Wall clock time and date at job start Tue Mar 31 2020 14:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46788 * 2 1 4 4 C 1.52993 * 109.47039 * 240.00193 * 2 1 3 5 5 O 1.45198 * 109.47255 * 119.99937 * 2 1 3 6 6 C 1.34640 * 117.00004 * 60.00169 * 5 2 1 7 7 O 1.21515 * 119.99839 * 359.97438 * 6 5 2 8 8 N 1.34776 * 119.99819 * 179.97438 * 6 5 2 9 9 C 1.46852 * 120.22287 * 359.97438 * 8 6 5 10 10 C 1.53820 * 109.80771 * 227.03049 * 9 8 6 11 11 N 1.45641 * 107.81932 * 308.83416 * 10 9 8 12 12 C 1.46414 * 116.81492 * 186.03345 * 11 10 9 13 13 C 1.54760 * 106.03515 * 208.34708 * 12 11 10 14 14 H 1.08991 * 110.33350 * 244.54018 * 13 12 11 15 15 O 1.42893 * 110.33377 * 122.39917 * 13 12 11 16 16 C 1.42899 * 114.00051 * 91.46000 * 15 13 12 17 17 C 1.50699 * 109.47452 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00033 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99811 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00417 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99749 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.46927 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46648 * 120.00432 * 21 19 17 24 24 H 1.48499 * 109.47309 * 240.00392 * 21 19 17 25 25 C 1.55292 * 104.99567 * 3.52191 * 13 12 11 26 26 C 1.48729 * 109.85732 * 65.96374 * 11 10 9 27 27 H 1.09009 * 111.28454 * 50.88935 * 26 11 10 28 28 C 1.47660 * 120.21503 * 179.97438 * 8 6 5 29 29 H 1.09004 * 109.47112 * 299.99401 * 1 2 3 30 30 H 1.08998 * 109.47287 * 59.99813 * 1 2 3 31 31 H 1.09007 * 109.46701 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46977 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47359 * 300.00143 * 3 2 1 34 34 H 1.09004 * 109.46805 * 60.00411 * 3 2 1 35 35 H 1.08999 * 109.47259 * 299.99336 * 4 2 1 36 36 H 1.09002 * 109.47492 * 59.99603 * 4 2 1 37 37 H 1.09005 * 109.47381 * 180.02562 * 4 2 1 38 38 H 1.09001 * 109.41373 * 347.13792 * 9 8 6 39 39 H 1.08997 * 109.41667 * 106.99778 * 9 8 6 40 40 H 1.09000 * 109.78595 * 68.41187 * 10 9 8 41 41 H 1.08991 * 109.78832 * 189.24658 * 10 9 8 42 42 H 1.09008 * 110.13865 * 327.48840 * 12 11 10 43 43 H 1.08999 * 110.14394 * 89.20511 * 12 11 10 44 44 H 1.09005 * 109.47016 * 299.99542 * 16 15 13 45 45 H 1.09004 * 109.47543 * 59.99282 * 16 15 13 46 46 H 0.97006 * 120.00178 * 179.97438 * 20 19 17 47 47 H 1.08997 * 110.86346 * 264.03756 * 25 13 12 48 48 H 1.08997 * 110.86502 * 140.37089 * 25 13 12 49 49 H 1.09001 * 110.00942 * 10.43972 * 28 8 6 50 50 H 1.08995 * 110.09019 * 249.07357 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9509 -2.5095 0.5040 8 7 2.0682 -2.6657 2.4166 9 6 2.9164 -2.0215 3.4276 10 6 4.1020 -2.9382 3.7742 11 7 3.5686 -4.2556 4.0923 12 6 4.5211 -5.2525 4.5849 13 6 3.9547 -6.6297 4.1635 14 1 3.6942 -7.2174 5.0436 15 8 4.9052 -7.3330 3.3611 16 6 5.7796 -8.1826 4.1064 17 6 6.7340 -8.8711 3.1651 18 1 6.6781 -8.6794 2.1037 19 6 7.6784 -9.7458 3.6589 20 7 7.7462 -9.9797 4.9512 21 14 8.8610 -10.5999 2.4919 22 1 8.5790 -10.1696 1.0989 23 1 10.2563 -10.2377 2.8486 24 1 8.6882 -12.0707 2.6007 25 6 2.6833 -6.3043 3.3334 26 6 2.9540 -4.8581 2.8793 27 1 3.6367 -4.8219 2.0302 28 6 1.6739 -4.0781 2.5893 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 1.6768 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2490 38 1 3.2918 -1.0759 3.0364 39 1 2.3297 -1.8341 4.3269 40 1 4.7755 -3.0091 2.9202 41 1 4.6376 -2.5390 4.6354 42 1 5.4991 -5.0938 4.1304 43 1 4.5973 -5.1944 5.6707 44 1 6.3432 -7.5851 4.8229 45 1 5.1924 -8.9306 4.6393 46 1 8.4105 -10.5954 5.2986 47 1 1.7899 -6.3551 3.9557 48 1 2.5986 -6.9713 2.4755 49 1 1.2094 -4.4500 1.6760 50 1 0.9811 -4.1740 3.4252 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205611165.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:09 Heat of formation + Delta-G solvation = -134.853966 kcal Electronic energy + Delta-G solvation = -29012.841979 eV Core-core repulsion = 25039.569632 eV Total energy + Delta-G solvation = -3973.272346 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.04132 -40.90127 -38.80412 -37.81350 -36.25780 -34.98922 -34.71378 -33.53598 -30.84028 -29.59434 -28.81263 -28.35185 -28.27007 -26.10909 -24.66861 -24.00159 -23.06552 -21.86187 -21.29909 -20.25441 -18.87903 -18.67464 -17.79634 -17.71343 -17.28332 -16.93882 -16.45054 -16.34749 -16.24944 -15.67721 -15.46832 -15.39469 -14.97534 -14.92354 -14.70677 -14.39230 -14.03676 -13.64488 -13.58129 -13.39895 -13.15856 -13.07270 -12.97325 -12.87427 -12.85118 -12.65386 -12.52298 -12.45412 -12.34850 -12.31382 -12.24065 -12.15894 -11.94085 -11.63044 -11.38298 -11.26745 -11.06742 -10.91102 -10.25563 -9.99599 -9.43259 -8.35052 -6.47226 1.07048 1.37674 1.38541 1.53114 1.71794 2.31541 2.68898 2.84008 2.98605 3.17632 3.50206 3.62994 3.75239 3.77988 3.81559 3.96449 4.04606 4.09554 4.21785 4.23919 4.28664 4.41927 4.57573 4.58481 4.63020 4.64844 4.71521 4.73494 4.77810 4.79659 4.80983 4.84994 4.87221 4.89676 4.97821 5.04591 5.08436 5.13126 5.18895 5.29028 5.29819 5.38601 5.45472 5.52583 5.70605 5.94101 6.04278 6.28257 6.52055 6.80487 7.23024 7.24826 8.77054 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.020756 B = 0.002383 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.710892 B =11749.035793 C =12219.602383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.124 3.876 3 C -0.134 4.134 4 C -0.181 4.181 5 O -0.365 6.365 6 C 0.648 3.352 7 O -0.593 6.593 8 N -0.599 5.599 9 C 0.127 3.873 10 C 0.042 3.958 11 N -0.523 5.523 12 C 0.037 3.963 13 C 0.065 3.935 14 H 0.068 0.932 15 O -0.403 6.403 16 C 0.212 3.788 17 C -0.550 4.550 18 H 0.057 0.943 19 C 0.008 3.992 20 N -0.927 5.927 21 Si 0.980 3.020 22 H -0.267 1.267 23 H -0.271 1.271 24 H -0.270 1.270 25 C -0.098 4.098 26 C 0.058 3.942 27 H 0.036 0.964 28 C 0.154 3.846 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.091 0.909 37 H 0.056 0.944 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.023 0.977 41 H 0.108 0.892 42 H 0.028 0.972 43 H 0.093 0.907 44 H -0.012 1.012 45 H -0.011 1.011 46 H 0.271 0.729 47 H 0.115 0.885 48 H 0.077 0.923 49 H 0.091 0.909 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.079 23.593 -5.024 27.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.088 3.912 3 C -0.191 4.191 4 C -0.238 4.238 5 O -0.280 6.280 6 C 0.403 3.597 7 O -0.484 6.484 8 N -0.339 5.339 9 C 0.005 3.995 10 C -0.086 4.086 11 N -0.248 5.248 12 C -0.092 4.092 13 C 0.006 3.994 14 H 0.086 0.914 15 O -0.323 6.323 16 C 0.137 3.863 17 C -0.587 4.587 18 H 0.075 0.925 19 C -0.191 4.191 20 N -0.566 5.566 21 Si 0.803 3.197 22 H -0.192 1.192 23 H -0.196 1.196 24 H -0.195 1.195 25 C -0.136 4.136 26 C -0.051 4.051 27 H 0.054 0.946 28 C 0.032 3.968 29 H 0.083 0.917 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.120 0.880 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.110 0.890 37 H 0.075 0.925 38 H 0.122 0.878 39 H 0.111 0.889 40 H 0.041 0.959 41 H 0.127 0.873 42 H 0.046 0.954 43 H 0.111 0.889 44 H 0.006 0.994 45 H 0.007 0.993 46 H 0.080 0.920 47 H 0.133 0.867 48 H 0.096 0.904 49 H 0.110 0.890 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -14.518 23.558 -4.988 28.118 hybrid contribution 1.571 -0.992 -0.602 1.954 sum -12.946 22.566 -5.590 26.609 Atomic orbital electron populations 1.22452 0.93712 1.03630 1.03654 1.22424 0.94791 0.92702 0.81326 1.21875 1.02299 0.90510 1.04453 1.22479 1.01360 1.02199 0.97771 1.86296 1.71519 1.22855 1.47295 1.18166 0.78735 0.81063 0.81751 1.90880 1.42677 1.70975 1.43886 1.47285 1.52675 1.12403 1.21541 1.21894 0.90740 0.95206 0.91702 1.22479 0.96179 0.89232 1.00760 1.63075 1.31650 1.02306 1.27777 1.23007 0.93817 0.91352 1.00980 1.23293 0.89763 0.91884 0.94427 0.91410 1.87881 1.47938 1.60492 1.35949 1.19842 0.87585 0.87352 0.91505 1.21399 1.16691 1.26202 0.94434 0.92467 1.25915 0.99015 0.96810 0.97319 1.70059 1.36316 1.36562 1.13687 0.85180 0.77886 0.78170 0.78448 1.19154 1.19596 1.19482 1.22450 0.96628 0.94113 1.00450 1.22889 0.96078 0.94395 0.91742 0.94557 1.21700 0.95108 0.76551 1.03394 0.91701 0.89137 0.92090 0.91460 0.88004 0.90857 0.92252 0.88995 0.92481 0.87816 0.88880 0.95909 0.87338 0.95391 0.88860 0.99419 0.99294 0.91977 0.86714 0.90401 0.89021 0.88043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.95 8.37 71.98 0.60 -2.35 16 2 C 0.12 2.16 1.13 -10.79 -0.01 2.15 16 3 C -0.13 -1.45 8.85 71.98 0.64 -0.81 16 4 C -0.18 -3.38 8.37 71.98 0.60 -2.78 16 5 O -0.37 -8.03 8.52 -55.49 -0.47 -8.50 16 6 C 0.65 16.73 7.72 129.79 1.00 17.74 16 7 O -0.59 -17.92 11.30 19.79 0.22 -17.69 16 8 N -0.60 -13.99 3.03 -947.29 -2.87 -16.85 16 9 C 0.13 2.36 6.56 86.59 0.57 2.93 16 10 C 0.04 0.94 5.94 86.82 0.52 1.45 16 11 N -0.52 -13.76 4.65 -864.27 -4.02 -17.78 16 12 C 0.04 1.19 6.65 87.00 0.58 1.76 16 13 C 0.07 2.38 3.49 31.98 0.11 2.49 16 14 H 0.07 2.43 7.84 -2.39 -0.02 2.42 16 15 O -0.40 -19.59 9.95 -148.98 -1.48 -21.07 16 16 C 0.21 11.81 5.55 71.24 0.40 12.21 16 17 C -0.55 -32.87 9.43 25.60 0.24 -32.63 16 18 H 0.06 3.43 7.81 -2.91 -0.02 3.41 16 19 C 0.01 0.48 5.46 84.65 0.46 0.94 16 20 N -0.93 -55.36 13.29 21.45 0.28 -55.08 16 21 Si 0.98 44.54 29.54 68.60 2.03 46.57 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 25 C -0.10 -2.82 6.34 31.71 0.20 -2.62 16 26 C 0.06 1.60 2.83 44.79 0.13 1.73 16 27 H 0.04 1.22 8.04 -2.38 -0.02 1.20 16 28 C 0.15 3.58 6.09 86.05 0.52 4.11 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 1.38 5.88 -2.38 -0.01 1.37 16 32 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.06 1.48 5.88 -2.39 -0.01 1.47 16 36 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.10 1.70 6.95 -2.39 -0.02 1.69 16 39 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.02 0.59 8.03 -2.39 -0.02 0.57 16 41 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.03 1.05 7.87 -2.38 -0.02 1.03 16 43 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 44 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 45 H -0.01 -0.62 8.10 -2.38 -0.02 -0.64 16 46 H 0.27 14.96 8.31 -92.70 -0.77 14.19 16 47 H 0.11 2.58 8.08 -2.39 -0.02 2.56 16 48 H 0.08 2.37 8.09 -2.39 -0.02 2.36 16 49 H 0.09 2.30 7.06 -2.39 -0.02 2.28 16 50 H 0.10 2.01 8.13 -2.39 -0.02 1.99 16 Total: -1.00 -70.82 390.03 1.15 -69.67 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.90 Total: 14.43 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: 6.56 Total: 6.32 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -6.60 Total: -89.71 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: -1.73 Total: -47.27 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -70.82 1.15 -69.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205611165.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.188 kcal (2) G-P(sol) polarization free energy of solvation -70.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds