Wall clock time and date at job start Tue Mar 31 2020 14:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47212 * 2 1 4 4 C 1.52998 * 109.47275 * 240.00151 * 2 1 3 5 5 O 1.45204 * 109.47073 * 119.99876 * 2 1 3 6 6 C 1.34645 * 116.99834 * 60.00153 * 5 2 1 7 7 O 1.21509 * 119.99730 * 0.02562 * 6 5 2 8 8 N 1.34766 * 119.99962 * 180.02562 * 6 5 2 9 9 C 1.47239 * 121.71980 * 359.97438 * 8 6 5 10 10 C 1.53095 * 109.39766 * 131.48755 * 9 8 6 11 11 N 1.47447 * 109.78482 * 48.44681 * 10 9 8 12 12 C 1.48076 * 109.71592 * 49.00079 * 11 10 9 13 13 C 1.54083 * 106.83162 * 269.95454 * 12 11 10 14 14 H 1.09001 * 110.52622 * 119.49425 * 13 12 11 15 15 O 1.42899 * 110.42013 * 241.92047 * 13 12 11 16 16 C 1.42905 * 113.99778 * 265.11008 * 15 13 12 17 17 C 1.52999 * 109.46728 * 179.97438 * 16 15 13 18 18 C 1.50706 * 109.46953 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99816 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00344 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99769 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00300 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46819 * 59.99744 * 22 20 18 24 24 H 1.48494 * 109.47285 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47196 * 300.00241 * 22 20 18 26 26 C 1.48377 * 121.71842 * 179.97438 * 8 6 5 27 27 H 1.09000 * 114.47278 * 5.46371 * 26 8 6 28 28 C 1.48804 * 108.53072 * 294.47097 * 11 10 9 29 29 H 1.08998 * 109.47553 * 300.00014 * 1 2 3 30 30 H 1.08998 * 109.47115 * 60.00264 * 1 2 3 31 31 H 1.08999 * 109.47337 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47227 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47382 * 299.99837 * 3 2 1 34 34 H 1.09004 * 109.46674 * 59.99948 * 3 2 1 35 35 H 1.09000 * 109.47269 * 299.99830 * 4 2 1 36 36 H 1.08998 * 109.47388 * 59.99752 * 4 2 1 37 37 H 1.09005 * 109.47143 * 180.02562 * 4 2 1 38 38 H 1.09002 * 109.47927 * 11.50790 * 9 8 6 39 39 H 1.09001 * 109.49794 * 251.47509 * 9 8 6 40 40 H 1.09008 * 109.41590 * 288.34926 * 10 9 8 41 41 H 1.08997 * 109.36603 * 168.51497 * 10 9 8 42 42 H 1.08996 * 109.98651 * 150.60705 * 12 11 10 43 43 H 1.09005 * 109.98351 * 29.29584 * 12 11 10 44 44 H 1.09000 * 109.47187 * 300.00233 * 16 15 13 45 45 H 1.09001 * 109.46558 * 60.00281 * 16 15 13 46 46 H 1.09000 * 109.47486 * 300.00062 * 17 16 15 47 47 H 1.09001 * 109.47362 * 60.00784 * 17 16 15 48 48 H 0.97000 * 120.00540 * 180.02562 * 21 20 18 49 49 H 1.09000 * 110.97755 * 316.40607 * 28 11 10 50 50 H 1.08997 * 110.97930 * 192.62390 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9724 1.3384 7 8 0.9516 -2.5097 0.5035 8 7 2.0671 -2.6654 2.4171 9 6 2.9171 -2.0522 3.4512 10 6 2.3322 -2.3524 4.8339 11 7 2.0201 -3.7894 4.9425 12 6 3.1839 -4.5885 4.4957 13 6 3.0109 -4.8209 2.9824 14 1 3.8476 -4.3910 2.4316 15 8 2.8958 -6.2175 2.7024 16 6 4.1303 -6.8422 2.3446 17 6 3.8889 -8.3277 2.0690 18 6 5.1908 -8.9867 1.6923 19 1 6.0995 -8.4043 1.6537 20 6 5.2219 -10.3331 1.3968 21 7 4.1155 -11.0424 1.4442 22 14 6.8355 -11.1498 0.9291 23 1 7.8052 -11.0047 2.0446 24 1 6.6014 -12.5915 0.6617 25 1 7.3830 -10.5022 -0.2899 26 6 1.6909 -4.0857 2.6239 27 1 1.1413 -4.5325 1.7953 28 6 0.9314 -4.1109 3.9805 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1299 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2490 38 1 2.9544 -0.9736 3.2985 39 1 3.9243 -2.4637 3.3854 40 1 1.4206 -1.7717 4.9756 41 1 3.0580 -2.0802 5.6002 42 1 3.2029 -5.5441 5.0197 43 1 4.1070 -4.0406 4.6854 44 1 4.5321 -6.3668 1.4498 45 1 4.8419 -6.7359 3.1634 46 1 3.4873 -8.8028 2.9640 47 1 3.1771 -8.4344 1.2504 48 1 4.1373 -11.9897 1.2367 49 1 0.1515 -3.3497 4.0052 50 1 0.5161 -5.0993 4.1772 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205622334.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:06 Heat of formation + Delta-G solvation = -105.342975 kcal Electronic energy + Delta-G solvation = -29487.136330 eV Core-core repulsion = 25515.143676 eV Total energy + Delta-G solvation = -3971.992654 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.49769 -40.27032 -37.27341 -36.83003 -34.71093 -33.62845 -33.26902 -31.77621 -29.91430 -28.47381 -27.69258 -27.60916 -27.17370 -24.62948 -23.86375 -22.82668 -21.02814 -20.93038 -20.42317 -19.28702 -18.20929 -17.04139 -16.69476 -16.42148 -16.09615 -15.74900 -15.17022 -14.93228 -14.74491 -14.66055 -14.54470 -14.45835 -14.11624 -13.70284 -13.60260 -12.88837 -12.78917 -12.70432 -12.46390 -12.30692 -12.15973 -12.12557 -11.96039 -11.81520 -11.69707 -11.52936 -11.46367 -11.32916 -11.14981 -11.01146 -10.74940 -10.58628 -10.50351 -10.40857 -10.16234 -9.64813 -9.42511 -9.24084 -9.13868 -8.38883 -8.26306 -6.04571 -4.08663 1.82783 2.67355 3.31131 3.35551 3.37392 3.49153 3.80419 4.08821 4.42982 4.44820 4.49062 4.52706 4.59238 4.63844 4.75847 4.77705 4.85860 5.04454 5.16702 5.18916 5.26970 5.29375 5.31434 5.39687 5.41334 5.46327 5.49766 5.54895 5.59237 5.60898 5.70297 5.70672 5.78442 6.03989 6.04668 6.08344 6.15964 6.20412 6.22207 6.28070 6.52860 6.74344 6.82704 7.17870 7.47678 7.75704 7.76734 8.05107 8.16822 8.32685 8.97402 9.55124 11.06983 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.014858 B = 0.002816 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.098104 B = 9939.809498 C =11020.308979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.185 4.185 5 O -0.364 6.364 6 C 0.657 3.343 7 O -0.562 6.562 8 N -0.596 5.596 9 C 0.075 3.925 10 C 0.023 3.977 11 N -0.494 5.494 12 C 0.007 3.993 13 C 0.052 3.948 14 H 0.069 0.931 15 O -0.373 6.373 16 C 0.070 3.930 17 C 0.027 3.973 18 C -0.526 4.526 19 H 0.055 0.945 20 C 0.060 3.940 21 N -0.890 5.890 22 Si 0.897 3.103 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.276 1.276 26 C 0.128 3.872 27 H 0.137 0.863 28 C 0.025 3.975 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.100 0.900 43 H 0.075 0.925 44 H 0.035 0.965 45 H 0.037 0.963 46 H 0.026 0.974 47 H 0.025 0.975 48 H 0.263 0.737 49 H 0.083 0.917 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.373 26.437 2.691 27.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.242 4.242 5 O -0.279 6.279 6 C 0.413 3.587 7 O -0.451 6.451 8 N -0.338 5.338 9 C -0.049 4.049 10 C -0.107 4.107 11 N -0.215 5.215 12 C -0.121 4.121 13 C -0.010 4.010 14 H 0.087 0.913 15 O -0.291 6.291 16 C -0.006 4.006 17 C -0.011 4.011 18 C -0.564 4.564 19 H 0.073 0.927 20 C -0.142 4.142 21 N -0.529 5.529 22 Si 0.724 3.276 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.202 1.202 26 C 0.025 3.975 27 H 0.154 0.846 28 C -0.104 4.104 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.114 0.886 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.110 0.890 42 H 0.118 0.882 43 H 0.094 0.906 44 H 0.053 0.947 45 H 0.055 0.945 46 H 0.044 0.956 47 H 0.043 0.957 48 H 0.073 0.927 49 H 0.102 0.898 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.985 25.937 2.951 26.782 hybrid contribution 1.502 -0.075 -1.249 1.955 sum -4.483 25.863 1.702 26.304 Atomic orbital electron populations 1.22509 0.93979 1.05154 1.02353 1.22072 0.94381 0.91452 0.82213 1.21852 1.02241 0.92539 1.03039 1.22523 1.01618 1.03671 0.96364 1.86279 1.71608 1.23664 1.46388 1.17865 0.78811 0.80454 0.81614 1.90918 1.41138 1.70279 1.42727 1.47475 1.53474 1.11718 1.21100 1.22425 0.94275 0.99800 0.88403 1.22908 1.02025 0.90835 0.94945 1.66021 1.05853 1.03679 1.45974 1.23716 0.93644 1.00129 0.94640 1.23689 0.96665 0.85178 0.95435 0.91300 1.87975 1.34156 1.18141 1.88816 1.22990 0.83758 0.97012 0.96828 1.19063 0.97608 0.86396 0.97987 1.20992 0.93882 0.94065 1.47462 0.92660 1.24986 0.96520 0.97328 0.95371 1.69966 1.26720 1.07673 1.48506 0.86588 0.83633 0.78348 0.79024 1.20152 1.21143 1.20182 1.23463 0.96079 0.77370 1.00557 0.84577 1.23907 0.94397 1.03588 0.88476 0.92281 0.91158 0.89304 0.91497 0.90139 0.91559 0.89238 0.91128 0.92167 0.88646 0.90986 0.90057 0.88967 0.88160 0.90614 0.94706 0.94501 0.95604 0.95695 0.92737 0.89821 0.87677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.72 8.37 37.16 0.31 -1.41 16 2 C 0.14 1.32 1.13 -90.62 -0.10 1.22 16 3 C -0.14 -0.95 8.85 37.16 0.33 -0.62 16 4 C -0.18 -1.89 8.37 37.16 0.31 -1.58 16 5 O -0.36 -4.27 8.66 -40.34 -0.35 -4.62 16 6 C 0.66 8.99 7.79 54.05 0.42 9.42 16 7 O -0.56 -9.00 11.60 -19.28 -0.22 -9.22 16 8 N -0.60 -7.42 2.70 -166.92 -0.45 -7.87 16 9 C 0.08 0.72 5.76 -3.59 -0.02 0.70 16 10 C 0.02 0.20 5.91 -3.47 -0.02 0.18 16 11 N -0.49 -5.73 5.97 -229.10 -1.37 -7.10 16 12 C 0.01 0.09 6.04 -2.61 -0.02 0.08 16 13 C 0.05 0.78 2.49 -24.95 -0.06 0.71 16 14 H 0.07 1.04 7.17 -51.93 -0.37 0.67 16 15 O -0.37 -7.27 9.99 -35.23 -0.35 -7.62 16 16 C 0.07 1.50 5.71 37.16 0.21 1.71 16 17 C 0.03 0.71 5.34 -27.88 -0.15 0.56 16 18 C -0.53 -14.94 9.11 -34.44 -0.31 -15.25 16 19 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -26.92 13.29 55.43 0.74 -26.19 16 22 Si 0.90 21.59 29.54 -169.99 -5.02 16.56 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 26 C 0.13 1.78 4.15 -64.35 -0.27 1.51 16 27 H 0.14 2.15 7.48 -51.93 -0.39 1.76 16 28 C 0.03 0.31 6.53 -1.44 -0.01 0.30 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 1.07 5.88 -51.93 -0.31 0.77 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.09 1.18 5.88 -51.93 -0.31 0.87 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.10 0.81 7.09 -51.93 -0.37 0.44 16 39 H 0.07 0.69 6.25 -51.93 -0.32 0.37 16 40 H 0.08 0.69 7.91 -51.92 -0.41 0.28 16 41 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.10 1.45 7.97 -51.93 -0.41 1.04 16 43 H 0.08 0.83 7.02 -51.93 -0.36 0.47 16 44 H 0.03 0.74 8.11 -51.93 -0.42 0.31 16 45 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 49 H 0.08 0.93 7.84 -51.93 -0.41 0.52 16 50 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 386.43 15.07 5.82 5.82 Total: -1.00 -31.98 386.43 -9.37 -41.36 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -8.70 Total: -0.28 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 0.53 Total: -0.85 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: -1.08 Total: -41.15 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.92 Total: -21.47 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.98 -9.37 -41.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205622334.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.986 kcal (2) G-P(sol) polarization free energy of solvation -31.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds