.47 16 5 O -0.36 -4.21 8.52 -40.32 -0.34 -4.55 16 6 C 0.65 8.57 7.72 54.05 0.42 8.99 16 7 O -0.57 -8.51 11.30 -19.28 -0.22 -8.73 16 8 N -0.59 -7.25 3.03 -177.94 -0.54 -7.79 16 9 C 0.12 1.25 6.56 -3.42 -0.02 1.22 16 10 C 0.04 0.51 5.94 -4.08 -0.02 0.49 16 11 N -0.53 -7.25 4.65 -224.53 -1.04 -8.30 16 12 C 0.03 0.45 6.65 -3.16 -0.02 0.43 16 13 C 0.08 1.47 3.49 -24.59 -0.09 1.38 16 14 H 0.07 1.16 7.84 -51.93 -0.41 0.76 16 15 O -0.39 -9.01 9.95 -35.23 -0.35 -9.36 16 16 C 0.19 5.20 5.55 36.01 0.20 5.40 16 17 C -0.52 -15.00 9.43 -34.44 -0.32 -15.32 16 18 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16 21 Si 0.91 21.71 29.54 -169.99 -5.02 16.69 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 C -0.11 -1.55 6.34 -25.01 -0.16 -1.71 16 26 C 0.05 0.73 2.83 -66.35 -0.19 0.54 16 27 H 0.07 1.06 8.04 -51.92 -0.42 0.64 16 28 C 0.15 1.77 6.09 -3.57 -0.02 1.74 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 1.01 5.88 -51.93 -0.31 0.71 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.09 1.09 5.88 -51.93 -0.31 0.78 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.09 0.85 6.95 -51.93 -0.36 0.48 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.04 0.52 8.03 -51.93 -0.42 0.11 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.05 0.98 7.87 -51.92 -0.41 0.57 16 43 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 45 H 0.01 0.19 8.10 -51.93 -0.42 -0.23 16 46 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 47 H 0.08 1.02 8.08 -51.93 -0.42 0.60 16 48 H 0.09 1.29 8.09 -51.93 -0.42 0.87 16 49 H 0.10 1.24 7.06 -51.93 -0.37 0.88 16 50 H 0.08 0.90 8.13 -51.93 -0.42 0.48 16 LS Contribution 390.03 15.07 5.88 5.88 Total: -1.00 -31.93 390.03 -9.25 -41.18 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -8.87 Total: -1.68 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 0.52 Total: 2.46 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: -0.85 Total: -41.89 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.91 Total: -22.64 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.93 -9.25 -41.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205611165.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.743 kcal (2) G-P(sol) polarization free energy of solvation -31.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds