Wall clock time and date at job start Tue Mar 31 2020 14:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47076 * 2 1 4 4 C 1.53000 * 109.47059 * 240.00399 * 2 1 3 5 5 O 1.45195 * 109.47297 * 119.99983 * 2 1 3 6 6 C 1.34636 * 116.99818 * 60.00122 * 5 2 1 7 7 O 1.21516 * 120.00144 * 0.02562 * 6 5 2 8 8 N 1.34776 * 120.00175 * 179.97438 * 6 5 2 9 9 C 1.46898 * 120.24996 * 359.87867 * 8 6 5 10 10 C 1.53807 * 109.94351 * 226.79932 * 9 8 6 11 11 N 1.45781 * 107.77068 * 308.69824 * 10 9 8 12 12 C 1.47771 * 116.98913 * 183.34565 * 11 10 9 13 13 C 1.55147 * 104.19270 * 198.68198 * 12 11 10 14 14 H 1.09002 * 110.43099 * 142.28548 * 13 12 11 15 15 O 1.42893 * 110.34709 * 264.50401 * 13 12 11 16 16 C 1.42898 * 114.00268 * 265.52206 * 15 13 12 17 17 C 1.50704 * 109.47488 * 179.97438 * 16 15 13 18 18 H 1.08003 * 119.99587 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00266 * 179.97438 * 17 16 15 20 20 N 1.31506 * 119.99919 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99838 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47168 * 89.99797 * 21 19 17 23 23 H 1.48499 * 109.46991 * 209.99628 * 21 19 17 24 24 H 1.48503 * 109.47370 * 330.00147 * 21 19 17 25 25 C 1.54945 * 104.94329 * 23.37517 * 13 12 11 26 26 C 1.48792 * 109.49594 * 66.16931 * 11 10 9 27 27 H 1.09003 * 110.51461 * 49.42583 * 26 11 10 28 28 C 1.47687 * 120.22857 * 179.97438 * 8 6 5 29 29 H 1.09000 * 109.46981 * 299.99684 * 1 2 3 30 30 H 1.08997 * 109.47153 * 60.00069 * 1 2 3 31 31 H 1.09000 * 109.47148 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47445 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47360 * 300.00230 * 3 2 1 34 34 H 1.09004 * 109.47304 * 59.99942 * 3 2 1 35 35 H 1.09000 * 109.47094 * 299.99976 * 4 2 1 36 36 H 1.08997 * 109.47521 * 59.99757 * 4 2 1 37 37 H 1.08997 * 109.46854 * 179.97438 * 4 2 1 38 38 H 1.08995 * 109.32065 * 106.68510 * 9 8 6 39 39 H 1.09001 * 109.34808 * 346.92670 * 9 8 6 40 40 H 1.09000 * 109.80060 * 189.13099 * 10 9 8 41 41 H 1.09002 * 109.80427 * 68.26128 * 10 9 8 42 42 H 1.09001 * 110.83751 * 79.69467 * 12 11 10 43 43 H 1.09003 * 109.91595 * 317.21227 * 12 11 10 44 44 H 1.09004 * 109.47199 * 299.99837 * 16 15 13 45 45 H 1.09000 * 109.47265 * 59.99731 * 16 15 13 46 46 H 0.97006 * 120.00070 * 180.02562 * 20 19 17 47 47 H 1.09003 * 110.47216 * 243.68632 * 25 13 12 48 48 H 1.08997 * 110.47346 * 121.07423 * 25 13 12 49 49 H 1.09002 * 110.01420 * 10.73671 * 28 8 6 50 50 H 1.09003 * 110.01185 * 249.40298 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6523 -1.9723 1.3382 7 8 0.9516 -2.5097 0.5034 8 7 2.0681 -2.6657 2.4165 9 6 2.9183 -2.0227 3.4272 10 6 4.1006 -2.9412 3.7795 11 7 3.5611 -4.2559 4.1046 12 6 4.5240 -5.2845 4.5502 13 6 3.7704 -6.6251 4.3456 14 1 4.4551 -7.3965 3.9929 15 8 3.1464 -7.0352 5.5639 16 6 3.9314 -7.9399 6.3433 17 6 3.1809 -8.3034 7.5986 18 1 2.2021 -7.8856 7.7826 19 6 3.7434 -9.1700 8.5116 20 7 4.9345 -9.6799 8.2868 21 14 2.8127 -9.6210 10.0672 22 1 1.9783 -10.8230 9.8139 23 1 3.7799 -9.9103 11.1563 24 1 1.9401 -8.4882 10.4680 25 6 2.6998 -6.3212 3.2676 26 6 2.9517 -4.8573 2.8877 27 1 3.6404 -4.7956 2.0452 28 6 1.6738 -4.0785 2.5894 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 -1.7488 -1.2494 36 1 1.6766 -0.2074 -2.1393 37 1 3.1300 -0.7207 -1.2495 38 1 2.3296 -1.8300 4.3240 39 1 3.2974 -1.0797 3.0332 40 1 4.6370 -2.5394 4.6392 41 1 4.7746 -3.0194 2.9264 42 1 4.7815 -5.1456 5.6002 43 1 5.4191 -5.2491 3.9292 44 1 4.1289 -8.8417 5.7637 45 1 4.8757 -7.4651 6.6095 46 1 5.3301 -10.2899 8.9289 47 1 1.6982 -6.4411 3.6806 48 1 2.8362 -6.9688 2.4016 49 1 1.2141 -4.4521 1.6744 50 1 0.9766 -4.1720 3.4220 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205611166.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:14 Heat of formation + Delta-G solvation = -133.282665 kcal Electronic energy + Delta-G solvation = -28939.245151 eV Core-core repulsion = 24966.040942 eV Total energy + Delta-G solvation = -3973.204210 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.03710 -40.84691 -38.75864 -37.79208 -36.24093 -34.96085 -34.68580 -33.53141 -30.80480 -29.52553 -28.83829 -28.34250 -28.26572 -26.07803 -24.64430 -24.00467 -23.04969 -21.85725 -21.21576 -20.26801 -18.89659 -18.63025 -17.77781 -17.59212 -17.26689 -16.90142 -16.62752 -16.26001 -16.07412 -15.84513 -15.49459 -15.23805 -15.04325 -14.89400 -14.66305 -14.37807 -13.91407 -13.63767 -13.42383 -13.32804 -13.20493 -13.05476 -12.96516 -12.85069 -12.84362 -12.65418 -12.52489 -12.45545 -12.41575 -12.25591 -12.20866 -12.07872 -11.90812 -11.70127 -11.37744 -11.23761 -11.06491 -10.85421 -10.19629 -9.95290 -9.37165 -8.30766 -6.42167 1.06262 1.40887 1.43174 1.55328 1.71425 2.35650 2.71911 2.87110 3.03137 3.14798 3.55151 3.59176 3.77297 3.82292 3.84231 3.97094 4.05445 4.07687 4.16940 4.26561 4.29382 4.43995 4.50486 4.57539 4.63716 4.65086 4.66801 4.72215 4.78747 4.79468 4.83702 4.87465 4.88279 4.90344 4.95435 4.97629 5.11722 5.17458 5.24618 5.29463 5.30348 5.38338 5.45455 5.56704 5.73600 6.00173 6.11112 6.29159 6.58044 6.87781 7.22762 7.29817 8.81206 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.031418 B = 0.002188 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.984814 B =12795.692769 C =12827.944485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.123 3.877 3 C -0.135 4.135 4 C -0.179 4.179 5 O -0.365 6.365 6 C 0.650 3.350 7 O -0.592 6.592 8 N -0.597 5.597 9 C 0.124 3.876 10 C 0.044 3.956 11 N -0.533 5.533 12 C 0.035 3.965 13 C 0.074 3.926 14 H 0.062 0.938 15 O -0.391 6.391 16 C 0.211 3.789 17 C -0.545 4.545 18 H 0.060 0.940 19 C 0.006 3.994 20 N -0.929 5.929 21 Si 0.980 3.020 22 H -0.268 1.268 23 H -0.275 1.275 24 H -0.266 1.266 25 C -0.105 4.105 26 C 0.059 3.941 27 H 0.062 0.938 28 C 0.151 3.849 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.043 0.957 42 H 0.068 0.932 43 H 0.059 0.941 44 H -0.014 1.014 45 H -0.013 1.013 46 H 0.270 0.730 47 H 0.080 0.920 48 H 0.099 0.901 49 H 0.098 0.902 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.293 22.154 -18.219 28.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.087 3.913 3 C -0.192 4.192 4 C -0.236 4.236 5 O -0.279 6.279 6 C 0.405 3.595 7 O -0.483 6.483 8 N -0.337 5.337 9 C 0.001 3.999 10 C -0.084 4.084 11 N -0.258 5.258 12 C -0.093 4.093 13 C 0.015 3.985 14 H 0.080 0.920 15 O -0.310 6.310 16 C 0.136 3.864 17 C -0.583 4.583 18 H 0.078 0.922 19 C -0.192 4.192 20 N -0.569 5.569 21 Si 0.803 3.197 22 H -0.194 1.194 23 H -0.200 1.200 24 H -0.190 1.190 25 C -0.143 4.143 26 C -0.050 4.050 27 H 0.080 0.920 28 C 0.029 3.971 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.120 0.880 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.127 0.873 40 H 0.120 0.880 41 H 0.062 0.938 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.004 0.996 45 H 0.005 0.995 46 H 0.079 0.921 47 H 0.098 0.902 48 H 0.117 0.883 49 H 0.116 0.884 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.892 22.165 -17.972 28.800 hybrid contribution 0.797 -0.891 0.224 1.216 sum -3.095 21.274 -17.749 27.878 Atomic orbital electron populations 1.22463 0.94064 1.03573 1.03532 1.22431 0.94565 0.92771 0.81508 1.21876 1.02430 0.90524 1.04328 1.22460 1.01535 1.02165 0.97414 1.86301 1.71463 1.22788 1.47381 1.18113 0.78646 0.81042 0.81703 1.90878 1.42543 1.70977 1.43941 1.47271 1.52612 1.12321 1.21541 1.21888 0.90996 0.95648 0.91344 1.22485 0.95957 0.88976 1.01017 1.63906 1.31108 1.02329 1.28470 1.23312 0.93677 0.91436 1.00838 1.23156 0.94707 0.94483 0.86172 0.92003 1.87924 1.45229 1.64795 1.33094 1.19838 0.90479 0.86364 0.89738 1.21381 1.04220 1.27902 1.04814 0.92218 1.25921 0.96004 0.95167 1.02123 1.70059 1.16895 1.31918 1.38003 0.85222 0.78178 0.78849 0.77409 1.19351 1.19965 1.19013 1.22248 1.00045 0.94629 0.97404 1.22718 0.96425 0.93700 0.92137 0.91976 1.21647 0.95634 0.76952 1.02819 0.92070 0.89075 0.92129 0.91169 0.87997 0.91196 0.92112 0.89097 0.92064 0.90492 0.87310 0.88006 0.93846 0.91313 0.92281 0.99637 0.99529 0.92109 0.90150 0.88273 0.88375 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.98 8.37 71.98 0.60 -2.38 16 2 C 0.12 2.03 1.13 -10.79 -0.01 2.02 16 3 C -0.13 -1.34 8.85 71.98 0.64 -0.70 16 4 C -0.18 -2.92 8.37 71.98 0.60 -2.32 16 5 O -0.36 -7.71 8.52 -55.45 -0.47 -8.18 16 6 C 0.65 16.29 7.73 129.79 1.00 17.30 16 7 O -0.59 -17.26 11.30 19.79 0.22 -17.04 16 8 N -0.60 -14.07 3.04 -947.29 -2.88 -16.94 16 9 C 0.12 2.42 6.55 86.58 0.57 2.99 16 10 C 0.04 0.93 6.03 86.79 0.52 1.45 16 11 N -0.53 -14.78 4.85 -860.81 -4.18 -18.96 16 12 C 0.04 1.12 6.49 86.87 0.56 1.68 16 13 C 0.07 2.68 3.59 32.00 0.11 2.80 16 14 H 0.06 2.22 7.81 -2.39 -0.02 2.20 16 15 O -0.39 -18.89 9.96 -148.98 -1.48 -20.37 16 16 C 0.21 11.71 5.53 71.24 0.39 12.11 16 17 C -0.55 -32.48 9.43 25.60 0.24 -32.24 16 18 H 0.06 3.55 7.81 -2.91 -0.02 3.52 16 19 C 0.01 0.36 5.46 84.66 0.46 0.83 16 20 N -0.93 -55.61 13.29 21.45 0.28 -55.33 16 21 Si 0.98 44.52 29.54 68.60 2.03 46.54 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 25 C -0.10 -3.01 6.45 31.36 0.20 -2.81 16 26 C 0.06 1.51 2.67 44.52 0.12 1.62 16 27 H 0.06 1.50 7.96 -2.39 -0.02 1.48 16 28 C 0.15 3.72 6.05 86.02 0.52 4.24 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 1.38 5.88 -2.39 -0.01 1.36 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 34 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.06 1.36 5.88 -2.39 -0.01 1.35 16 36 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.11 1.76 6.96 -2.39 -0.02 1.75 16 40 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.04 0.87 7.97 -2.39 -0.02 0.85 16 42 H 0.07 2.51 8.09 -2.39 -0.02 2.49 16 43 H 0.06 1.61 8.13 -2.39 -0.02 1.59 16 44 H -0.01 -0.82 8.10 -2.39 -0.02 -0.84 16 45 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 46 H 0.27 14.99 8.31 -92.70 -0.77 14.22 16 47 H 0.08 2.50 7.83 -2.39 -0.02 2.48 16 48 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 49 H 0.10 2.42 7.06 -2.39 -0.02 2.41 16 50 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -70.16 390.02 0.97 -69.19 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.90 Total: 14.50 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: 6.54 Total: 6.58 kcal Atomic # 7 Polarization: -84.46 SS G_CDS: -6.77 Total: -91.23 kcal Atomic # 8 Polarization: -43.86 SS G_CDS: -1.73 Total: -45.59 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -70.16 0.97 -69.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205611166.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.091 kcal (2) G-P(sol) polarization free energy of solvation -70.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds