Wall clock time and date at job start Tue Mar 31 2020 14:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47132 * 2 1 4 4 C 1.53004 * 109.47154 * 240.00066 * 2 1 3 5 5 O 1.45201 * 109.47101 * 120.00041 * 2 1 3 6 6 C 1.34640 * 116.99624 * 59.99862 * 5 2 1 7 7 O 1.21503 * 120.00607 * 359.97438 * 6 5 2 8 8 N 1.34786 * 119.99671 * 180.02562 * 6 5 2 9 9 C 1.47152 * 120.98030 * 359.97438 * 8 6 5 10 10 C 1.53292 * 108.38237 * 129.48937 * 9 8 6 11 11 O 1.42969 * 109.22472 * 52.30314 * 10 9 8 12 12 C 1.42964 * 114.16061 * 297.41754 * 11 10 9 13 13 H 1.08998 * 109.55729 * 302.63087 * 12 11 10 14 14 C 1.53006 * 109.50942 * 182.50140 * 12 11 10 15 15 N 1.46904 * 109.46673 * 65.25436 * 14 12 11 16 16 C 1.47477 * 110.99991 * 74.03226 * 15 14 12 17 17 C 1.53508 * 87.93423 * 138.69791 * 16 15 14 18 18 C 1.50699 * 114.34493 * 220.31034 * 17 16 15 19 19 H 1.08003 * 119.99638 * 93.92952 * 18 17 16 20 20 C 1.37876 * 120.00467 * 273.92580 * 18 17 16 21 21 N 1.31511 * 119.99854 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00127 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47230 * 89.99949 * 22 20 18 24 24 H 1.48501 * 109.47073 * 210.00304 * 22 20 18 25 25 H 1.48506 * 109.46905 * 329.99687 * 22 20 18 26 26 C 1.47486 * 110.99774 * 169.99845 * 15 14 12 27 27 C 1.47148 * 120.98187 * 180.02562 * 8 6 5 28 28 H 1.08994 * 109.47008 * 300.00330 * 1 2 3 29 29 H 1.09003 * 109.46871 * 60.00000 * 1 2 3 30 30 H 1.08996 * 109.47477 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46951 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47242 * 299.99773 * 3 2 1 33 33 H 1.09004 * 109.47328 * 59.99992 * 3 2 1 34 34 H 1.09006 * 109.46975 * 300.00246 * 4 2 1 35 35 H 1.08998 * 109.46839 * 60.00108 * 4 2 1 36 36 H 1.09003 * 109.47106 * 180.02562 * 4 2 1 37 37 H 1.09001 * 109.68017 * 249.21567 * 9 8 6 38 38 H 1.09001 * 109.68308 * 9.76372 * 9 8 6 39 39 H 1.08996 * 109.51174 * 172.22597 * 10 9 8 40 40 H 1.09000 * 109.51512 * 292.32989 * 10 9 8 41 41 H 1.08992 * 109.47046 * 185.25376 * 14 12 11 42 42 H 1.08997 * 109.47395 * 305.25916 * 14 12 11 43 43 H 1.09003 * 113.47569 * 253.46529 * 16 15 14 44 44 H 1.09003 * 113.47453 * 23.93149 * 16 15 14 45 45 H 1.09006 * 114.16568 * 87.62279 * 17 16 15 46 46 H 0.97004 * 120.00499 * 179.97438 * 21 20 18 47 47 H 1.09003 * 113.47482 * 336.06931 * 26 15 14 48 48 H 1.08995 * 113.47435 * 106.46688 * 26 15 14 49 49 H 1.08999 * 109.68271 * 110.78738 * 27 8 6 50 50 H 1.09000 * 109.68243 * 350.22940 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3383 7 8 0.9508 -2.5095 0.5040 8 7 2.0671 -2.6655 2.4172 9 6 2.9165 -2.0364 3.4409 10 6 2.2905 -2.2975 4.8156 11 8 2.0491 -3.6988 4.9644 12 6 1.1187 -4.2357 4.0211 13 1 0.1718 -3.7013 4.0979 14 6 0.8928 -5.7203 4.3145 15 7 0.2402 -5.8672 5.6223 16 6 -1.1807 -5.4787 5.5505 17 6 -1.4987 -6.6870 6.4424 18 6 -2.7465 -7.4363 6.0517 19 1 -2.6793 -8.2934 5.3980 20 6 -3.9739 -7.0276 6.5287 21 7 -4.0557 -5.9837 7.3243 22 14 -5.5205 -7.9568 6.0450 23 1 -5.7762 -9.0388 7.0293 24 1 -6.6741 -7.0219 6.0261 25 1 -5.3406 -8.5483 4.6947 26 6 -0.2082 -7.2559 5.8362 27 6 1.6851 -4.0740 2.6055 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7490 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1301 -0.7216 -1.2490 37 1 3.9165 -2.4688 3.4047 38 1 2.9736 -0.9628 3.2615 39 1 2.9727 -1.9607 5.5962 40 1 1.3488 -1.7546 4.8960 41 1 0.2572 -6.1509 3.5408 42 1 1.8518 -6.2383 4.3268 43 1 -1.3935 -4.5208 6.0251 44 1 -1.6019 -5.5561 4.5481 45 1 -1.4370 -6.4814 7.5111 46 1 -4.9193 -5.6959 7.6597 47 1 -0.3698 -7.8075 4.9101 48 1 0.4040 -7.8044 6.5520 49 1 2.5612 -4.7112 2.4853 50 1 0.9266 -4.3498 1.8728 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208092357.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:21 Heat of formation + Delta-G solvation = -83.269670 kcal Electronic energy + Delta-G solvation = -29111.734869 eV Core-core repulsion = 25140.699385 eV Total energy + Delta-G solvation = -3971.035484 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.10871 -39.60791 -38.57216 -37.10472 -35.06937 -34.00665 -33.13508 -32.14353 -29.28566 -27.84119 -27.69783 -27.62568 -25.74252 -24.80893 -23.72189 -23.16623 -21.52491 -20.68530 -19.50460 -18.60910 -18.16430 -16.98960 -16.67626 -16.46013 -16.37253 -15.53229 -15.35898 -14.99835 -14.77144 -14.66216 -14.47268 -14.23634 -13.86142 -13.77268 -13.61513 -13.18782 -12.83554 -12.47724 -12.46315 -12.22141 -12.17094 -12.02385 -11.88330 -11.75671 -11.67430 -11.56431 -11.40638 -11.11263 -10.96033 -10.81688 -10.61796 -10.51357 -10.32544 -10.15780 -10.03618 -9.70015 -9.20503 -8.92246 -8.71346 -8.42916 -7.94655 -6.04395 -4.08951 1.86466 2.65284 3.29624 3.36609 3.39285 3.53334 3.76187 4.39552 4.43236 4.47766 4.50482 4.62309 4.73726 4.87859 4.95989 5.04374 5.16997 5.18390 5.24423 5.25834 5.28699 5.36407 5.40056 5.48033 5.49829 5.57013 5.59232 5.63003 5.68957 5.69908 5.87956 5.99221 6.03774 6.08823 6.14287 6.18310 6.24320 6.36569 6.48521 6.70658 6.75108 7.13192 7.15448 7.17259 7.25928 7.74036 7.92652 8.09965 8.13794 8.38709 8.94439 9.56078 11.05158 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.015596 B = 0.002714 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.859564 B =10313.229716 C =11269.645389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.363 6.363 6 C 0.655 3.345 7 O -0.566 6.566 8 N -0.598 5.598 9 C 0.077 3.923 10 C 0.046 3.954 11 O -0.354 6.354 12 C 0.088 3.912 13 H 0.066 0.934 14 C 0.030 3.970 15 N -0.472 5.472 16 C 0.002 3.998 17 C 0.043 3.957 18 C -0.516 4.516 19 H 0.057 0.943 20 C 0.066 3.934 21 N -0.886 5.886 22 Si 0.891 3.109 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.274 1.274 26 C -0.006 4.006 27 C 0.099 3.901 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.051 0.949 45 H 0.064 0.936 46 H 0.261 0.739 47 H 0.054 0.946 48 H 0.063 0.937 49 H 0.080 0.920 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.251 13.831 -13.444 24.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.240 4.240 5 O -0.278 6.278 6 C 0.410 3.590 7 O -0.455 6.455 8 N -0.339 5.339 9 C -0.046 4.046 10 C -0.032 4.032 11 O -0.272 6.272 12 C 0.029 3.971 13 H 0.084 0.916 14 C -0.099 4.099 15 N -0.194 5.194 16 C -0.127 4.127 17 C 0.024 3.976 18 C -0.554 4.554 19 H 0.076 0.924 20 C -0.136 4.136 21 N -0.523 5.523 22 Si 0.718 3.282 23 H -0.205 1.205 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.135 4.135 27 C -0.023 4.023 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.116 0.884 39 H 0.124 0.876 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.082 0.918 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.081 0.919 49 H 0.098 0.902 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 15.471 14.083 -13.078 24.672 hybrid contribution -1.450 -0.461 -1.252 1.971 sum 14.020 13.623 -14.329 24.238 Atomic orbital electron populations 1.22525 0.93856 1.05256 1.02545 1.22085 0.94501 0.91475 0.82081 1.21856 1.02141 0.92525 1.03186 1.22513 1.01427 1.03590 0.96481 1.86274 1.71549 1.23553 1.46447 1.17908 0.78656 0.80527 0.81888 1.90899 1.41129 1.70404 1.43059 1.46953 1.53183 1.12343 1.21405 1.22487 0.94291 0.99520 0.88258 1.22944 1.00540 0.84045 0.95692 1.88118 1.63086 1.21253 1.54769 1.22476 0.92198 0.96141 0.86308 0.91586 1.22553 1.00713 0.92509 0.94146 1.68975 1.14378 1.11909 1.24184 1.24059 0.86337 1.02016 1.00310 1.20071 0.90536 0.90942 0.96062 1.21040 0.91047 1.13673 1.29683 0.92429 1.25020 0.99100 0.94922 0.94587 1.69970 1.24927 1.24778 1.32656 0.86622 0.82831 0.79720 0.78998 1.20549 1.21220 1.19872 1.24025 0.98996 0.90508 0.99946 1.22424 1.01954 0.79002 0.98889 0.92076 0.91116 0.89296 0.91526 0.90120 0.91424 0.89365 0.91126 0.92259 0.90399 0.88388 0.87552 0.92714 0.92782 0.90537 0.91954 0.93045 0.91801 0.92883 0.92821 0.91900 0.90171 0.87727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 8.37 37.16 0.31 -1.55 16 2 C 0.14 1.31 1.13 -90.62 -0.10 1.21 16 3 C -0.14 -0.95 8.85 37.15 0.33 -0.62 16 4 C -0.18 -1.71 8.37 37.16 0.31 -1.40 16 5 O -0.36 -4.27 8.58 -40.32 -0.35 -4.62 16 6 C 0.66 8.92 7.75 54.06 0.42 9.34 16 7 O -0.57 -8.84 11.35 -19.27 -0.22 -9.06 16 8 N -0.60 -7.55 3.02 -178.04 -0.54 -8.09 16 9 C 0.08 0.78 6.65 -3.54 -0.02 0.76 16 10 C 0.05 0.52 6.98 37.31 0.26 0.78 16 11 O -0.35 -5.38 10.34 -35.23 -0.36 -5.75 16 12 C 0.09 1.33 2.86 -26.56 -0.08 1.25 16 13 H 0.07 1.13 7.55 -51.93 -0.39 0.73 16 14 C 0.03 0.50 4.49 -3.82 -0.02 0.48 16 15 N -0.47 -9.61 6.37 -244.65 -1.56 -11.16 16 16 C 0.00 0.04 6.51 -7.56 -0.05 -0.01 16 17 C 0.04 1.08 3.76 -91.25 -0.34 0.74 16 18 C -0.52 -14.06 8.83 -34.44 -0.30 -14.36 16 19 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 20 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 21 N -0.89 -25.67 13.26 55.43 0.74 -24.93 16 22 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 26 C -0.01 -0.13 7.27 -7.55 -0.05 -0.18 16 27 C 0.10 1.29 5.93 -3.52 -0.02 1.27 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.09 1.14 5.88 -51.93 -0.31 0.84 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 1.05 5.88 -51.93 -0.31 0.74 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.10 0.86 7.01 -51.93 -0.36 0.50 16 39 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.87 7.56 -51.93 -0.39 0.48 16 42 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 44 H 0.05 1.18 7.66 -51.93 -0.40 0.79 16 45 H 0.06 1.77 8.11 -51.93 -0.42 1.35 16 46 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 47 H 0.05 1.09 7.73 -51.93 -0.40 0.69 16 48 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 49 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 50 H 0.10 1.44 7.08 -51.93 -0.37 1.07 16 LS Contribution 391.57 15.07 5.90 5.90 Total: -1.00 -31.05 391.57 -9.68 -40.72 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -8.81 Total: 1.41 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 0.54 Total: -0.54 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: -1.36 Total: -44.18 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.93 Total: -19.42 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.05 -9.68 -40.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208092357.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.547 kcal (2) G-P(sol) polarization free energy of solvation -31.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds