Wall clock time and date at job start Tue Mar 31 2020 14:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47212 * 2 1 4 4 C 1.52998 * 109.47275 * 240.00151 * 2 1 3 5 5 O 1.45204 * 109.47073 * 119.99876 * 2 1 3 6 6 C 1.34645 * 116.99834 * 60.00153 * 5 2 1 7 7 O 1.21509 * 119.99730 * 0.02562 * 6 5 2 8 8 N 1.34766 * 119.99962 * 180.02562 * 6 5 2 9 9 C 1.47239 * 121.71980 * 359.97438 * 8 6 5 10 10 C 1.53095 * 109.39766 * 131.48755 * 9 8 6 11 11 N 1.47447 * 109.78482 * 48.44681 * 10 9 8 12 12 C 1.48076 * 109.71592 * 49.00079 * 11 10 9 13 13 C 1.54083 * 106.83162 * 269.95454 * 12 11 10 14 14 H 1.09001 * 110.52622 * 119.49425 * 13 12 11 15 15 O 1.42899 * 110.42013 * 241.92047 * 13 12 11 16 16 C 1.42905 * 113.99778 * 265.11008 * 15 13 12 17 17 C 1.52999 * 109.46728 * 179.97438 * 16 15 13 18 18 C 1.50706 * 109.46953 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99816 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00344 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99769 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00300 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46819 * 59.99744 * 22 20 18 24 24 H 1.48494 * 109.47285 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47196 * 300.00241 * 22 20 18 26 26 C 1.48377 * 121.71842 * 179.97438 * 8 6 5 27 27 H 1.09000 * 114.47278 * 5.46371 * 26 8 6 28 28 C 1.48804 * 108.53072 * 294.47097 * 11 10 9 29 29 H 1.08998 * 109.47553 * 300.00014 * 1 2 3 30 30 H 1.08998 * 109.47115 * 60.00264 * 1 2 3 31 31 H 1.08999 * 109.47337 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47227 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47382 * 299.99837 * 3 2 1 34 34 H 1.09004 * 109.46674 * 59.99948 * 3 2 1 35 35 H 1.09000 * 109.47269 * 299.99830 * 4 2 1 36 36 H 1.08998 * 109.47388 * 59.99752 * 4 2 1 37 37 H 1.09005 * 109.47143 * 180.02562 * 4 2 1 38 38 H 1.09002 * 109.47927 * 11.50790 * 9 8 6 39 39 H 1.09001 * 109.49794 * 251.47509 * 9 8 6 40 40 H 1.09008 * 109.41590 * 288.34926 * 10 9 8 41 41 H 1.08997 * 109.36603 * 168.51497 * 10 9 8 42 42 H 1.08996 * 109.98651 * 150.60705 * 12 11 10 43 43 H 1.09005 * 109.98351 * 29.29584 * 12 11 10 44 44 H 1.09000 * 109.47187 * 300.00233 * 16 15 13 45 45 H 1.09001 * 109.46558 * 60.00281 * 16 15 13 46 46 H 1.09000 * 109.47486 * 300.00062 * 17 16 15 47 47 H 1.09001 * 109.47362 * 60.00784 * 17 16 15 48 48 H 0.97000 * 120.00540 * 180.02562 * 21 20 18 49 49 H 1.09000 * 110.97755 * 316.40607 * 28 11 10 50 50 H 1.08997 * 110.97930 * 192.62390 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9724 1.3384 7 8 0.9516 -2.5097 0.5035 8 7 2.0671 -2.6654 2.4171 9 6 2.9171 -2.0522 3.4512 10 6 2.3322 -2.3524 4.8339 11 7 2.0201 -3.7894 4.9425 12 6 3.1839 -4.5885 4.4957 13 6 3.0109 -4.8209 2.9824 14 1 3.8476 -4.3910 2.4316 15 8 2.8958 -6.2175 2.7024 16 6 4.1303 -6.8422 2.3446 17 6 3.8889 -8.3277 2.0690 18 6 5.1908 -8.9867 1.6923 19 1 6.0995 -8.4043 1.6537 20 6 5.2219 -10.3331 1.3968 21 7 4.1155 -11.0424 1.4442 22 14 6.8355 -11.1498 0.9291 23 1 7.8052 -11.0047 2.0446 24 1 6.6014 -12.5915 0.6617 25 1 7.3830 -10.5022 -0.2899 26 6 1.6909 -4.0857 2.6239 27 1 1.1413 -4.5325 1.7953 28 6 0.9314 -4.1109 3.9805 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1299 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2490 38 1 2.9544 -0.9736 3.2985 39 1 3.9243 -2.4637 3.3854 40 1 1.4206 -1.7717 4.9756 41 1 3.0580 -2.0802 5.6002 42 1 3.2029 -5.5441 5.0197 43 1 4.1070 -4.0406 4.6854 44 1 4.5321 -6.3668 1.4498 45 1 4.8419 -6.7359 3.1634 46 1 3.4873 -8.8028 2.9640 47 1 3.1771 -8.4344 1.2504 48 1 4.1373 -11.9897 1.2367 49 1 0.1515 -3.3497 4.0052 50 1 0.5161 -5.0993 4.1772 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205622334.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:05 Heat of formation + Delta-G solvation = -127.369323 kcal Electronic energy + Delta-G solvation = -29488.091464 eV Core-core repulsion = 25515.143676 eV Total energy + Delta-G solvation = -3972.947788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.50273 -41.24750 -38.62051 -37.94234 -35.70929 -35.34049 -34.48926 -32.95325 -31.70441 -29.65455 -28.39469 -28.30537 -28.20614 -26.63446 -24.76618 -23.81322 -22.94554 -21.99334 -21.44439 -20.23868 -19.24354 -18.66698 -17.95107 -17.56784 -17.18627 -16.96966 -16.59273 -16.37883 -16.01976 -15.87250 -15.62282 -15.35957 -15.13251 -14.98770 -14.47911 -14.29371 -14.11228 -13.70523 -13.48697 -13.29572 -13.16107 -13.07909 -12.93032 -12.88598 -12.86076 -12.76390 -12.61672 -12.46920 -12.34713 -12.34033 -12.20369 -12.10222 -11.97000 -11.51033 -11.43334 -11.40647 -11.16730 -10.74772 -10.52556 -10.50809 -9.28455 -8.24854 -6.38441 0.86096 1.39899 1.43967 1.52001 1.63039 2.35501 2.58932 2.83650 2.85625 3.09015 3.45003 3.60704 3.67468 3.72796 3.77466 3.92476 3.95028 3.96088 4.06001 4.23579 4.32913 4.38992 4.41065 4.47725 4.55207 4.57743 4.59126 4.64217 4.73569 4.74103 4.78000 4.82365 4.86815 4.88264 4.93281 4.99108 5.07570 5.17859 5.25778 5.31979 5.35597 5.39674 5.54929 5.57933 5.70764 5.85767 6.08725 6.18791 6.33260 6.77114 7.15394 7.31442 8.88023 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.014858 B = 0.002816 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.098104 B = 9939.809498 C =11020.308979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.125 3.875 3 C -0.133 4.133 4 C -0.182 4.182 5 O -0.360 6.360 6 C 0.653 3.347 7 O -0.593 6.593 8 N -0.594 5.594 9 C 0.073 3.927 10 C 0.025 3.975 11 N -0.495 5.495 12 C 0.016 3.984 13 C 0.048 3.952 14 H 0.070 0.930 15 O -0.394 6.394 16 C 0.089 3.911 17 C 0.030 3.970 18 C -0.547 4.547 19 H 0.068 0.932 20 C 0.001 3.999 21 N -0.932 5.932 22 Si 0.974 3.026 23 H -0.262 1.262 24 H -0.282 1.282 25 H -0.266 1.266 26 C 0.127 3.873 27 H 0.108 0.892 28 C 0.033 3.967 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.113 0.887 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.119 0.881 42 H 0.082 0.918 43 H 0.102 0.898 44 H 0.038 0.962 45 H 0.053 0.947 46 H -0.002 1.002 47 H -0.010 1.010 48 H 0.266 0.734 49 H 0.096 0.904 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.561 29.151 3.422 29.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.088 3.912 3 C -0.190 4.190 4 C -0.240 4.240 5 O -0.275 6.275 6 C 0.408 3.592 7 O -0.484 6.484 8 N -0.336 5.336 9 C -0.049 4.049 10 C -0.103 4.103 11 N -0.217 5.217 12 C -0.112 4.112 13 C -0.012 4.012 14 H 0.088 0.912 15 O -0.313 6.313 16 C 0.013 3.987 17 C -0.008 4.008 18 C -0.585 4.585 19 H 0.086 0.914 20 C -0.198 4.198 21 N -0.571 5.571 22 Si 0.797 3.203 23 H -0.186 1.186 24 H -0.208 1.208 25 H -0.190 1.190 26 C 0.023 3.977 27 H 0.126 0.874 28 C -0.096 4.096 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.120 0.880 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.078 0.922 38 H 0.131 0.869 39 H 0.094 0.906 40 H 0.110 0.890 41 H 0.137 0.863 42 H 0.101 0.899 43 H 0.121 0.879 44 H 0.056 0.944 45 H 0.071 0.929 46 H 0.016 0.984 47 H 0.008 0.992 48 H 0.075 0.925 49 H 0.115 0.885 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.162 28.700 3.706 29.236 hybrid contribution 0.847 -0.840 -1.504 1.919 sum -3.316 27.860 2.202 28.143 Atomic orbital electron populations 1.22456 0.93880 1.03453 1.03771 1.22444 0.94689 0.92817 0.81209 1.21868 1.02407 0.90138 1.04539 1.22490 1.01527 1.02027 0.97908 1.86292 1.71442 1.22425 1.47320 1.18052 0.78578 0.81062 0.81471 1.90915 1.42516 1.71066 1.43901 1.47500 1.53610 1.10948 1.21519 1.22646 0.93849 1.00657 0.87788 1.23038 1.03318 0.88876 0.95108 1.65993 1.05017 1.05382 1.45273 1.23598 0.95349 1.00104 0.92193 1.23932 0.97351 0.82569 0.97367 0.91171 1.87920 1.33279 1.20984 1.89102 1.22532 0.84694 0.93878 0.97576 1.18915 0.96419 0.90092 0.95337 1.21427 0.94696 0.94815 1.47533 0.91413 1.26045 1.00653 0.98091 0.94991 1.70118 1.29455 1.08131 1.49428 0.85373 0.78605 0.77049 0.79260 1.18640 1.20763 1.19048 1.23251 0.95622 0.78294 1.00569 0.87428 1.23824 0.94803 1.03537 0.87414 0.91492 0.89094 0.92481 0.91231 0.88002 0.90693 0.92686 0.88943 0.92186 0.86927 0.90560 0.89042 0.86308 0.89938 0.87947 0.94408 0.92852 0.98365 0.99162 0.92511 0.88525 0.88824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.20 8.37 71.98 0.60 -2.60 16 2 C 0.12 2.26 1.13 -10.80 -0.01 2.25 16 3 C -0.13 -1.42 8.85 71.98 0.64 -0.78 16 4 C -0.18 -3.66 8.37 71.98 0.60 -3.06 16 5 O -0.36 -8.04 8.66 -55.54 -0.48 -8.52 16 6 C 0.65 17.93 7.79 129.79 1.01 18.94 16 7 O -0.59 -19.98 11.60 19.81 0.23 -19.75 16 8 N -0.59 -14.47 2.70 -912.44 -2.46 -16.93 16 9 C 0.07 1.22 5.76 86.27 0.50 1.72 16 10 C 0.03 0.38 5.91 86.23 0.51 0.88 16 11 N -0.50 -10.61 5.97 -878.75 -5.24 -15.85 16 12 C 0.02 0.40 6.04 86.44 0.52 0.92 16 13 C 0.05 1.45 2.49 31.75 0.08 1.53 16 14 H 0.07 2.09 7.17 -2.39 -0.02 2.07 16 15 O -0.39 -15.95 9.99 -148.98 -1.49 -17.43 16 16 C 0.09 3.91 5.71 71.98 0.41 4.32 16 17 C 0.03 1.65 5.34 29.85 0.16 1.81 16 18 C -0.55 -31.54 9.11 25.60 0.23 -31.31 16 19 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 20 C 0.00 0.03 5.46 84.65 0.46 0.49 16 21 N -0.93 -57.88 13.29 21.45 0.28 -57.60 16 22 Si 0.97 44.20 29.54 68.60 2.03 46.23 16 23 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 26 C 0.13 3.60 4.15 46.28 0.19 3.79 16 27 H 0.11 3.68 7.48 -2.39 -0.02 3.66 16 28 C 0.03 0.80 6.53 86.79 0.57 1.37 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 1.42 5.88 -2.39 -0.01 1.41 16 32 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.05 1.51 5.88 -2.39 -0.01 1.50 16 36 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 37 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.11 1.54 7.09 -2.39 -0.02 1.53 16 39 H 0.08 1.24 6.25 -2.39 -0.01 1.23 16 40 H 0.09 1.23 7.91 -2.38 -0.02 1.21 16 41 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.08 2.34 7.97 -2.39 -0.02 2.33 16 43 H 0.10 1.95 7.02 -2.38 -0.02 1.93 16 44 H 0.04 1.62 8.11 -2.39 -0.02 1.60 16 45 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 47 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 48 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 49 H 0.10 2.06 7.84 -2.39 -0.02 2.04 16 50 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -72.44 386.43 0.24 -72.20 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.91 Total: 17.36 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 6.47 Total: 0.28 kcal Atomic # 7 Polarization: -82.96 SS G_CDS: -7.42 Total: -90.38 kcal Atomic # 8 Polarization: -43.96 SS G_CDS: -1.74 Total: -45.70 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -72.44 0.24 -72.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205622334.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.171 kcal (2) G-P(sol) polarization free energy of solvation -72.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds