Wall clock time and date at job start Tue Mar 31 2020 14:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47132 * 2 1 4 4 C 1.53004 * 109.47154 * 240.00066 * 2 1 3 5 5 O 1.45201 * 109.47101 * 120.00041 * 2 1 3 6 6 C 1.34640 * 116.99624 * 59.99862 * 5 2 1 7 7 O 1.21503 * 120.00607 * 359.97438 * 6 5 2 8 8 N 1.34786 * 119.99671 * 180.02562 * 6 5 2 9 9 C 1.47152 * 120.98030 * 359.97438 * 8 6 5 10 10 C 1.53292 * 108.38237 * 129.48937 * 9 8 6 11 11 O 1.42969 * 109.22472 * 52.30314 * 10 9 8 12 12 C 1.42964 * 114.16061 * 297.41754 * 11 10 9 13 13 H 1.08998 * 109.55729 * 302.63087 * 12 11 10 14 14 C 1.53006 * 109.50942 * 182.50140 * 12 11 10 15 15 N 1.46904 * 109.46673 * 65.25436 * 14 12 11 16 16 C 1.47477 * 110.99991 * 74.03226 * 15 14 12 17 17 C 1.53508 * 87.93423 * 138.69791 * 16 15 14 18 18 C 1.50699 * 114.34493 * 220.31034 * 17 16 15 19 19 H 1.08003 * 119.99638 * 93.92952 * 18 17 16 20 20 C 1.37876 * 120.00467 * 273.92580 * 18 17 16 21 21 N 1.31511 * 119.99854 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00127 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47230 * 89.99949 * 22 20 18 24 24 H 1.48501 * 109.47073 * 210.00304 * 22 20 18 25 25 H 1.48506 * 109.46905 * 329.99687 * 22 20 18 26 26 C 1.47486 * 110.99774 * 169.99845 * 15 14 12 27 27 C 1.47148 * 120.98187 * 180.02562 * 8 6 5 28 28 H 1.08994 * 109.47008 * 300.00330 * 1 2 3 29 29 H 1.09003 * 109.46871 * 60.00000 * 1 2 3 30 30 H 1.08996 * 109.47477 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46951 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47242 * 299.99773 * 3 2 1 33 33 H 1.09004 * 109.47328 * 59.99992 * 3 2 1 34 34 H 1.09006 * 109.46975 * 300.00246 * 4 2 1 35 35 H 1.08998 * 109.46839 * 60.00108 * 4 2 1 36 36 H 1.09003 * 109.47106 * 180.02562 * 4 2 1 37 37 H 1.09001 * 109.68017 * 249.21567 * 9 8 6 38 38 H 1.09001 * 109.68308 * 9.76372 * 9 8 6 39 39 H 1.08996 * 109.51174 * 172.22597 * 10 9 8 40 40 H 1.09000 * 109.51512 * 292.32989 * 10 9 8 41 41 H 1.08992 * 109.47046 * 185.25376 * 14 12 11 42 42 H 1.08997 * 109.47395 * 305.25916 * 14 12 11 43 43 H 1.09003 * 113.47569 * 253.46529 * 16 15 14 44 44 H 1.09003 * 113.47453 * 23.93149 * 16 15 14 45 45 H 1.09006 * 114.16568 * 87.62279 * 17 16 15 46 46 H 0.97004 * 120.00499 * 179.97438 * 21 20 18 47 47 H 1.09003 * 113.47482 * 336.06931 * 26 15 14 48 48 H 1.08995 * 113.47435 * 106.46688 * 26 15 14 49 49 H 1.08999 * 109.68271 * 110.78738 * 27 8 6 50 50 H 1.09000 * 109.68243 * 350.22940 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3383 7 8 0.9508 -2.5095 0.5040 8 7 2.0671 -2.6655 2.4172 9 6 2.9165 -2.0364 3.4409 10 6 2.2905 -2.2975 4.8156 11 8 2.0491 -3.6988 4.9644 12 6 1.1187 -4.2357 4.0211 13 1 0.1718 -3.7013 4.0979 14 6 0.8928 -5.7203 4.3145 15 7 0.2402 -5.8672 5.6223 16 6 -1.1807 -5.4787 5.5505 17 6 -1.4987 -6.6870 6.4424 18 6 -2.7465 -7.4363 6.0517 19 1 -2.6793 -8.2934 5.3980 20 6 -3.9739 -7.0276 6.5287 21 7 -4.0557 -5.9837 7.3243 22 14 -5.5205 -7.9568 6.0450 23 1 -5.7762 -9.0388 7.0293 24 1 -6.6741 -7.0219 6.0261 25 1 -5.3406 -8.5483 4.6947 26 6 -0.2082 -7.2559 5.8362 27 6 1.6851 -4.0740 2.6055 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7490 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1301 -0.7216 -1.2490 37 1 3.9165 -2.4688 3.4047 38 1 2.9736 -0.9628 3.2615 39 1 2.9727 -1.9607 5.5962 40 1 1.3488 -1.7546 4.8960 41 1 0.2572 -6.1509 3.5408 42 1 1.8518 -6.2383 4.3268 43 1 -1.3935 -4.5208 6.0251 44 1 -1.6019 -5.5561 4.5481 45 1 -1.4370 -6.4814 7.5111 46 1 -4.9193 -5.6959 7.6597 47 1 -0.3698 -7.8075 4.9101 48 1 0.4040 -7.8044 6.5520 49 1 2.5612 -4.7112 2.4853 50 1 0.9266 -4.3498 1.8728 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208092357.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:20 Heat of formation + Delta-G solvation = -104.714255 kcal Electronic energy + Delta-G solvation = -29112.664776 eV Core-core repulsion = 25140.699385 eV Total energy + Delta-G solvation = -3971.965391 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.08318 -40.96280 -39.96079 -38.08693 -36.11166 -34.92878 -34.81670 -33.65881 -30.67685 -29.10177 -28.39318 -28.30925 -27.39081 -26.60159 -25.07451 -24.28180 -22.76054 -21.82746 -20.48249 -20.41095 -19.14808 -18.66134 -17.94282 -17.47530 -17.42796 -16.83699 -16.53036 -16.34300 -16.25005 -15.89802 -15.60657 -15.40091 -15.24746 -14.74703 -14.66337 -14.46710 -13.87244 -13.72798 -13.58904 -13.28584 -13.19274 -13.14236 -12.99724 -12.89381 -12.83498 -12.72732 -12.63265 -12.52882 -12.40055 -12.33942 -12.08278 -11.74997 -11.50416 -11.43777 -11.22694 -11.15604 -11.06393 -10.84232 -10.50747 -9.75551 -9.65515 -8.15604 -6.27051 0.94061 1.42400 1.42648 1.53152 1.62990 2.41858 2.65078 2.70630 3.13689 3.18899 3.69807 3.72393 3.77205 3.79730 3.82995 3.92495 3.97314 4.14855 4.23060 4.30125 4.33121 4.46241 4.49839 4.52904 4.58296 4.59317 4.62261 4.67933 4.74242 4.77427 4.80161 4.83384 4.85763 4.86582 4.95401 4.99408 5.06957 5.19588 5.21770 5.25680 5.32043 5.40169 5.47196 5.62395 5.84766 6.13455 6.15724 6.29520 6.41271 6.82924 7.13790 7.41595 8.94256 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.015596 B = 0.002714 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.859564 B =10313.229716 C =11269.645389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.124 3.876 3 C -0.134 4.134 4 C -0.178 4.178 5 O -0.362 6.362 6 C 0.650 3.350 7 O -0.592 6.592 8 N -0.602 5.602 9 C 0.082 3.918 10 C 0.042 3.958 11 O -0.374 6.374 12 C 0.097 3.903 13 H 0.037 0.963 14 C 0.030 3.970 15 N -0.473 5.473 16 C 0.017 3.983 17 C 0.022 3.978 18 C -0.529 4.529 19 H 0.061 0.939 20 C 0.013 3.987 21 N -0.923 5.923 22 Si 0.958 3.042 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.265 1.265 26 C 0.010 3.990 27 C 0.108 3.892 28 H 0.058 0.942 29 H 0.092 0.908 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.134 0.866 40 H 0.041 0.959 41 H 0.060 0.940 42 H 0.098 0.902 43 H 0.039 0.961 44 H 0.048 0.952 45 H 0.028 0.972 46 H 0.262 0.738 47 H 0.066 0.934 48 H 0.076 0.924 49 H 0.101 0.899 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.782 14.337 -14.936 26.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.088 3.912 3 C -0.191 4.191 4 C -0.235 4.235 5 O -0.277 6.277 6 C 0.406 3.594 7 O -0.483 6.483 8 N -0.343 5.343 9 C -0.040 4.040 10 C -0.035 4.035 11 O -0.292 6.292 12 C 0.037 3.963 13 H 0.055 0.945 14 C -0.099 4.099 15 N -0.195 5.195 16 C -0.113 4.113 17 C 0.003 3.997 18 C -0.567 4.567 19 H 0.080 0.920 20 C -0.186 4.186 21 N -0.562 5.562 22 Si 0.783 3.217 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.189 1.189 26 C -0.119 4.119 27 C -0.014 4.014 28 H 0.077 0.923 29 H 0.111 0.889 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.121 0.879 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.115 0.885 38 H 0.132 0.868 39 H 0.152 0.848 40 H 0.059 0.941 41 H 0.078 0.922 42 H 0.117 0.883 43 H 0.057 0.943 44 H 0.066 0.934 45 H 0.047 0.953 46 H 0.071 0.929 47 H 0.084 0.916 48 H 0.094 0.906 49 H 0.119 0.881 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 17.029 14.598 -14.567 26.745 hybrid contribution -1.874 -0.549 -0.773 2.100 sum 15.156 14.049 -15.341 25.737 Atomic orbital electron populations 1.22494 0.94516 1.03409 1.03545 1.22458 0.94224 0.92978 0.81559 1.21877 1.02631 0.90217 1.04344 1.22462 1.01780 1.02044 0.97264 1.86286 1.71414 1.22482 1.47495 1.18084 0.78388 0.81067 0.81864 1.90893 1.42206 1.71067 1.44097 1.47070 1.53254 1.12224 1.21723 1.22609 0.94387 1.00490 0.86482 1.23176 1.00733 0.82026 0.97607 1.88071 1.62724 1.23341 1.55099 1.22243 0.91395 0.94870 0.87752 0.94451 1.22627 1.01261 0.93951 0.92098 1.68890 1.12527 1.11187 1.26944 1.23744 0.88383 0.99894 0.99238 1.20020 0.92287 0.92861 0.94513 1.21390 0.92056 1.13790 1.29502 0.92043 1.25855 1.02410 0.95764 0.94605 1.70102 1.25657 1.26424 1.33998 0.85559 0.78710 0.78400 0.79028 1.19832 1.21123 1.18912 1.23855 0.96732 0.90999 1.00283 1.22257 1.02385 0.79917 0.96859 0.92307 0.88897 0.92463 0.90737 0.87937 0.91299 0.92281 0.89022 0.91568 0.88458 0.86850 0.84805 0.94056 0.92228 0.88341 0.94275 0.93370 0.95340 0.92893 0.91599 0.90593 0.88092 0.88848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.59 8.37 71.98 0.60 -2.99 16 2 C 0.12 2.23 1.13 -10.79 -0.01 2.22 16 3 C -0.13 -1.46 8.85 71.98 0.64 -0.82 16 4 C -0.18 -3.10 8.37 71.98 0.60 -2.50 16 5 O -0.36 -8.13 8.58 -55.49 -0.48 -8.61 16 6 C 0.65 17.51 7.75 129.79 1.01 18.52 16 7 O -0.59 -18.88 11.35 19.83 0.23 -18.65 16 8 N -0.60 -14.63 3.02 -947.61 -2.86 -17.49 16 9 C 0.08 1.49 6.65 86.35 0.57 2.06 16 10 C 0.04 0.90 6.98 72.08 0.50 1.40 16 11 O -0.37 -10.98 10.34 -148.98 -1.54 -12.52 16 12 C 0.10 2.90 2.86 30.71 0.09 2.99 16 13 H 0.04 1.33 7.55 -2.39 -0.02 1.31 16 14 C 0.03 0.95 4.49 86.30 0.39 1.34 16 15 N -0.47 -19.20 6.37 -927.95 -5.91 -25.10 16 16 C 0.02 0.80 6.51 83.57 0.54 1.34 16 17 C 0.02 1.15 3.76 -11.20 -0.04 1.11 16 18 C -0.53 -29.18 8.83 25.60 0.23 -28.95 16 19 H 0.06 3.26 7.81 -2.91 -0.02 3.24 16 20 C 0.01 0.72 5.46 84.65 0.46 1.18 16 21 N -0.92 -54.98 13.26 21.45 0.28 -54.69 16 22 Si 0.96 43.65 29.54 68.60 2.03 45.68 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 25 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 26 C 0.01 0.41 7.27 83.57 0.61 1.02 16 27 C 0.11 2.73 5.93 86.37 0.51 3.24 16 28 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.06 1.52 5.88 -2.39 -0.01 1.50 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.06 1.41 5.88 -2.38 -0.01 1.39 16 35 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.11 1.73 7.01 -2.39 -0.02 1.71 16 39 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.06 1.86 7.56 -2.39 -0.02 1.84 16 42 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 43 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.05 2.28 7.66 -2.39 -0.02 2.26 16 45 H 0.03 1.65 8.11 -2.38 -0.02 1.63 16 46 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 47 H 0.07 2.58 7.73 -2.39 -0.02 2.56 16 48 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 49 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 50 H 0.09 2.58 7.08 -2.39 -0.02 2.57 16 Total: -1.00 -68.95 391.57 -0.65 -69.60 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.90 Total: 20.62 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 6.70 Total: 1.17 kcal Atomic # 7 Polarization: -88.80 SS G_CDS: -8.49 Total: -97.29 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -1.79 Total: -39.78 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -68.95 -0.65 -69.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208092357.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.116 kcal (2) G-P(sol) polarization free energy of solvation -68.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds